XLOC_033103 (lrrn1)


Basic Information

Item Value
gene id XLOC_033103
gene name lrrn1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 43076516 ~ 43092175 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064327
CTGGAGCCAGTCAGCGGATTCCCGTTGCAAGGAAGGATCCACGCACACTCGACCATGCGCTCAGCGGACGGTGAAAATTCGCGGCGTGGATGTAACGAGACGATGCCGCTGTGAAGCAGTTCGTCGCGCGGAACTTACAAACGACGTGATGGTGTTGATTATCTATGGATTTTCATTCATCGCTCGATCTTCTGTTCACAAGGACATAGATGCTGTATGTAGATACAGTAAGTGCATGAAGCAGTCTGCGCGCAGGGAGGACTTCAGTATCATTCGGAACGTGTAGATCGGAAAGCCGAAGAGGCCAACCCTCCAGTCCAGGATTCATGCTGTGAGGAAGTTTCAAACCTATATGAGCCCACGGGAACTACACCCTCCAAAATCTTCCGGAAGCTCTTTGACTCTGCTGTTCAAGCTTTCAGAGGGATAAAAGGGCTATTCTGCAACACATCTATTGAATAAGAATTTCACCTCCCCATCTCTTTGGCGCTACAAGTATTCTAGCTCTGATCTGAGGGATAAACACTTACATTCAGAATGGCTAGAGGGACTTTCTTTTTGGTAGTGGAGGGGCAGATTTGTTTCATCCTGCTTCTGGCTGTACTTGGTCTCTCTTCGGTTCACAGTACAGAATGTCCGCAGCTTTGTGTGTGCGAGATCCGGCCTTGGTTCACACCCCAGTCCACCTACAGAGAAGCAACTACTGTTGATTGCAATGACCTTCATCTTACACGGATTCCCGGTAACCTGTCAGCCGACACACAGGTGTTGCTTCTGCAGAGTAACTACATTGCCAGAACTAGCGAGGAACTGGAGCAGTTACTGAATCTTACAGAACTCGATCTGTCCCAGAACAATTTCAGCAACATCCGTGACATCGGCCTGACCAACATGTCACAACTCACGACTCTTCACCTGGAGGAGAACCAAATAGTTGAGATGCCTGACTTCAGTTTGCAGGATCTTACCAATCTACAGGAGCTGTACATTAATCACAATCAGATCAGCTCCATTGCACCCAATGCCTTCGCCGGATTGCGTAACCTTCTGAGACTCCATTTGAACTCCAACAGACTCAAGGCCATCGACAGTCGTTGGTTTGaatcaacccccaacctggagatCCTTATGATTGGGGAAAATCCTGTGGTCGGCATTCTTGATTTAAACTTCAAACCTCTTACCAACTTGAGAAGCCTTGTCCTGGCAGGAATGGAGCTCACTGACATCCCAGGCAATGCATTTGTTGGACTGGACAACCTGGAGAGTCTCTCCTTCTATGACAATAAACTAGTTCGGGTTCCCCAGACTGCTCTGCAGAAGCTACCAAACTTGAAATTTCTGGATTTGAACAAGAACCCAATACATAAAATTCAAGAGGGGGACTTTAAGAACATGCTCAGGCTGAAAGAacttggcattaacaacatgggAGAACTTGTGTCCATTGATCGCTTTGCATTGGATAACCTCCCTGAGTTGACCAAACTGGAAGCCACCAACAATCCCAAGTTTTCCTACGTGAGCCGTTTAGCGTTCCGTGATTTGCCGGCACTAGAGAGCCTAATGCTCAATAATAATGCCCTAAACTCCCTCTACCAGGCAACGGCTGATTCTCTGCCCAACCTGAGAGAGATCAGCATCCACAGCAACCCACTCCGCTGCGACTGTGTAATCCAGTGGATGAGTTCCAACAAGACAACCATTCGATTCATGGAGCCTCTTTCTATGTTCTGCACCATGCCGATTGAAGTTAGAGGTCAGCGCGTGAGAGATGTGTTTTCTCGTGAACCTTCAGGCCAGTGTCTCCCAATGATCTCCCATGACACTTTCCCCAATCACCTCAACCTGGACATCGGGATGACGGTAGATCTTGACTGTCGTGCAATGGCTGAACCCGAACCGGAAATATACTGGGTGACACCATCTGGTAACAAAGTCATGATGGATACAGTGTCTGATAAGTACCAACTTAATAGTGCAGGAACTCTGCGTATATCCTACATTCAGGTGGACGACTCTGGGCACTACACCTGTGTAGCACAAAATACAGAAGGAGCGGACACTCGGGTGACCGCCATTCGAGTTAACGGGACTCTTCTGGATAGCACGCAGCTTATGAAGATCTACGTTAAACACACCGAGTCCCATTCCATTCTAGTGTCCTGGAAAGTGAACTCCAACGTCATGACGTCCAATCTGAAGTGGTCATCGGCTACTATGAAAATCGACAACCCTCACATTACCTATACTGCTAAAGTTCCTGTAGATGTCCATGAGTACAATCTCACACACCTTCAGCCGGCAACTGAGTATGAGGTGTGCCTTTCGGTTTCCAATATCCACCAACAGACTCAAAAATCCTGCGTCAATGTCACAACCAAGCACGCCACGTTTGCGGTGGAGATCTCCGAGCAAGGCACCAATACGGCTCTGGCTGCTGTCATGGGCACCATTCTGGCCATCATCAGCCTGGGCTCTATCACGTTGTACATTGCGAAGAGATGGAAGAGGAAGAACTACCATCACTCCCTGAAGAAGTACATGCAGAAAACCTCATCCATCCCTCTAAATGAACTCTATCCTCCCCTCATTAACTTATGGGAGGCAGACAGTGAAAAGGACAAGGACGGATCTTCAGACAATAAGCAGACACAGGTGGACACAACAAGAAGTTACTACATGTGGTGAAGCCTGCCAGACTTTTCCTCTCCTTTAGAGCACAAAGACACACCTTGGCTTATTTGTGCGCGAGAAAGACATGGATTTCCCTTTTTTCTGCTTTGCTTACCGCAAGCAACTATTCAGACTGATATCTCTGACTTTTTAGTAGAGTGTATTGCCTTTTCTTCTTCTTTGACTTTCAATATGGCAGCTTTGTTTAGCTTCCGAGACATGTTAGTAgctgtgctttttcttttttgtttattctatttTGATAGCACAGCGTAGATAAATGTCAAGGATTGACTTTGGGTCGATAGATGCTATACAGTACTCTATCTGATCCGATAAATTAATACGTCTTTGGCAGTATTCATAGAGAATGCAttgtttctttctctctttcgtaaGACAGTTTAACTGTTGTGCACTGAAATATATTAACTAATTTGTCTTTGGACTCCAGTGTAAGCTGACAAGTTGAGTTTAGACTTGATACACTGTCTATTGAAAAACGTTAGCGATTGTTCTGTAATGTTGTATCAACTATAATTTGAACATTTTGGATTTTTCTCAAAAGTCAATTTTTGATTTAGAAGGTATCTTCGCAGATTAATGAATTGTAAACCAGCAATAGAAACGTGAATGTTTAATAATTAGGTAGTAGAAAAAtgctttcgttttaattattcagattcttcttcttttttttaattggctaAAATCTGTTAATCACTTAATTTTGTTGTAATTTACACTTGCGAAATATGTTGCATATTACagtgcaaacaaaaataaaaaactgttttgttCAGATATTTTTTATACAATGA

