XLOC_033115 (cntn3b)


Basic Information

Item Value
gene id XLOC_033115
gene name cntn3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 44584775 ~ 44711942 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064361
CACTTTGCTCGCTGAATTTGGGGCGTGCTAACAGAGACACTCTCAGCAGGAGGTGTATCAGCATGTAAGGTACCACAACTGCGCATTTCATCCACTGAGCGGCTGCTGGAGGAGGAGATACGCATCATATATACCCAACCAACCGTCTTTTTGGATCACTCTGCTGGTCGGAACCGATCACGGGGCACGTGTGTGCAGTGGATACGCCGGAGCGCCGTGATTCGTGGACTAATTGCGGGGCGCTTGCGGGAATACGAGGAGCTTCTCTGCGCACAAGAGGGAATAAATCTCCTTTTCCTGTCCGTCTCCACGCAGTCTTCGATTTAGAGGGCATTTATTTGATACTAAAAGTGAGAGAACGATCTCAGGCAAAATGTTACCGACGACATTAGGAGGTTAGAGGTGTTGAGGTTTAACCCATCACTGAACATGGAATAAATTCGCTCGTCTTCGCTCATTTGGACTTGGAATAACGAGAGCGCATCACGATTATACGTCTCACATTCAAGGGAGAAATCATTCCATTCACAAGCAATTGGATGAGAGTCATACTTGCCCTTGGCAACTAAAGATGACGTTACTATGGAAACGACTTGTGGCGCTATCAATCATTGGCTGCCTCGCAGTCTCATTAGCACAAGCAGAGGACGCTAAATTCTCTGGTCCAAGCTGGAAACGAGAACCAGAAGACCTGATACTACCCATCTATTCCCCTCAACAAGAGGCTGTTTTAAGCTGTGAGGCGTCTGGAGCCCCTTCTCCTCAATACAGATGGTCTCTAAACGGGACGCTCATTGATCTCGGTGGTGACGAGAGGCGTCGCCTGTCTGGAGGTAACCTGATCATTACCGGCCTGGATCGGGACCAAGACAGCGGGGTCTACCAGTGCACTGCCTTCAACACCCGGGGAACCATTCTCAGCCAGAGAGCTACGCTACAGTTTGCATATCTGGAAAACTTCAAAACGCAGACGAGAAGTGCTGTCAATGTGAGGGAAGGCCAAGGTGTTGTATTGTTATGCGGCACACCTTTACATTCTGGAGAGCTCACGTTCACCTGGGTCTTCAATGAGTACCCTCACTTCGTCCAGCAAGACAGCCGGCGATTTGTATCTCAAGAAACGGGGAATCTCTACATAGCAAAAGTGGAACCGTCCGACGTCGGGAATTACACCTGTGTGGTTAACAACACTATTACCAAGGAGAGGGTGTTCAGTTCGCCGACACCGTTGGTTCTAAGAAACGATGGAGCGATGGGAGAGTACGAGCCTAAAATAGAGCTTCATTTCCCCGACACCATTCCAGCTGCTAAAGGATCCGCGCTGAAGCTCGAATGCTTCGCCTTGGGAAATCCAGTTCCTAGGATCAGCTGGAGAAGAACCAGTGACGTTTCATTCCCAAATAAAGTCAAACTAAAGAATTCCAATGCAATTCTGGAAATTCCCAGTTTTCAACAAGAGGACACAGGAACGTATGAGTGCATTGCTGAAAACAGTCGTGGAAAAAATGCTGCAAGAGGTCGGGTGTCTTTCCATGCCACACCTCATTGGCTGCAGACGATGACAGACACTGCCATGTCCATTGAGGAGAATCTTTTTTGGGAATGCAAAGCCAATGGAAAGCCAAAACCCTCCTACAGCTGGCTAAAGAATGGAGAATCTCTCATATCTGAGGGCCGAGTGCAAATAGAGAACGGCGCTCTCTCCATCTTCTCACTAAACCTCTCAGATGGCGGCATGTATCAGTGTGTGGCAGAAAACAAGCATGGCATCATTTACTCCAGTGCTGAACTGATGGTGCTTGCCTCTGCTCCCAGTTTCTCCCAGAATCCTTTGAGCCAAACGCTTAAGGCGCGTTCTGGTAGTGACGTTAGCCTAGATTGCAGACCACATGCTTCGCCCAGAGCCATTAGCTTGTGGAAAAGAGGAACTGAGATACTGCAAAGAAACGaaagGACTTTCCTTTTCCCCAATGGGACACTTAAGATTACCAACATAACCAAGCGAGATGGAGGTAGTTACACGTGTGTTGCTAAAAACCAGTTTGGCACAGCTAGTACTACTGGGAAACTGATCATTACTGAGCCCACGAGGATCAGCCAGAGCCCCAGCAGCACAGAGATCACAGTGGGGGAGAGTGTGGTGCTGCCCTGCCAGGTGACTGCCGATCCAGCCCTGGACGTGGCCTTCTCCTGGGCCTTCAACGGTCAGCCCATTGATTTTCATCAGGATGCCGACCACTTCGAGCGAGTGGGAGGGAGCTTTTCTGGTGATCTTATGATTAGAAACATCCAGCTCAATCACGGAGGGAAATACGTTTGTCTTGTTGACACCGACGTCGAGAGCTTGTCTGCTGACGCAATATTGGTTGTTAAAGGTCCCCCCAGTCCTCCAGATATGGTGGTGGTCGAGGAGGTCACAGACAGCACTGCCCAGCTGTCCTGGAGCCCCGGCCAGGACAATGGAAGTCCTATTACTGGATACGCCATCCAGGGCAGGACTCCCTTTACTGTTGGCTGGCAAGCTGTCGACACAGTTCCTGAGGTGATCAATGGAAACACTCTGACTGCGACGGTAGTGGGTTTGAACGCTTGGGTGGAATATGAGTTCAGAGTGTTGGCCAGTAACAGTGTCGGAATGGGAGAACCCAGTCCTCCATCTACCAAGATCAGAACTGAAGATTCCATGCCTGACGCTGCTCCCACTGATGTTGGAGGCGGAGGAGGCACCAAATCAGAATTAGTGATAACATGGGAGCCTGTTCCAGAGGAGTTGCAGAACGGAGAGGGTTTTGGTTATATCATTGCTTTCCGGCCAGTGGGAATGGTGACTTGGACCCGTGTGGTGATTTCAGCACCCAGCCTCACCCGCTATGTTTTCCGCAATGACACCATCCCGCCATTCTCACCATTCAATGTCAAAGTGGGAGCCTTCAACAACCGCGGAGAAGGACCTTTCAGCACTATTGCAACTGTGTTCTCCGCAGAGGAAGTGCCAAGCATTGCGCCGGAGAAAGTGTCAGCAAAAAGCCTGTCAGCTGCAGACATTGAGGTTACCTGGGAGCCCATCGCATCAATTCCTGAAAGAGTCCTCGGATATGAGGTGGTGTACTGGGAAGATGACACCAAGCCGGATACAGTGGGTAAAGTTCGAATCACTGGAAACTACACAGCAGTGAATGTCAGCGGCCTGCAGGGGAACACTCAATATTACCTAGCGGTGTGCGCCTTCAATACAGCAGGAACCGGCCCACAGTCTGCACCGGTCAACATTACCACTAAGAAACCACCACCTGGACAGCCTCCGCAGAACGTAGAGTGGAATCTGATTGGCTCTCAGCTCATCCTTCAGTGGGATCCTGTCATTGCTCTGGAAACGGAATCTGAGGTCACTGGATACATAGTGCTGTACAGAAGACACCGGAATAACGACATGTACTCCATCATCACCAACAAAACCTCGGCTGAACTGACCCTCAACCCTAACGACAACTACGTCATCCAGATCAAGAGCCTTAGTGAAGGGGGTCTGGGGGAAGGAAGCGAACCCATCCACATCCACCAGCTCAGTATGGGTGCTCGTGGATCTCGATCAGGAAGGCTGTGTTCACTGTCTCTTTCTCCACTCCTCATCTGTGCTCTTTCCTCACTCGGTGCCTCCTGATGTTAAccagaggaagaaaaaaacaaaacaaaaaaaccacACTCCTGCTCTGCTCTCAAACAATGCTTATGCTTCCCATCACAGTCTGAGCGGATGCAATTCTCCAGCTCTGGCAAACAGAGCTGCCGGATATTGAAATGTCAAGGGAATGTTGGGAATCCGTCATTAGTAAACATGGTCGAGCCCCGCAAGAGAGTGATTGAGGCTTTTGGGAAGATCTGGAGAAAGATCTTATTTGCATCATTAAACAATATCAATTAATTTAAAaggaaaatcacattttaaaaaattaatatgtaAACAGTAGTGAATTCTGGGTATTTTTTAACCCCATTGACATTTTTCGCTTTAGGATATCACCATTAtacttaagaaaaaataaatataaataaatatggtaAGAAAACTTCACATTATaccatattatatttatattatattatattatattatattatattatattatattatattattacaaaagtaaaatgatcttgttttaagtgttattttgtatcatttaataacttttttatttagtttaacgtagtttttatttttagattttatgttttcatttcaatttaatttcaagATGTAGTCATTTTATTGTgcgtcatttattttcattatcatttatattgtttcattatatacaattaaaaatagcATCAATGGTATGGTAAATCCATATATTTTACAACCCTATTTTTAATtctagttttaatttttaattataataacccTGTCTTAAGACAAATCACTAAACATGAAAACTCATCTGGTACCCtacaaccagaaaaaaaaaaagaaaactcaaaacGCTTCTGATATTTGTATAATATGCTTCTTTATGCAGTGTGCCAATGTGTGCATcattttttcctctgattcctgaGAACAGTCTATGCCTTAAATTCATGTACGCACCAAAGTAGATAATAGAAACTAGTTCTGCAGAGGAGGACAAGGGCTAAGAAACCAGTGTTGATGGAAGTTGctcttatataatttatttttaagttttgggtCTGGGTTAacaaagcctggtttatactaaTGGGAATCTCCCATTGGTTTAGACATGAGGGCTGCCGTCCCACCTCGATTACAGTGCCATCGACTCCCTCTCAGTCTCTTTGATGGGTATTAGCATTTTGTTTAACGCTCCATGCCAGTTAAATTATTAATGCGTTAAGCATTAGACACTCTGTACAATTAAGGCTTACTTTCCCTGTGAGCATTTGCTCCATATTCGTCATCCAGCTGAACCAGTTTCACACTTTAGTTGGTTCTGCATCACACAATTTTTGCAACCCATTCATGCCTTTTAGTATTTATCAAATCTCCTTGTATAGCTCTACTGGGGTTGcagatgtaaaaaaacaaaacaaaaaacttgcGAACAAGTACAAGGTGCATGAAAGTCCCTAAGATATCCCCCCCAAAATCATACTTTTTCTAAGTATGCTTCTTATTTTCCAGTACAAATATCTAaacgttttttttaaatcagtatttATTTGCCTTTAAAGCAATCTGACAGAATTATTTTGTTTGAAAAATCATCAGAATTAAGTCTAGtctaaaacaagaaataaaatattatcagttaGAAAACTATTGCAAAACTGaatgatatatacagtatatttacaaggtcacgagtagcagtgtgatgtggctgtatatcatcccaccagtgacaatatacagccaaatcgcactgctacatgtgtgatattacatttatacaacagttcaatggcataatcgcgtatataaaaaagaaaatcaaacagagagagtctaaaaacccttttgtattaggaactactttcttcctccATTCACTGccagccgttactaattcaccaacataaTTTTAGAGCTagtgaatgattctctagcataatgtctaaactGTTGACAAAACAGGGGggtttgctgacattttaagatcatacggttgaacggcatgaaatgccatcagtctacagagatagcTCCCTACAGTATTACactctacagtatttctctgttgcaatacTTAAAGCCaaaaaaaagcagcgcaatcactatCATATTGCGGTTGTGTTTgggataaggaaaaatgctaaacacacacaggcatttttttctttctttctgccaacacaacacacattcttgatatgcgagtcccatctcacactcaatttATTGCAATTACATGGTATagatacagcactacaacatgcaaAGGAAAGAGATCGACatagaatatcacttaccagtttaataatgatttgttcagatgtagtttaaaattacgctgtattttttcctcctctaagggcttattatgcaggctctgtcaccatcttgtggatgcaCAACATCAATCGcctttgctcagtatgacaggctaatggaCGCCGATGTGCTGTctttcagaaattataaatattgtaaaataggtactatcattataaataaactgcaaatctaaacaactacattctcaacttaAAAGCCTCAAAACTACATTGTTGCCCAACAGCAGTCATAATTTTCAAACTGTAGATCGTCCTCtacttgttgctgtatgtgggcggagtaatacacaagggttaagaggctggacaAGTGCTGTTACTTGCAGAATATAGcatggctgtcaatcaatcagattcaagaaccagacagaactgttgactgttgtataaataaataaataaacatatatatatata

