XLOC_003405


Basic Information

Item Value
gene id XLOC_003405
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 20888110 ~ 20890881 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008586
CCacttttatttcttaaaacatctttataaaaacacaaatataaaatgAATGGGTAGTTCCACTGtgaattctttttgttttttgtgttttgtttgttttttacataggTAATCTGCACATTACAAAGCCACTTTCTATGAAAAACATGATATATAATTGCAATTTTCTTTTAACACAATTTCTGAAGAGTAAAATCCAAAAAGGGTcagaaaagctaaaaaaacaaGGCAAAAGTAAAAGTTGTAAAAGAAAACAATTAGAAAAGTATAACAGAAGAGCACGAGTCAGCTTGAGAAAGGAAAAGTATCACTGTATGTGAGACTGTGACAAGAAAAGAGCGGTAAAGGAAGAGGTGATGGGAATGACAAAGAgaataagtgtaaaaaaaaaaaaaaagagtgaaatgAGGGAAAGACTGGTGTGTGTCTGCTATTTGAGAAGGGCTCGATAGAGCAGTTGTGAGTGGCTGGTGCTTTTCTCATTCTCTAGACAGAAGAGCAGATCCCTGAGGTTTACACGCGTGATGCGCTGGCGAGTGAACTGCCTCGACGCTCCTGCATTTAAGCCCCCGGATGCACTCGCGCACAAACCTGATACCTCTGTGTCGATCCCGAGCGAAGGAGAATCtggttttcttttctttctgggTCCGATGGCCGCCAACGCCGTCAAGTTGGCGTCTCTCTGTCGAATCTGAGCCAGTTCTTGTTGCTGCATCTGtagccacacacacaaaaacactcgcATCAGCTCTGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008586 True 757 lncRNA 0.40 2 20888110 20890881

Neighbor

gene id symbol gene type direction distance location
XLOC_003404 cdh4 coding upstream 61357 20371179 ~ 20826753 (+)
XLOC_003403 fezf2 coding upstream 828703 20056732 ~ 20059407 (+)
XLOC_003401 cadpsa coding upstream 847956 19780717 ~ 20040154 (+)
XLOC_003402 BX276115.1 coding upstream 854925 20033066 ~ 20033185 (+)
XLOC_003400 thoc7 coding upstream 1276754 19603251 ~ 19611356 (+)
XLOC_003406 CABZ01008730.1 coding downstream 5241 20896122 ~ 20906178 (+)
XLOC_003407 NA coding downstream 37360 20928241 ~ 20930324 (+)
XLOC_003408 zgc:113307 coding downstream 159445 21050326 ~ 21061566 (+)
XLOC_003409 CU459075.1 coding downstream 161347 21052228 ~ 21052344 (+)
XLOC_003410 prelp coding downstream 185991 21076872 ~ 21086254 (+)
XLOC_003369 CR854846.2 misc upstream 4765028 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 8176114 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 8193847 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 8202511 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 8208082 12679732 ~ 12680028 (+)
XLOC_003395 CU207354.2 non-coding upstream 2054864 18832913 ~ 18833246 (+)
XLOC_003394 NA non-coding upstream 2146007 18741027 ~ 18742103 (+)
XLOC_003393 NA non-coding upstream 2180051 18702362 ~ 18708059 (+)
XLOC_003392 BX296530.1 non-coding upstream 2211553 18676442 ~ 18676557 (+)
XLOC_003413 BX321912.1 non-coding downstream 294588 21185469 ~ 21186684 (+)
XLOC_003414 NA non-coding downstream 411831 21302712 ~ 21306762 (+)
XLOC_003415 NA non-coding downstream 515806 21406687 ~ 21408834 (+)

Expression


Co-expression Network