XLOC_003419


Basic Information

Item Value
gene id XLOC_003419
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 21902677 ~ 21903694 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008600
CCTCACATGCACCGCCGCTGGCTCCAcctctgaatgaatgaaaactttgCAAACCTCCCACAATCCCTCCCATCGCCCCCTCTTTATCCTCAAGGGAGCCAGGTGACACTTCAGCCTGCTCGCAGAGCCTCTGTGGCTGGGCTACAGCTGCAATGAGCTGGGCCGAGTCGGTCAGCTCCTCCTAAGTGGCCTCAGctTTATTCAAGATGAAGTTCCTCGCATGACACGGGCCGTTAGGATCGGTTACCGCTCCCCGAAGACAGCTCGGCCATGTGGTTTATGTGAGGATGGATACAGTGTTGACAAAAAGACGAGAGTGAGGGGAAAGACCTGGGAGAAGGAAGAGAGACAGAACAGAGCTGCGGAGGAGTAAACAATACCGCTCTGCGTTATTTAACACCCTCTAACTGAAGCCAGCTGGGCCTGTAAACACGTTTATGACGATTTAATGAAAACATGCTGGTGTGTCTATGATCTTCCTCACCAATCAAACGGTGTAATTTGTATCGCATACACTGCCACTGTCTTGTGGCATAAACAGTGGCTTGCAGCTGTCATCATAGTATCTTATTTTGAGGTACACTGCCTAAGtacctttttttttactctcGAAATCTCAAGGGTAGttctattttgttttttgcttttaaagACCTTGGGCTATGTTTGTAAAcagtaatcattttttattttacagtgttcatttttttactaCATTACTCCCACATGGCAGTTAAAGCAGTTTTAGGCTTAATACCACACAAATGTAGTTGCACATAaaggctgcacacacacacacacacactaacacacacacacacacacacacacacacacacacacacatacaacaatcTGCTCTACATCCTTAGGCAATGGCCTGTGTCATTTGTAACGGAGGTGGCc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008600 True 906 lncRNA 0.46 2 21902677 21903694

Neighbor

gene id symbol gene type direction distance location
XLOC_003417 NA coding upstream 143652 21612671 ~ 21759025 (+)
XLOC_003418 CR812468.2 coding upstream 252039 21650522 ~ 21650638 (+)
XLOC_003416 FAM72B coding upstream 304150 21586335 ~ 21598527 (+)
XLOC_003415 NA coding upstream 493843 21406687 ~ 21408834 (+)
XLOC_003414 NA coding upstream 595915 21302712 ~ 21306762 (+)
XLOC_003420 foxp4 coding downstream 6649 21910343 ~ 22094392 (+)
XLOC_003421 MDFI coding downstream 206193 22109887 ~ 22169026 (+)
XLOC_003422 ppfia4 coding downstream 470725 22374419 ~ 22584452 (+)
XLOC_003423 BX537143.1 coding downstream 693032 22596726 ~ 22599593 (+)
XLOC_003424 si:ch211-86h15.1 coding downstream 719590 22623284 ~ 22630389 (+)
XLOC_003369 CR854846.2 misc upstream 5779595 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 9190681 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 9208414 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 9217078 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 9222649 12679732 ~ 12680028 (+)
XLOC_003413 BX321912.1 non-coding upstream 715993 21185469 ~ 21186684 (+)
XLOC_003425 CU861893.1 non-coding downstream 810321 22714015 ~ 22714131 (+)
XLOC_003426 NA non-coding downstream 1016775 22920469 ~ 22927188 (+)
XLOC_003428 BX571675.1 non-coding downstream 1493576 23397270 ~ 23397385 (+)
XLOC_003430 NA non-coding downstream 1690655 23594349 ~ 23597671 (+)

Expression


Co-expression Network