XLOC_003476 (opn1lw2)


Basic Information

Item Value
gene id XLOC_003476
gene name opn1lw2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25481046 ~ 25483206 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006815
GGATAATCTTTCTGGCAATGAGCTGGTATAAAATGCCTCTGACACCGTCTGCCAGAACGTTGGTTGCGATTTCAACCACAATCGGAGAAGTAAGGGGCAAAGGACAGACCTGCCACCAACTCAGCGAGAGAAGAACACTGTGACAGGGTTTCCAAAATGGCAGAGTGGGCCAATGCGGCATTTGCCGCGAGACGGCGAGGGGACGAAACAACAAGGGACAACGCTTTCTCATATACCAACAGCAATAACACAAGGGATCCCTTTGAGGGTCCCAATTACCACATTGCCCCTCGATGGGTGTACAATGTTGCAACAGTCTGGATGTTCTTTGTGGTTGTCGCCTCAACCTTCACCAATGGCCTGGTACTGGTGGCCACGGCCAAATTCAAGAAGCTCCGTCACCCTCTCAACTGGATCTTGGTCAACCTTGCTATAGCTGATCTGGGAGAGACTCTGTTTGCCAGCACAATCAGCGTCATCAATCAGGTTTTCGGCTACTTTATACTCGGACATCCCATGTGTATTTTTGAAGGCTACACTGTGTCAGTATGTGGTATTGCTGGACTGTGGTCGTTGACTGTCATCTCTTGGGAAAGATGGGTGGTTGTCTGTAAACCATTTGGAAATGTCAAGTTTGATGGTAAATGGGCATCTGCTGGCATTATCTTCTCCTGGGTTTGGGCTGCTGTTTGGTGTGCACCTCCCATCTTTGGCTGGAGCAGGTATTGGCCTCATGGTCTGAAGACCTCCTGTGGACCTGATGTGTTTGGAGGAAACGAGGACCCCGGAGTCCAGTCCTACATGCTGGTCCTAATGATCACCTGTTGCATCCTTCCTCTTGCTATCATCATTCTCTGCTACATTGCTGTGTTCCTGGCCATCCATGCTGTTGCCCAGCAGCAGAAGGATTCTGAGTCCACACAGAAGGCCGAGAAGGAAGTGTCCAGAATGGTGGTTGTCATGATCCTTGCTTTCTGCCTTTGTTGGGGTCCGTACACGGCCTTTGCCTGCTTTGCTGCTGCAAACCCAGGCTATGCCTTCCACCCACTGGCAGCAGCCATGCCTGCCTACTTTGCCAAGAGCGCCACCATCTACAACCCCATCATTTATGTCTTCATGAACCGACAGTTCCGCGTATGCATCATGCAGCTCTTTGGAAAGAAGGTGGATGATGGCTCTGAGGTGTCCACATCCAAAACAGAAGTGTCTTCTGTGGCTCCTGCATAAGTCTTACGTGATTTATAGCTCCTGTTGAACAAGAGGGAAGAACTGGACTTTCAGACTCCAAGATGCAATAGTCTTGACTGTACATATGTAGGCAAAACTCCTCTGAAGGAAACTGTTTTATGGCAATGCTGGACTCAAACTGAACACCATATAGTAAGTCCTGAGTGGATTTATTTTGCGATGCAATGCTGTTATTCAAATCTTTTATGAAAGTTCTCTCATGCTGAAGAATGTAAGAAAGACTGGTTCGATGAATAATGTGAAAACAATTATGACACGTATTGTTGTTGTCACAGAGCTATGTTTTTTAGATccaaatgcaaatgtaaaaaggagaaaaaaataaatttttatgttatttcaATGTTTTCTGAAGAAAATAAATCATGCAGCAAAATGATATGTTGTACTCTTC
>TCONS_00006816
GGTTGCGATTTCAACCACAATCGGAGAAGTAAGGGGCAAAGGACAGACCTGCCACCAACTCAGCGAGAGAAGAACACTGTGACAGGGTTTCCAAAATGGCAGAGTGGGCCAATGCGGCATTTGCCGCGAGACGGCGAGGGGACGAAACAACAAGGGACAACGCTTTCTCATATACCAACAGCAATAACACAAGGGATCCCTTTGAGGGTCCCAATTACCACATTGCCCCTCGATGGGTGTACAATGTTGCAACAGTCTGGATGTTCTTTGTGGTTGTCGCCTCAACCTTCACCAATGGCCTGGTACTGGTGGCCACGGCCAAATTCAAGAAGCTCCGTCACCCTCTCAACTGGATCTTGGTCAACCTTGCTATAGCTGATCTGGGAGAGACTCTGTTTGCCAGCACAATCAGCGTCATCAATCAGGTTTTCGGCTACTTTATACTCGGACATCCCATGTGTATTTTTGAAGGCTACACTGTGTCAGTATGTGGTAAGTTACTACACACAGAAAGCAAACTGAATAGTGTGCTGGACTGAAGATTTAGGAGGTTTTTAATGATATTTACCAACACAGGTATTGCTGGACTGTGGTCGTTGACTGTCATCTCTTGGGAAAGATGGGTGGTTGTCTGTAAACCATTTGGAAATGTCAAGTTTGATGGTAAATGGGCATCTGCTGGCATTATCTTCTCCTGGGTTTGGGCTGCTGTTTGGTGTGCACCTCCCATCTTTGGCTGGAGCAGGTATTGGCCTCATGGTCTGAAGACCTCCTGTGGACCTGATGTGTTTGGAGGAAACGAGGACCCCGGAGTCCAGTCCTACATGCTGGTCCTAATGATCACCTGTTGCATCCTTCCTCT
>TCONS_00006817
GGTTGCGATTTCAACCACAATCGGAGAAGTAAGGGGCAAAGGACAGACCTGCCACCAACTCAGCGAGAGAAGAACACTGTGACAGGGTTTCCAAAATGGCAGAGTGGGCCAATGCGGCATTTGCCGCGAGACGGCGAGGGGACGAAACAACAAGGGACAACGCTTTCTCATATACCAACAGCAATAACACAAGGGATCCCTTTGAGGGTCCCAATTACCACATTGCACCTCCCATCTTTGGCTGGAGCAGGTATTGGCCTCATGGTCTGAAGACCTCCTGTGGACCTGATGTGTTTGGAGGAAACGAGGACCCCGGAGTCCAGTCCTACATGCTGGTCCTAATGATCACCTGTTGCATCCTTCCTCTTGCTATCATCATTCTCTGCTACATTGCTGTGTTCCTGGCCATCCATGCTGTTGCCCAGCAGCAGAAGGATTCTGAGTCCACACAGAAGGCCGAGAAGGAAGTGTCCAGAATGGTGGTTGTCATGATCCTTGCTTTCTGCCTTTGTTGGGGTCCGTACACGGCCTTTGCCTGCTTTGCTGCTGCAAACCCAGGCTATGCCTTCCACCCACTGGCAGCAGCCATGCCTGCCTACTTTGCCAAGAGCGCCACCATCTACAACCCCATCATTTATGTCTTCATGAACCGACAGTTCCGCGTATGCATCATGCAGCTCTTTGGAAAGAAGGTGGATGATGGCTCTGAGGTGTCCACATCCAAAACAGAAGTGTCTTCTGTGGCTCCTGCATAAGTCTTACGTGATTTATAGCTCCTGTTGAACAAGAGGGAAGAACTGGACTTTCAGACTCCAAGATGCAATAGTCTTGACTGTACATATGTAGGCAAAACTCCTCTGAAGGAAACTGTTTTATGGCAATGCTGGACTCAAACTGAACACCATATAGTAAGTCCTGAGTGGATTTATTTTGC
>TCONS_00006818
TTTCAACCACAATCGGAGAAGTAAGGGGCAAAGGACAGACCTGCCACCAACTCAGCGAGAGAAGAACACTGTGACAGGTACAATCATTGTAAATTTGACCATCTTTGGTCACACAAAAATAGGCAAATGGAAATAATTCTTCTATTTGCTTGATCTTCAGGGTTTCCAAAATGGCAGAGTGGGCCAATGCGGCATTTGCCGCGAGACGGCGAGGGGACGAAACAACAAGGGACAACGCTTTCTCATATACCAACAGCAATAACACAAGGGATCCCTTTGAGGGTCCCAATTACCACATTGCCCCTCGATGGGTGTACAATGTTGCAACAGTCTGGATGTTCTTTGTGGTTGTCGCCTCAACCTTCACCAATGGCCTGGTACTGGTGGCCACGGCCAAATTCAAGAAGCTCCGTCACCCTCTCAACTGGATCTTGGTCAACCTTGCTATAGCTGATCTGGGAGAGACTCTGTTTGCCAGCACAATCAGCGTCATCAATCAGGTTTTCGGCTACTTTATACTCGGACATCCCATGTGTATTTTTGAAGGCTACACTGTGTCAGTATGTGGTATTGCTGGACTGTGGTCGTTGACTGTCATCTCTTGGGAAAGATGGGTGGTTGTCTGTAAACCATTTGGAAATGTCAAGTTTGATGGTAAATGGGCATCTGCTGGCATTATCTTCTCCTGGGTTTGGGCTGCTGTTTGGTGTGCACCTCCCATCTTTGGCTGGAGCAGATTGGCCTCATGGTCTGAAGACCTCCTGTGGACCTGATGTGTTTGGAGGAAACGAGGACCCCGGAGTCCAGTCCTACATGCTGGTCCTAATGATCACCTGTTGCATCCTTCCTCT

