XLOC_003465 (trpc4apa)


Basic Information

Item Value
gene id XLOC_003465
gene name trpc4apa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25157374 ~ 25180330 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006795
AAGACGAAGTAATGGCGACGCTACTGGGGCCCGAGTCCCCTTGTATCGGTGGAAAGAAGCGGACTCGAAACAGGAATATCATCACCAGAATACGGCAAAGTCAGATCGGTGGCCGAGGCTTCAGCAGAGGGACGCAGCTCCCCGAAGTTCTTCTTCAGGAGAGGGATAAAAGGGCGAAATGGCACGGGATTCCTGTTTTACTCCAGGAGCTGTACGAGAGCAGCCACCTGAACACTGACTTCACCCGAACACACACTGTCCTGAAGGAGCTGTCATCTCTACTGTCTATGGAGGCCATGTCTTTTGTGACGGAGGACAGAAAGCCTGCGCAGGAGTCTACCTTTCCCAATACTTACACTTTTGATCTGTTTGGAGGTGTAGATtTACTGGTTGAACTTCTGATGAGACCTACCCTGACTACACTACAGAAGCCCAAAATGAATGATGACTTGGTAAAGGACTGCCTAAGCGTGTTGTATAACTGCTGCATATGTACTGAAGGAGTCACAAAAAGCCTGGCGTCAAGAGATGATTTTGTATTATTTCTGTTCACCTTGATGACAAACAAGAAGACATTTTTGCAAACAGCTACATTAATTGAGGATATTCTTGGAGTTAAGAAGGAAATGATACAGCTTGAGTGGATCCCGAATCTGTCAGGACTGGTTCAGAGCTTTGACCAGCAGCAGCTTGCCAACTTCTGTCGGATTCTCTCAGTCACCATATCTGAGCCTGACGTGGGGAATGATGACAAACACACACTTCTGGCTAAAAATGCACAGCAGAAACGCAACACCAGCCCCTCGCGTGCAGAGGTCAACCAGGTCACTCTGCTGAACATCCCTGGCTTCATTGAGCGTCTCTGTAAGTTGGCAACACGGAAGGTGTCTGAGGCAACCGGAACGTCAAATTTTCTGCAGGAACTGGAGGAGTGGTACACCTGGCTCGACAACACGCTAGTACTGGATGCTCTCATGCAGATAGCAACTGATGAAGCCGAGCACAGCAGCACAGAATCGTCTGATGAGAGTACATTGGCCACCATCCCGCTGAGACATCGCTTACCACAGTCCATGAAGATAGTCCATGAGATCATGTACAAGGTGGAAGTGCTTTACGTGCTTTGTGTCCTGCTCATGGGTCGACAGCGGAACCAGGTGCATAAAATGTTGGCGGAGTTTCGTTTGATTCCTGGACTCAACAACCTTTTCGACAAGCTCATCTGGAGGAAATACACCGCCTCTAATCATGTGGTTCACGGACAGAATGAAAACTGTGATTGTAGCCCGGAAATCTCATTTAAAATCCAGTTCTTGAGGCTTCTGCAGAGCTTCAGTGACCACCACGAAAATAAGTACCTACTTCTCAACGCTCAGGAGCTGAATGAGTTGAGTGCCATTTCCCTAAAGGCAAACATCCCTGAGGTGGAGGCATTAGTAAACACAGACAGGAGTTTAGTGTGTGATGGTAAAAAAGGGCTCCTCACGCGGCTCCTGACAGTTATGAAAAAAGAACCCCCAGACTCTTCCTTCAGATTCTGGCAGGCCAGAGCTGTTGAGAGCTTTCTGAGAGGAGCCACATCATATGCAGACCAGATGTTTTTGCTGAAGAGAGGCTTGCTGGAGCACATCCTCTTCTGCATCATTGACAGCGGCTGCAAGTCCAGAGATGTCCTGCAGAGCTACTTTGACCTGCTCGGGGAGCTTATGAAGTTCAATATTGATGCCTTCAAGAGATTCAACAAATATGTGAACACAGACGAAAAGTTCCAGGTGTTCCTCACACAGATCAACAGCTCTCTGGTTGACTCCAACATGCTGGTCCGCTGTATTGTGCTCTCGCTGGATCGCTTCGAGAGCCAGACGGAGGATGTGAAAGTGGTTGAAGTGCTCTCCGAGTGCTGTCTCCTGTCCTACATGGCTCGAGTGGAGAACAGGCTGTCCTTTCTTTTTAGGCTGGTCAACATCATCAACGTGCAGACCCTCACACAGGAGAACGTGAGTTGTCTTAACACCAGCCTGGTGATTCTGATGTTGGCCCGGAGGAGAGGCAAGCTCCCGTTTTACCTGAACGCCCTGCGGGAGAAGGAATATGCAGAGAAATATCCTGGATGCCTGCTCAACAACTTCCACAACCTGCTGCGCTTTTGGCAGCACCACTACCTCAACAAAGACAAGGACAGCACCTGCCTAGAGAATAGTTCCTGTATTCCCTTCAGTTTCTGGAAGGAGACAGTATCAGTTCTGCTCGGAGAGGACAGGACTTCTCCCTGTGCCATTATCAGCTACATAGACGAGCCTTACATGGAGCTGGACCGGGACCTTCTGGAGGATTGACTCTTGCGGGTGGGCTCAGGGAGGGGCTCACATGTTCCGCTCCGATTCGGTCCAGAGAGCATATAGTACAGCCTCCCGGCTCATCCCACTGCATGCTGCGGCTCAGTGAGCTGCCCTTTCTCTACTGGTGCCCATGTTCCACTGCTTCATCTCCAGGTCACCGGGTGCAAGCAGAGTCCTGCGAAGGATCGCCCACCCAGTCATTCATTCAACAGGAACGCAGTATCTGAACAGCTCAAGCCGAACCTTTGACCTGAAACTGTCTCGTCGTGTGTTTCGGAGGTGAAATCTTGTGGGGCCTTTTATACAGAAACGTACAAAGAAAATAATATTGCATCCCTGAATGATGACGATCTGACGATCGATGAACTGCACAGCCAGCCTTCTAAGAGATTTTCTCTCATTTTTGGATGAGGAAGTGTGGGATTGAGGAATGGTGAATTTGCCAAGCAGTCAGAAGGTTAACTGATGTTGAAGAGGCGAATGGCTCTCATGCTGGAGCGATGTCAAAATCTTTGTACAGTGTAGATGACAGGAAACAGAATTTGGTCGAGtctaatttattttctcacaTTTCTCTTGTGATTTTGCTCTCATATGATGAGCTTTGGTTTTCGTATTCTCTCCTTCCTTTCGTTAGGTTTTATCAAGCACATATATCAGATATGAGATTTTCAGttcttatatttttaattttgtataaattagtttttaacaATAGGTAATCAtcccttttcttttattttgtcacGATGAAACACTTCATATCCTGTGGCCACTGAAGGTGTTAAACTATGCAGGTTCACTCACACCATGGTCGGAAATATCCAGCTAGCCTTGCTAACCTCCATGCTGCCATCTGTCATTTGTTCTGTAGCAAACCACTAAATCACCATCTTCAAAACTTTACAGGCATAAGCCGTTGACAGTCTGTTGCTCTGGAAGACGGCGACTGGGAAGGTGCTGCTCCGCTGCGGTGGCTTTGTGCTGGATGTGGTAGCTGAGCTAGACTAGAAGCGCTAAACTAGAAACTTCCAATCAACTACCTCGTTTCACTGGTGTTGTTTTCTAACCCACTCCTATAGTTTAAGCATGCTGCAGCTGATTTCACTGTGTATGCAAACGTTCCTGTGTGTAAATGGCTAAATGTGTTTGACATTGAGAATTGCTTCGCTTTTACCTGTGGGTGTTTGCAGcttctcttgttttgtttttctttaaagcaGTTCCTTATACTGTCACGGTGCTTTGCTTTTGCCgaaacacaatttcatacaatTCATAAGAAGAGGAGGGAGTTTTTTGGTCACTTTCTTTGACCCCAGGAATGTGTAtggttgttgtattagttgtagtgTGAATGTGCTTTTTTCTGCTCTGAATGATTGCAACATCAACACAAAGGATCTGAATGTCTCTTCTTTATCCACAGGCCTTGGTTCACGTCTCGCATGGGTTGGGTTTTGTTTTAAATACCGATGTTTTCTTACTCTGAATGAATTCAGTCATACGTGGTAACCATGTCAAGCCCAGTAAACTTAATGCTTTAAATAAACCTGAATTCAATATATTGCCTCCGACA

