XLOC_033705


Basic Information

Item Value
gene id XLOC_033705
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 24814851 ~ 24815834 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00068828
CGCACGCGCTCACACACAGTCAGTGCAGAATTTCTCTCAGAAGTTGTCGGCGGTGCCCTCCATCATGTTTGGATTTGTACGAGCGCTTAAAAGAACGAGATGTACACCTGGACAACGTGTCTTTCCCTTTAGCCACCGTTTCTACATTAACTCCAAATCAGCTAAAAGCAGTGTCGGCGTTGTGGTAAGTTTAACTAAGCGAGCTTTTCCTGTCCTAAACATCTCAGAGTTACAGGCTAATAATTGACGTTTTCGCTGATTTATTAAACGCATTAATAGTGTGCAatcattatttacttattaacaaCATGATTTGCTTTTAACCACCAATCTGCATACATTTTGAGTAGTTTTATCAGTCTCTATTGTTTAAACTGGTAATTCTCCAGTATAACTAGTAAGTTAAACTTCCTGATTTTAATTAGTAGCTTGAATTGTTCTCTTTCACTGTAACATTAATTCATATTCAACTGATTGGTTTTAAAGATTACATTCAAACATAACAATTCATGGCATCCTTTTTAGTGCAAATGCACAGgtttatcagatatactgtgccAGTTTCAGTTTACATCAGCACATTATTATACACTAATGCTCAATGTTGCGTTTATTCCCACTTTTAGGAGAGCGTATTTGTGATGACCTTCATCTCTCTTGCTGTTCTTGGTCCGGCAGCATGGTTGCTGTCCAAATCATCTGATACCCACAAAAAACAGCAGTGAGGAAGAATGACGATGCCTTCTGCCAGAGGACCAGACATCTGTGTATTCTAGCAGTTTCAGTTGTACACTAACCTACCATCAGTGTGTGTCAATgtcaaatatgcatttaaatatggTGATCAAATACAACCTTTTCAATACcc
>TCONS_00065931
ACAGTCAGTGCAGAATTTCTCTCAGAAGTTGTCGGCGGTGCCCTCCATCATGTTTGGATTTGTACGAGCGCTTAAAAGAACGAGATGTACACCTGGACAACGTGTCTTTCCCTTTAGCCACCGTTTCTACATTAACTCCAAATCAGCTAAAAGCAGTGTCGGCGTTGTGGAGAGCGTATTTGTGATGACCTTCATCTCTCTTGCTGTTCTTGGTCCGGCAGCATGGTTGCTGTCCAAATCATCTGATACCCACAAAAAACAGCAGTGAGGAAGAATGACGATGCCTTCTGCCAGAGGACCAGACATCTGTGTATTCTAGCAGTTTCAGTTGTACACTAACCTACCATCAGTGTGTGTCAATgtcaaatatgcatttaaatatggTGATCAAATACAACCTTTTCAATACcccattgttttatttattgctgaTTCCCATCTTAACTCGAAGTCTGTGCCTGCCAATGATCATTTCTGTAACCACAAACTCACTTCAGCCAGTAGAGGTGTAAATCCCTTTAATAAAA

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0008152 metabolic process biological_process
GO:0006364 rRNA processing biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0050684 regulation of mRNA processing biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0048024 regulation of mRNA splicing, via spliceosome biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:1903311 regulation of mRNA metabolic process biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0016604 nuclear body cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005684 U2-type spliceosomal complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0036002 pre-mRNA binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko04623 Cytosolic DNA-sensing pathway
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-160728-64 Predicted to enable cytochrome-c oxidase activity. Predicted to be involved in oxidative phosphorylation. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000105573

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00068828 False 868 lncRNA 0.38 1 24814851 24815718
TCONS_00065931 True 527 mRNA 0.43 2 24814866 24815834

Neighbor

gene id symbol gene type direction distance location
XLOC_033704 shroom4 coding upstream 1831 24729558 ~ 24813020 (+)
XLOC_033703 NA coding upstream 99051 24715477 ~ 24715800 (+)
XLOC_033702 NA coding upstream 120104 24681222 ~ 24694747 (+)
XLOC_033701 NA coding upstream 136217 24673993 ~ 24678634 (+)
XLOC_033700 gba2 coding upstream 141435 24645186 ~ 24673416 (+)
XLOC_033706 CSKMT coding downstream 13036 24828870 ~ 24831653 (+)
XLOC_033707 krcp coding downstream 65846 24881680 ~ 24888634 (+)
XLOC_033708 mark2b coding downstream 73076 24888910 ~ 24977171 (+)
XLOC_033709 naa40 coding downstream 184226 25000060 ~ 25011597 (+)
XLOC_033710 b3gat3 coding downstream 199317 25015151 ~ 25029261 (+)
XLOC_033694 NA non-coding upstream 350535 24457029 ~ 24464316 (+)
XLOC_033692 CR318603.3 non-coding upstream 551112 24263623 ~ 24263739 (+)
XLOC_033712 NA non-coding downstream 226218 25042052 ~ 25047309 (+)
XLOC_033713 AL954715.5 non-coding downstream 227176 25043010 ~ 25043080 (+)
XLOC_033719 NA non-coding downstream 741795 25557629 ~ 25561192 (+)
XLOC_033720 CR846090.1 non-coding downstream 886609 25702443 ~ 25709533 (+)
XLOC_033721 NA non-coding downstream 921695 25737529 ~ 25740930 (+)

Expression


Co-expression Network