Function

symbol description
cntn3b Orthologous to human CNTN3 (contactin 3).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-645 Orthologous to human CNTN3 (contactin 3).

Ensembl:

ensembl_id ENSDARG00000053454

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064361 True 6398 mRNA 0.43 23 44584775 44711942

Neighbor

gene id symbol gene type direction distance location
XLOC_033114 pdzrn3b coding downstream 182417 44243070 ~ 44402358 (-)
XLOC_033113 shq1 coding downstream 423513 44089189 ~ 44161262 (-)
XLOC_033112 rybpb coding downstream 540390 44006709 ~ 44044385 (-)
XLOC_033111 NA coding downstream 582233 43979711 ~ 44002542 (-)
XLOC_033110 prok2 coding downstream 661962 43918529 ~ 43922813 (-)
XLOC_033116 rbm19 coding upstream 1131251 45843193 ~ 45869164 (-)
XLOC_033117 epha2a coding upstream 1162653 45874595 ~ 45905746 (-)
XLOC_033118 NA coding upstream 1212000 45923942 ~ 45929175 (-)
XLOC_033119 tardbp coding upstream 1225835 45937777 ~ 45949121 (-)
XLOC_033120 ca16b coding upstream 1239951 45951893 ~ 46162585 (-)
XLOC_033106 BX927362.1 non-coding downstream 1235689 43346929 ~ 43349086 (-)
XLOC_033102 NA non-coding downstream 1511893 43057462 ~ 43072882 (-)
XLOC_033085 NA non-coding downstream 3131887 41451670 ~ 41452888 (-)
XLOC_033077 NA non-coding downstream 3616434 40963686 ~ 40968341 (-)
XLOC_033121 BX005101.1 non-coding upstream 1456075 46168017 ~ 46251940 (-)
XLOC_033122 BX005101.2 non-coding upstream 1516175 46228117 ~ 46228232 (-)
XLOC_033123 CU041346.1 non-coding upstream 1582419 46294361 ~ 46310011 (-)
XLOC_033135 CABZ01055240.1 non-coding upstream 2444360 47156302 ~ 47156416 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_11903883_11956886 CNTN3B coding CI01000340 null 11903780 ~ 11956886 (-)