Function

symbol description
trpc4apa Predicted to enable phosphatase binding activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be part of Cul4A-RING E3 ubiquitin ligase complex. Orthologous to human TRPC4AP (transient receptor potential cation channel subfamily C member 4 associated protein).

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0031464 Cul4A-RING E3 ubiquitin ligase complex cellular_component
GO:0019902 phosphatase binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-000330-3 Predicted to enable phosphatase binding activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be part of Cul4A-RING E3 ubiquitin ligase complex. Orthologous to human TRPC4AP (transient receptor potential cation channel subfamily C member 4 associated protein).

Ensembl:

ensembl_id ENSDARG00000018840

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006795 True 3918 mRNA 0.47 19 25157374 25180330

Neighbor

gene id symbol gene type direction distance location
XLOC_003464 ndrg3a coding upstream 2371 25064519 ~ 25155003 (+)
XLOC_003462 phf20a coding upstream 93788 25044082 ~ 25063586 (+)
XLOC_003463 NA coding upstream 97276 25059462 ~ 25060098 (+)
XLOC_003461 zgc:92107 coding upstream 114160 24994705 ~ 25043214 (+)
XLOC_003460 sulf2a coding upstream 164149 24907469 ~ 24993225 (+)
XLOC_003466 NA coding downstream 1527 25181857 ~ 25228195 (+)
XLOC_003467 NA coding downstream 76482 25256812 ~ 25266235 (+)
XLOC_003468 cyldb coding downstream 96418 25276748 ~ 25291709 (+)
XLOC_003469 top1l coding downstream 116036 25296366 ~ 25311677 (+)
XLOC_003470 fam83d coding downstream 147869 25328199 ~ 25336921 (+)
XLOC_003369 CR854846.2 misc upstream 9034292 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 12445378 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 12463111 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 12471775 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 12477346 12679732 ~ 12680028 (+)
XLOC_003447 BX072564.1 non-coding upstream 576260 24580579 ~ 24581114 (+)
XLOC_003442 NA non-coding upstream 846729 24120291 ~ 24310645 (+)
XLOC_003487 NA non-coding downstream 649040 25829370 ~ 25830337 (+)
XLOC_003488 CR318604.1 non-coding downstream 897617 26077947 ~ 26078061 (+)
XLOC_003489 NA non-coding downstream 1008187 26188517 ~ 26196145 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_02906259_02914960 TRPC4APA, TRPC4AP coding CI01000306 null 2906259 ~ 2916338 (+)
bowfin (Amia calva) AMCG00008136 trpc4ap,LOC106582896 coding CM030123.1 CM030123.1 43411209 ~ 43432086 (-)