XLOC_003462 (phf20a)


Basic Information

Item Value
gene id XLOC_003462
gene name phf20a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25044082 ~ 25063586 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006786
TGCGCAGATGTGGTATTGTTCATACCGGTAGTCTGTGGAACACATTGGAAAATAAGTGCGCGCATCTCGCGCCCAACGTGCTTACAATAAAAGACGCTTTGATACATTAACAACGGGCGTTTATAGTTACAAAAAGACGGATATCACCACAGGTAGTTGCTGACATTATGAGCAAAAGGCCTCCTAACAGACGAGGAATTAAGTTTGAGGTCGGCGCCTCGCTTGAAGCACGGGACAGTCTGAAGAACTGGTATGTAGCCAACATAGAGAAGATCGACTATGAGGATGAGAAGGTGTTAGTCCACTATCGGCAGTGGAGCCACCGCTATGACGAGTGGTTCGACTGGGCCAGTCCGTACCTGAGGCCTGTGGAGAGGGTTCAGCTGAGGAGAGAGGCACGGCAGGACGACAGCTTCATCCCTGGATTTCATGTGAATGACAGAGTTCTTGCCAGTTGGTCCGACTGTCGATTTTATCCGGCAAAAGTTCTGGCTGTCAATAAAGAtgCATCCTACACAGTAAAGTTCTACGATGGTGTCGTCCAGACAGTCAAAGGAATCCATGTGAAGCCCTTCACCAAAGAGAGACGAAAGAAACTGAGTGACCAGAATGGAGAGAAGCCAGTGATACAACAGGCAGAAAAGGAAATCCAGGAGAATGAAGCCAATGGTGATAAACAAGCAGCAGGACAGACCAACTGTGTTCCTGAAAAAGATGAGGACGGGATCTCAGAAGTGAATGGAGAAGAAGGCGAACAAATGCGAATTAAAGTGGAAAATGAAAGTGTAAAAGAGGAGAGAGATTTGGAGGAAATAGGTCAACACAATTACAGTAAGTCACTTGTGAAGAAGGGCTCAGGGTTTGAGGAGAAAGAAGAGGAGGTCATGGTGAAGATGGAGGACTCTGCGCTGTTTGACTCTAATGTGAACTTCAGCGAGAGCACGGTAAAGAGGAACGAGACAGAGGAAACAGATGTCCTGGCACAACAAAAGAAGGAGGAAGTCGAAGAACAATGTCTTGTTCATGACAAAAAAGCACGGAGGCAGCGGATAAAAAGGAAGAGAAGACTTTCAATGGCACGAAGGAGCTCCAAAAAAAACAAGACTGATTCAGAAAAAAGTCATAATGATGGCAAGCCCAACAATCAGCAAACTCAAGGAAAAGAACCAGACTCCTTACATCTTACACAACCGTCCAATGGCACATCAGCATCTCAGGCTCAGTGCCAATCAGAAACCTTCAAGCCTACAGCAGTTAGAAAACAAGCATTTCACAATCCCAACCGGTTCAGCAGAGAGCCTCTGTATAGAGTCATCAGAAACCAGCCTCCACCGGTACTCTCTATCAACCTGGATCATAACCTGTATAAATGCAACACCCCTGGCTGCTCGAAGTCCTTCCGCAAAGCAAAACTCCTGCACTATCATATGAAGTACTACCATGGAGAGGAGTGCCCCATAGAACCAGAGCAGACCAGGGAAATGGACAAAAAGACCACACTTAATAGTCACGATGGCTCAAAGAAGAGATGCGTTACGTCACGCGAGTGTGCGCGGGTGACCGTGAAGAATCGCTCTCTAGCGCCTCCTACTGCCAGCACACAGAATTACCAGCAGTGGCCTTTACTGAAGGACAAGACCAGAGAGAATCAGCTAGATGACACTATGCAGAGATGCTACAACAAGGAAAGAGACAGGAGATTTATGGAAATGGAAAGTGTGAAGGAGCGCAACAGGCTGAAAGAGAAACAAAGGAGAGACTTCCTGCGAATAAAGttgaaggaaaagaaaaagatacGAAAAACCACATCAGATGAGGACAGTATTTCTGATTGGTCTTCTGAAAGCTGTGGGTGGAGTGAAGATGAAATGGAGGCGGATCTGGATGTTATCACCTCACCTCTTAGCTGTAGTTCTGTTGCTTCGACTACAGAAAGTCAGGAAACTGTGCGCTGTGTGTGCGAAGCAGACGAGGAGAATGACTTCATGTTACAGTGTGAAGAGTGTCTGTACTGGCAGCATGGGACCTGTATGGGCCTCCTGGAAGAGAATGTTCCAGAACGATATTCCTGCTTCATTTGCCGGGATTCTTCAGGTTTGGAAAGACGGGTGAGAGGTCAGAGACAGAGCCTGAGGTACTGGTATGACAGGGATTGGCTGAGCACTGGCCACATGTACGGCCTCTCTTTCCTGGAAAACTACTCCCATCAAAATGGCAAAAAGATTGCAGCCACCCATCAGCTGTTAGGGGACGTCCAGCATGTGGTTGAAGTCCTCAGTGGCCTGCAGCTCAAAATCAGCGTGCTACAGAACCAGACTCATCCAGATCTTAAGTTGTGGCGACAGCCGTGGAAGCCAACTGAAAGATCCAGGATGAAAAGCAAGGCTCTTCATGATGCAAAAACAGTTTCTTCTTCAGCAGGCTTGGAGACCATTGAAAATAAAGAGGCGTTTTCTTCATCCTTCCAGGACTACATCAGCAGTGAGCACTGCTACCAAAAACCACAAACTCTGTATCAGGTATTGGAGCCAAGGCTGGTACTAAAAACACGGGTAGAGTCACTGCTGGAAGACCGATTACACAGCACAGAAAGAGTGCCGATGAATGAACAACACTACAATGGAGACATGCTGAAGACTTCTAATAGTCAGCTCTTTAACCACAGCAAGGTTATAGGGGAGAAGTGTGAGGCGGGTGCAGATGGAGGTGGAGATAAAAGCGGAGCTCAGCCGCAGCAGTGGAAAGTCAACTTGCTGGATCATATCGAGACTGTTCAAGAAGAAGTCACTCACAGGATGGATTTCATCGAACGGGAGCTTGATGtgcttGAAAACTGGCTGGACTGCACGGGTGAGTTGGAGCCTCCAGAACCGCTGGACCGTCTGCCTGAACTCAAGCACAGCATCAAACAGTTGCTGAGTGAACTGGGAAAGGTGCAGCAGGTCGCTCTGACTTGTGCCACATGAGGGCGCCAGGACTTACTTCACTATCATCACAGGACGACTACCTCAGTTTAAAACATTCCTAAACCAGGCCACGAAACCAAAAAAGCCTATAGAATAGACTGAGAAAATGTGAAACCGAACATGCTGGGTTTTGTTGAATTAATACAGAATGTCACCAAACTCTTTATCACCTCACTTACAGCAAATGTTATTTATATCCATTTAATTCCTTCTGTTTCTCCAAAAGGAAATAACAAAATTCTTTAGGAGTATGTTTACTTAAAGGTTTACCAGATATGTCTTTGACATTTAATAATGCACAGCATGCTCACATTTCgtaaagggttagttcaaccCAAAACAAAAggtttgtcattatttactcatcctcatgtcttTCGTTCATCACTGGAACACAAATGAACATAATTTTAATCAAGTCTGAGATAGTTGTGTTTGTCCATTGATAGCCTATTTACCCCAAACGCTGACGCTTCAAAATATTTtgaaagaaagtaaataaatcagtttaaataAGTGATTAATGCGTGTCTTCTGTAGGCGTGATTGGATCATtagattaacagatttatgcttTTATTCGCATGAAtacatcataaaaatatataaaaactacacTTGCTTAGTGTATAAGAGCAAACCTTATTGGTTCTTGGTCATAAACCAAGCATGGCTCAGCTTCCATGACCAAATCTGTTTGCTGTAAACATTGTTTTCTGGTTATATGTGAATGAAAGCTTATATTAAGTCATGCAAAAGGTTATTTAAAGAGACGTGTCTTTTGGCCATTCAGTCTATTCTTTGTAACTCATGAATCTTTTTATGAGGCATTTGCAGTAAATAAGCTTTTTTTCTGGAGGAAAATAAATCTCTTATTTGATTACAAATGTCTTCATTTGCATATTTCTAATGCGTTAAGAACATGAGGTTGAGTAAACATTGTCAGATTTTTCATTCTGAGGTGAGCTTACTTTTTCAATATATTCTCACTTAGTCAAGAAGCAAATCAACTCAACATATACAAGCTAGATTTTGTCCTTAGGAAACGTTACCTATATTCAAACTGAAAGGTTAATCTCAATTGTTTAATCTTAACACCAATTTAGGAAGTCACCATTTGCCATCCACTCTTTAAAACGCTAATTAACCCTTAACCTCCTTGTAACTGGTTGGTTGTGAAGTCAAATGTATGTTTGCTctattatatttaaaagataAGCTGCTTAGAATGTTTAAGTGTTTTCTGAATATGGCTTATTTATTTCTGAAAAACTGTGAATATCATAATGACTGTAATCCTAAAATCAGAAACTTTTTTTCCAGAACTTGGAAATACTGAAATTCTCATTTCGAATGCATCTCAGTATTAAAGAGATAGatcacccaaaataaaaa