Function

symbol description
lrrn1 Acts upstream of or within olfactory nerve formation and olfactory placode morphogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in basal plate midbrain region; hindbrain neural keel; nervous system; neural plate; and somite. Orthologous to human LRRN1 (leucine rich repeat neuronal 1).

GO:

id name namespace
GO:0021628 olfactory nerve formation biological_process
GO:0071699 olfactory placode morphogenesis biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071126-1 Acts upstream of or within olfactory nerve formation and olfactory placode morphogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in basal plate midbrain region; hindbrain neural keel; nervous system; neural plate; and somite. Orthologous to human LRRN1 (leucine rich repeat neuronal 1).

Ensembl:

ensembl_id ENSDARG00000060115

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064327 True 3497 mRNA 0.44 2 43076516 43092175

Neighbor

gene id symbol gene type direction distance location
XLOC_033102 NA coding downstream 3634 43057462 ~ 43072882 (-)
XLOC_033101 glyctk coding downstream 24623 43019642 ~ 43051893 (-)
XLOC_033100 si:ch73-361p23.3 coding downstream 69252 43001964 ~ 43007264 (-)
XLOC_033099 tnfrsf18 coding downstream 92673 42975278 ~ 42983843 (-)
XLOC_033098 arl8ba coding downstream 105332 42951960 ~ 42971184 (-)
XLOC_033104 si:dkey-178o16.4 coding upstream 126676 43218851 ~ 43221581 (-)
XLOC_033105 frmd4ba coding upstream 128016 43220191 ~ 43387920 (-)
XLOC_033106 BX927362.1 coding upstream 254754 43346929 ~ 43349086 (-)
XLOC_033107 eevs coding upstream 345899 43438074 ~ 43449013 (-)
XLOC_033108 MDFIC2 coding upstream 399460 43491635 ~ 43498996 (-)
XLOC_033085 NA non-coding downstream 1623628 41451670 ~ 41452888 (-)
XLOC_033077 NA non-coding downstream 2108175 40963686 ~ 40968341 (-)
XLOC_033076 CR293534.1 non-coding downstream 2130041 40946357 ~ 40946475 (-)
XLOC_033074 NA non-coding downstream 2212438 40856139 ~ 40864078 (-)
XLOC_033111 NA non-coding upstream 887536 43979711 ~ 44002542 (-)
XLOC_033118 NA non-coding upstream 2831767 45923942 ~ 45929175 (-)
XLOC_033121 BX005101.1 non-coding upstream 3075842 46168017 ~ 46251940 (-)
XLOC_033122 BX005101.2 non-coding upstream 3135942 46228117 ~ 46228232 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_11005204_11007357 LRRN1 coding CI01000340 null 11004438 ~ 11007434 (-)
striped catfish (Pangasianodon hypophthalmus) G23621 lrrn1,LOC107713505,LOC107667032,LOC107584468,LOC107680720 non-coding NC_047596.1 CM018542.1 8432140 ~ 8435785 (-)