XLOC_034766 (si:dkey-62k3.6)


Basic Information

Item Value
gene id XLOC_034766
gene name si:dkey-62k3.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 26567864 ~ 26579465 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00067654
GATGTTAAAGATAACAGCACAATCACAGGTGCCAGCATTACTTCAATGCAAGCTTAGTATTATTTTCCTGCTTCCTacaattttttccaacacaaaggAACTCCTCTAAAAAGGGCATATTTGTGGAGCATCTCAAGAGGAAAAACCTTCAGAGTTTTAATAGATTAGGCTGAAAACCAGCAAGAAAATCCCATGTCTCAGCCAGAAGAACCAGCATCGGCTCCTCCAGCCACAGAACTTGAGCCAGACAACCAACAACCTCCAGTTCAATCCGATTCAAATCCTGCTCCAGATAAACAACCACCTCCAATGGAAATACAATCTGAACCAATTTATGAATTTATTGAGGATCAGATCTATGATGAGCCTACACCAGATCCCCCATCTGCAGGACTCCAGACTAAGGATCAAACACCTCAAGTTCAGTCAGTCTTGAATCAGACTAGTCCAGTCAATGTAGTAGTGCCATACCCCATTCAGTCATCTGGAGGCAATCCAGTACAAAACAACTTTCAAACTGTCACGTCTCAGCCAGCAAGTCTTGCACCAACTCCTCTACCTGCAGGGCCTCAGCCACAGACTCAAACCCTTCCAGGCTACACAGTAGTTCAGCGCAACTATCCTGTTGGAGGAGTACCTGGAGGGGCTACTCTACCTGCAGGCCTCCAGTCAAATAATCAGCCACCAGTTCAACTAGTCCTAATTCAGGAAGGTGCAGGCTATCCAGTCCAAAACACTCTTCCAAATCCCTTGCCTCAGGGAAAAAGTCCTCCATCGACTTCTTCAGATGCAGAACTCCAGCAACAAAATCAGCCACCACCAGCTCAACTAATCACAAACCAGTGTGATCCAAATAATCCAGCGCAAGTTCAAGCATATCCAGCACCTGCAGTTCCACCAGTGATTTTAACTTATGGAATACCACCTGGCCTTGAGTATCTCACTCAGGTTGACCAGGTCCTTGTTCGCCAAAAAATTCAGTGTATAAAAATACTCACCTGCTATCAGCCTAGCAACCAGTATGAGATCAAAAACAGCATTGGGCAAGAGGTTTACCGTGTCAAAGAAGAGAGCGATTGCTTCGCACGCAGTGTCTTAGGTTCAATTCACAATTTTAAATTGCGAATTGAAAACAGTTTGGGCCAAGAAGTCATCCAGATGGAAAAACCAATGCAATGCTACCTACAAGAGATTGCAATACAGGCTCCCCCGGGAATAACTATAGGCTATGTAAAACAAGACTGGTCCTTTTTGAACCCAAAATTCTCTGTCATAGGCCCCAATAATGAGGTACAGCTGGCAATCCATGGGCCCTTCCTTCCCTTTGATTGCTGTAGTGAAGTAATCTTTGAGGTAAAAAGCCTGTTGTATGGGCAGACGATTGGTCGAATCATAAAGGAGCAAAGTAGTTTCATTTCAACATTCTTTGCTGATGACAGCAACTTTCGTATTGAGTTCCCACTGGACTTGGATGTTAAAATAAAGGCTGTACTACTGGGCGCTTGCTTCCTTATTGACACCATATTCTATAACAAAAATGGAActttattattcaaattattgcGGGGACTTGTATAAGACAAAAGCTAAGTTTCAAAAATTAACTGTCCATTAAGGCactacaaaaacattatttttacttgcaaagttttttatatacaagtatttttttgtttttttcccctacCTTTTAATGTTTA
>TCONS_00067655
ATGTTTATGATGTGTAATTTTTGTGCGTTTCAGGTTGACCAGGTCCTTGTTCGCCAAAAAATTCAGTGTATAAAAATACTCACCTGCTATCAGCCTAGCAACCAGTATGAGATCAAAAACAGCATTGGGCAAGAGGTTTACCGTGTCAAAGAAGAGAGCGATTGCTTCGCACGCAGTGTCTTAGGTTCAATTCACAATTTTAAATTGCGAATTGAAAACAGTTTGGGCCAAGAAGTCATCCAGATGGAAAAACCAATGCAATGCTACCTACAAGAGATTGCAATACAGGCTCCCCCGGGAATAACTATAGGCTATGTAAAACAAGACTGGTCCTTTTTGAACCCAAAATTCTCTGTCATAGGCCCCAATAATGAGGTACAGCTGGCAATCCATGGGCCCTTCCTTCCCTTTGATTGCTGTAGTGAAGTAATCTTTGAGGTAAAAAGCCTGTTGTATGGGCAGACGATTGGTCGAATCATAAAGGAGCAAAGTAGTTTCATTTCAACATTCTTTGCTGATGACAGCAACTTTCGTATTGAGTTCCCACTGGACTTGGATGTTAAAATAAAGGCTGTACTACTGGGCGCTTGCTTCCTTATTGACACCATATTCTATAACAAAAATGGAActttattattcaaattattgcGGGGACTTGTATAA
>TCONS_00067656
GCACAATCACAGGTGCCAGCATTACTTCAATGCAAGCTTAGTATTATTTTCCTGCTTCCTacaattttttccaacacaaaggAACTCCTCTAAAAAGGGCATATTTGTGGAGCATCTCAAGAGGAAAAACCTTCAGAGTTTTAATAGATTAGGCTGAAAACCAGCAAGAAAATCCCATGTCTCAGCCAGAAGAACCAGCATCGGCTCCTCCAGCCACAGAACTTGAGCCAGACAACCAACAACCTCCAGTTCAATCCGATTCAAATCCTGCTCCAGATAAACAACCACCTCCAATGGAAATACAATCTGAACCAATTTATGAATTTATTGAGGATCAGATCTATGATGAGCCTACACCAGATCCCCCATCTGCAGGACTCCAGACTAAGGATCAAACACCTCAAGTTCAGTCAGTCTTGAATCAGACTAGTCCAGTCAATGTAGTAGTGCCATACCCCATTCAGTCATCTGGAGGCAATCCAGTACAAAACAACTTTCAAACTGTCACGTCTCAGCCAGCAAGTCTTGCACCAACTCCTCTACCTGCAGGGCCTCAGCCACAGACTCAAACCCTTCCAGGCTACACAGTAGTTCAGCGCAACTATCCTGTTGGAGGAGTACCTGGAGGGGCTACTCTACCTGCAGGCCTCCAGTCAAATAATCAGCCACCAGTTCAACTAGTCCTAATTCAGGAAGGTGCAGGTAATCTAGCAACTCAGCAGGTTCAGCCATATCCAGGTAAACACTGA

