XLOC_033104 (si:dkey-178o16.4)


Basic Information

Item Value
gene id XLOC_033104
gene name si:dkey-178o16.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 43218851 ~ 43221581 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064328
AGACCCTCCCTCTCCCGGCAGAGCCCCATATAAAAGGTCTCGTCTCCATTCTCCCTCACACTAAAGATGACAGTGTGGTGTACGCGCCACCAGCTGGACTTCACCTACTGAACTTAAAGTACTTTTAACATCATCCACCTATTCAGATAATGCCGTTTTCATTTACGTTAAACTTAAGCAACACATCCGTGGAGATGGACACCTCCGCAGATGAGCCCCGAAACGAGCAACTGGCTCAAATCGAGATCGCGCTTCTGAGCGTTATCTTCCTCTGCGCGTCCACTCTGAACTTCAGCCTGCTGCTGGTCCTGTGGAGGAAACGACAGCAGATGTCCAGAATGCGCGTGTTTGTGACCCACCTCTGTTTGGCGGACCTGGTGGTCGCGTTTTTCCAAGTGTGCCCTCAGCTGATGTGGGACATAACTGACCGCTTCGTCGGTCCAGACCTCGTATGTCGTTTGGTCAAGTATCTGCAGGTCGTCGGCATGTTTGCGTCCACTTATATGATAGTTGTGATGACTGTTGACCGCTATCAGGCGATCTGCAACCCGATGGTGACTTTCCAGAGGAGGCGCGCGCGGTGGAATCTGCCCGTGTGCGTCGCGTGGCTGGTGTCGTTCGTTTTAAGCGTACCGCAATTGTTTATTTTCTCCAGAGTTCAAATCGCCCCGGGGGTCTACGACTGCTGGGCTGAGTTTGTCCAGCCGTGGGGACCTAAAGCGTACGTGACATGGACGACGCTGGTGATTTTTCTGGTGCCCGTGGTAATGGTGACTGCCTGTCAGGTGCGCATCTGCCGCGCGCTCCAGATCAACCTGTATCTAAAGACGCAGCAGCAACAGCGGGGAGACGAAGGACACTCGCACCCACTCTCCTCCAGAGCCAGCAATGTGGTGTCGGTGTCCAAATCTCGGATTAAGACGGTGAAGATGACTGTGGTGATCGTGCTCGCCTACACTGTTTGCTGGGCTCCTTTCTTCACCGTGcagctgtggtctgtgtgggACGACGACGCACCGACCGAGActgcaaccttcaCCATCCTCATGCTGCTGGCGAGTCTGAACAGCGTTGCCAATCCATGCATCTACCTGCTGTTCACAGTGAAGTTTCCAGAACTCTTAGGGTCTCTGCTGTGCATGAAACACGCTGAGAAGAAGGAGCCACTGCCTGAGGAGACTACAATGGTCAGCTCTCTCTATCTGAGCTTTAAAAGCCACTCTGACATACGGTGAAAAAGAAACAATGTTCTGTACTTTGCGCATGTATGCCAGTATTCTCTGTACATTTACcatgtaaataatttgtaaatttaataagTGTTCAGTACCTCTGTATATACAACATAATTTATATAGTGCTGTTACCATCTAGTACCATCAGTGCATCATGGTACGAGAACAATACATTATTTAAAGTAGAcatttgttaaattaattaaatttaaattaatggtTTGGCACAATGTGCCTATTGAGTACATGCATGTTTCTATCATAGTTATTTTTGAAATAGCTGCATGTCATTTCATCTGCAATTACATCCTTAAACTTTCATATAAAACCAGACCTGACCCTAACCTTCCCTGTAT

Function

symbol description
si:dkey-178o16.4 Predicted to enable peptide binding activity and vasopressin receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; positive regulation of vasoconstriction; and regulation of systemic arterial blood pressure by vasopressin. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0001992 regulation of systemic arterial blood pressure by vasopressin biological_process
GO:0045907 positive regulation of vasoconstriction biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0042277 peptide binding molecular_function
GO:0005000 vasopressin receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-163 Predicted to enable peptide binding activity and vasopressin receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; positive regulation of vasoconstriction; and regulation of systemic arterial blood pressure by vasopressin. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000076797

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064328 True 1591 mRNA 0.49 2 43218851 43221581

Neighbor

gene id symbol gene type direction distance location
XLOC_033103 lrrn1 coding downstream 126676 43076516 ~ 43092175 (-)
XLOC_033102 NA coding downstream 145969 43057462 ~ 43072882 (-)
XLOC_033101 glyctk coding downstream 166958 43019642 ~ 43051893 (-)
XLOC_033100 si:ch73-361p23.3 coding downstream 211587 43001964 ~ 43007264 (-)
XLOC_033099 tnfrsf18 coding downstream 235008 42975278 ~ 42983843 (-)
XLOC_033106 BX927362.1 coding upstream 125348 43346929 ~ 43349086 (-)
XLOC_033107 eevs coding upstream 216493 43438074 ~ 43449013 (-)
XLOC_033108 MDFIC2 coding upstream 270054 43491635 ~ 43498996 (-)
XLOC_033109 foxp1b coding upstream 380562 43602143 ~ 43890462 (-)
XLOC_033110 prok2 coding upstream 696948 43918529 ~ 43922813 (-)
XLOC_033085 NA non-coding downstream 1765963 41451670 ~ 41452888 (-)
XLOC_033077 NA non-coding downstream 2250510 40963686 ~ 40968341 (-)
XLOC_033076 CR293534.1 non-coding downstream 2272376 40946357 ~ 40946475 (-)
XLOC_033074 NA non-coding downstream 2354773 40856139 ~ 40864078 (-)
XLOC_033111 NA non-coding upstream 758130 43979711 ~ 44002542 (-)
XLOC_033118 NA non-coding upstream 2702361 45923942 ~ 45929175 (-)
XLOC_033121 BX005101.1 non-coding upstream 2946436 46168017 ~ 46251940 (-)
XLOC_033122 BX005101.2 non-coding upstream 3006536 46228117 ~ 46228232 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_11086607_11088953 NA coding CI01000340 null 11086159 ~ 11089394 (-)