Function

symbol description
opn1lw2 Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including endocrine system; heart; liver; red sensitive photoreceptor cell; and visual system. Orthologous to human OPN1MW2 (opsin 1, medium wave sensitive 2).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0007165 signal transduction biological_process
GO:0001750 photoreceptor outer segment cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-141 Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including endocrine system; heart; liver; red sensitive photoreceptor cell; and visual system. Orthologous to human OPN1MW2 (opsin 1, medium wave sensitive 2).

Ensembl:

ensembl_id ENSDARG00000044861

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006815 False 1642 mRNA 0.46 7 25481046 25483206
TCONS_00006816 False 862 lncRNA 0.49 4 25481107 25482237
TCONS_00006817 False 934 processed_transcript 0.50 7 25481107 25482970
TCONS_00006818 True 851 lncRNA 0.48 4 25481115 25482237

Neighbor

gene id symbol gene type direction distance location
XLOC_003475 opn1lw1 coding upstream 1009 25477643 ~ 25480037 (+)
XLOC_003474 opn1sw2 coding upstream 5643 25459697 ~ 25475403 (+)
XLOC_003473 si:dkey-13a21.4 coding upstream 45124 25430851 ~ 25435922 (+)
XLOC_003472 adnpa coding upstream 72410 25403561 ~ 25408636 (+)
XLOC_003471 si:dkeyp-97e7.9 coding upstream 83917 25388747 ~ 25397129 (+)
XLOC_003477 gnl3l coding downstream 2568 25485774 ~ 25502491 (+)
XLOC_003478 tfe3b coding downstream 21009 25504215 ~ 25519837 (+)
XLOC_003479 cxxc1b coding downstream 56492 25539698 ~ 25550845 (+)
XLOC_003480 mbd1b coding downstream 76866 25560072 ~ 25576199 (+)
XLOC_003481 ccdc120 coding downstream 100744 25583950 ~ 25618583 (+)
XLOC_003369 CR854846.2 misc upstream 9357964 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 12769050 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 12786783 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 12795447 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 12801018 12679732 ~ 12680028 (+)
XLOC_003467 NA non-coding upstream 214811 25256812 ~ 25266235 (+)
XLOC_003466 NA non-coding upstream 252851 25181857 ~ 25228195 (+)
XLOC_003463 NA non-coding upstream 420948 25059462 ~ 25060098 (+)
XLOC_003447 BX072564.1 non-coding upstream 899932 24580579 ~ 24581114 (+)
XLOC_003444 AL831791.1 non-coding upstream 1302108 24178823 ~ 24178938 (+)
XLOC_003487 NA non-coding downstream 346164 25829370 ~ 25830337 (+)
XLOC_003488 CR318604.1 non-coding downstream 594741 26077947 ~ 26078061 (+)
XLOC_003489 NA non-coding downstream 705311 26188517 ~ 26196145 (+)
XLOC_003490 NA non-coding downstream 742876 26226082 ~ 26234069 (+)
XLOC_003497 NA non-coding downstream 1219751 26702957 ~ 26709080 (+)

Expression


Co-expression Network