Function

symbol description
si:dkey-62k3.6 Predicted to enable phospholipid scramblase activity. Predicted to act upstream of or within plasma membrane phospholipid scrambling. Orthologous to human PLSCR4 (phospholipid scramblase 4).

GO:

id name namespace
GO:0017121 plasma membrane phospholipid scrambling biological_process
GO:0017128 phospholipid scramblase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-160728-111 Predicted to enable phospholipid scramblase activity. Predicted to act upstream of or within plasma membrane phospholipid scrambling. Orthologous to human PLSCR4 (phospholipid scramblase 4).

Ensembl:

ensembl_id ENSDARG00000091614

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00067654 False 1700 mRNA 0.42 13 26567864 26579465
TCONS_00067655 False 663 mRNA 0.40 5 26567986 26571994
TCONS_00067656 True 749 lncRNA 0.46 6 26576196 26579449

Neighbor

gene id symbol gene type direction distance location
XLOC_034765 NA coding downstream 1648 26555150 ~ 26566216 (-)
XLOC_034764 senp3b coding downstream 35775 26518843 ~ 26532089 (-)
XLOC_034763 eif4a1a coding downstream 49778 26510827 ~ 26518086 (-)
XLOC_034762 sox19b coding downstream 69917 26494583 ~ 26497947 (-)
XLOC_034761 mblac1 coding downstream 100460 26459360 ~ 26467404 (-)
XLOC_034767 plscr3b coding upstream 1036 26580501 ~ 26603743 (-)
XLOC_034768 phf23b coding upstream 36776 26616241 ~ 26627253 (-)
XLOC_034769 CT573817.1 coding upstream 101403 26680868 ~ 26721281 (-)
XLOC_034770 si:ch211-107p11.3 coding upstream 261671 26841136 ~ 26844064 (-)
XLOC_034771 alx4a coding upstream 314223 26893688 ~ 26924903 (-)
XLOC_034755 NA non-coding downstream 225912 26335477 ~ 26341952 (-)
XLOC_034756 NA non-coding downstream 226696 26340598 ~ 26341168 (-)
XLOC_034754 NA non-coding downstream 237169 26330338 ~ 26330695 (-)
XLOC_034752 NA non-coding downstream 286147 26275775 ~ 26281717 (-)
XLOC_034772 NA non-coding upstream 402638 26982103 ~ 26983922 (-)
XLOC_034773 NA non-coding upstream 405480 26984945 ~ 26995403 (-)
XLOC_034779 BX072554.4 non-coding upstream 1578089 28157554 ~ 28157668 (-)
XLOC_034780 BX072554.3 non-coding upstream 1700706 28280171 ~ 28280285 (-)
XLOC_034787 CU467654.1 non-coding upstream 1998984 28578449 ~ 28578565 (-)

Expression


Co-expression Network