Function

symbol description
phf20a Predicted to enable metal ion binding activity. Predicted to be involved in histone acetylation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of MLL1 complex and NSL complex. Orthologous to human PHF20 (PHD finger protein 20).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016573 histone acetylation biological_process
GO:0071339 MLL1 complex cellular_component
GO:0044545 NSL complex cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-270 Predicted to enable metal ion binding activity. Predicted to be involved in histone acetylation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of MLL1 complex and NSL complex. Orthologous to human PHF20 (PHD finger protein 20).

Ensembl:

ensembl_id ENSDARG00000002750

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006786 True 4361 mRNA 0.43 17 25044082 25063586

Neighbor

gene id symbol gene type direction distance location
XLOC_003461 zgc:92107 coding upstream 868 24994705 ~ 25043214 (+)
XLOC_003460 sulf2a coding upstream 50857 24907469 ~ 24993225 (+)
XLOC_003459 timm17a coding upstream 137818 24900123 ~ 24906264 (+)
XLOC_003458 lmod1b coding upstream 149175 24889170 ~ 24894907 (+)
XLOC_003457 shisa4 coding upstream 155487 24877820 ~ 24888595 (+)
XLOC_003464 ndrg3a coding downstream 933 25064519 ~ 25155003 (+)
XLOC_003465 trpc4apa coding downstream 93788 25157374 ~ 25180330 (+)
XLOC_003466 NA coding downstream 118271 25181857 ~ 25228195 (+)
XLOC_003467 NA coding downstream 193226 25256812 ~ 25266235 (+)
XLOC_003468 cyldb coding downstream 213162 25276748 ~ 25291709 (+)
XLOC_003369 CR854846.2 misc upstream 8921000 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 12332086 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 12349819 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 12358483 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 12364054 12679732 ~ 12680028 (+)
XLOC_003447 BX072564.1 non-coding upstream 462968 24580579 ~ 24581114 (+)
XLOC_003442 NA non-coding upstream 733437 24120291 ~ 24310645 (+)
XLOC_003444 AL831791.1 non-coding upstream 865144 24178823 ~ 24178938 (+)
XLOC_003443 NA non-coding upstream 866431 24176418 ~ 24177651 (+)
XLOC_003441 FP102969.1 non-coding upstream 892865 24116083 ~ 24151217 (+)
XLOC_003487 NA non-coding downstream 765784 25829370 ~ 25830337 (+)
XLOC_003488 CR318604.1 non-coding downstream 1014361 26077947 ~ 26078061 (+)
XLOC_003489 NA non-coding downstream 1124931 26188517 ~ 26196145 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_02835681_02847361 PHF20 coding CI01000306 null 2835681 ~ 2849257 (+)