LOC118940527


Basic Information

Item Value
gene id LOC118940527
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 59612856 ~ 59613886 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037123.1
attctttcgcagaggcgatatcatagcctatgaagtccatctgaggcgtgattattgctggttgaaaacttaacccaataccccgcttgggatgacttgaaatatagtcagccttggcaatttttgatagtctcatgtgaga
>TU1681667
ctgctagacattgcaatgttaaaacacaatattaccgttaaaggagaagctgtgcaaaacactgtaaacagtttgagtagctgtaatatatcattctttcgcagaggcgatatcatagcctatgaagtccatctgaggcgtgattattgctggttgaaaacttaacccaataccccgcttgggatgacttgaaatatagtcagccttggcaatttttgatagtctcatgtgagactgctatacatgtgaaagagaagaagaccaaacatgggctgcatccaacTCATTTATtctataacctttttgatgcttcagctgacagttgaacattatcttgcaactaggtagaaacagaaaaaaggtgtcagtagtatatgctgtgtcagaagtagggttcgggagaatgaactcagcaacagcagGTTTGGGCCCACaatttcagctttgcccccacactgcctcgaattgttgcaagtagtatgttacccaaagccacttgacccactttgtcttgcctcctctagaggcagctatggcaagatttacatgaaaacgttttgggttcgtcccccattgcagctgagccagtggtgctgaTTActcaaagtgctttgctctcgatattggttttgtccaggaaaaaagggaacatctattgaacaagtaccccaccttgccattaattacatgtaatcgagaatccaccagtgttaggtagggggcgaactgctagacataccaatgtaacaaaaaataatacagtttgccgagaagctgtgcgagatactgcaagcagtttgaatagcagatttctgatattctatcgcagtggcattatcatagcctatgaggtccatccgaggagtggttattgttgggtgacaatttaacccaaaactttacattggaacgacatgaaatatagtcagaagtagtcttggggagaataggttcagcaacaggtggtattggtccacaattccagttttgcccccacactgcctctaattcttgcaagaagtaaggtaccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037123.1 False 142 mRNA 0.42 1 59612948 59613089
TU1681667 True 1031 lncRNA 0.42 1 59612856 59613886

Neighbor

gene id symbol gene type direction distance location
LOC118940558 NA coding upstream 936 59611890 ~ 59612012 (+)
LOC118940553 NA coding upstream 2189 59610618 ~ 59610759 (+)
LOC118940526 NA coding upstream 3453 59609354 ~ 59609495 (+)
LOC118940534 NA coding upstream 4726 59608081 ~ 59608222 (+)
LOC118940533 NA coding upstream 5998 59606809 ~ 59606950 (+)
LOC118940550 NA coding downstream 1226 59614315 ~ 59614456 (+)
LOC118940561 NA coding downstream 2498 59615587 ~ 59615709 (+)
LOC118940528 NA coding downstream 3556 59616645 ~ 59616786 (+)
LOC118940547 NA coding downstream 4828 59617917 ~ 59618058 (+)
LOC118940559 NA coding downstream 6100 59619189 ~ 59619311 (+)
G1470290 NA non-coding upstream 106611 59506034 ~ 59506337 (+)
G1470277 NA non-coding upstream 116822 59495827 ~ 59496126 (+)
G1469990 NA non-coding upstream 161766 59450762 ~ 59451182 (+)
G1469871 NA non-coding upstream 207155 59405174 ~ 59405793 (+)
LOC110494244 NA non-coding upstream 348419 59258342 ~ 59266492 (+)
G1470301 NA non-coding downstream 976 59614065 ~ 59618582 (+)
G1470331 NA non-coding downstream 26117 59639206 ~ 59639439 (+)
G1470335 NA non-coding downstream 30146 59643235 ~ 59643831 (+)
G1470341 NA non-coding downstream 34651 59647740 ~ 59647996 (+)
G1470383 LOC106583170 non-coding downstream 103520 59716609 ~ 59718373 (+)
G1469076 NA other upstream 1105063 58507297 ~ 58507885 (+)
G1467219 NA other upstream 1998648 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 2064770 57498305 ~ 57548178 (+)
G1467159 LOC106565433 other upstream 2129359 57478797 ~ 57554480 (+)
G1467031 NA other upstream 2462605 57149303 ~ 57150343 (+)
G1470607 NA other downstream 488803 60101892 ~ 60104007 (+)
G1471723 LOC100380707 other downstream 1359389 60972478 ~ 60999063 (+)
LOC110494283 LOC106565563 other downstream 1943230 61555873 ~ 61558328 (+)
G1473171 LOC106581772 other downstream 3085414 62698503 ~ 62698815 (+)
G1473177 NA other downstream 3097250 62710339 ~ 62711136 (+)

Expression


Co-expression Network