XLOC_003477 (gnl3l)


Basic Information

Item Value
gene id XLOC_003477
gene name gnl3l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25485774 ~ 25502491 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006819
TCCAATACTGtcgacttttattttgaaagccCGTCGTTGTCGAAGTCTTCACACACACTAGCACTTTAAAGCATTCACACGTGCAGTCATGTCCAAAGCAAAGCAAAAGCGAGCGAAACGCCTGGGATTTTGTGGCAAAAAGCCTAAAGATGGAACTCAGTCTCATGGAGGGAAGAAGGATCCTGGAGTACCTAATGTGCGCAGCTTCAAAGAACATAGTCAGAGACAAGCTGAACTACGAAAACAGAGGTTGGAGGAGCAACAGGAGAGGCAGAGGCTGTCAAGAGAGAAAGAGATGATGAAGAGAAGAAGTCTGGACAGTTACCAGAAAGACATACAGTTACGACAGAGAGAGTTCGAACAGAGGGAAATCCAGATGCAAAATCTAGAGAAGCATGTCAACTTTGAGACTGAGAACTCAAGAAAAGCATACTGTAGAGAATTTAAAAAGGTAATAGAGGCTGCAGATGTTATTCTAGAGGTTCTGGATGCCAGAGACCCTTTAGGCTGCCGCTGTCCACAGGTTGAACAGGCTGTTGTCCAAAGTGGAACCAACAAAAAAATTGTACTTGTTCTAAATAAAATTGACTTGGTGTCCAAGGATATTGTGGAAAAATGGATCAAGTATCTTCGCAATGAGTTTCCTACCGTGGCTTTCAAATCCTCCACTCAGCAGCAGAACAAAAATTTGAAACGCAGTCGTGTGCCTGTGACTCAGGCTACTCAAGAGCTTCTGGAAAGCAGTGCATGCGTCGGAGCAGATTGCTTAATGAAATTATTAGGAAACTACTGCCGGAACCAAGATATAAAAACTGCCATTACTGTAGGAGTGGTTGGTTTTCCGAATGTGGGGAAAAGCAGTTTAATTAACAGCTTAAAGCGTGCTCGGGCATGTAATGTTGGAGCAACGCCTGGAGTAACAAAGTGTTTACAGGAGGTCCATCTAGACAAACACATCAAACTTTTAGATTGTCCTGGTATCGTCATGGCCACTTCAACCAGTGATGCTGCCATGATCCTACGCAACTGTGTGAAGATCGAACAGCTAGTAGACCCATTGCCAGCTGTTGAAGCCATATTGAGGCGCTGCAATAAAATGCAGATTATAGATCATTATGGAATCCCAGACTTCCAGACGGCACACGAGTTCCTGGCCTTACTTGCCCGACGTCAAGGCAAGCTGAGGAAAGGAGGACTTCCAGACTCTGACAAAGCTGCCAAGAGCGTTCTCATGGATTGGACAGGGGGTCGCATTAGTTACTTCACACATCCTCCTGAAACGCACACATTACCCACTCATGTCAGCGCTGAGATTGTAGCAGAGATGGGCAAAGCGTTTGACTGGGATGAACTGGAGAAGGGCAATCTAGAGGCTTTGGCTGAGTGCGGCACGTCTGATGTACAGATGGGATTCTGCATGGCTACCTCTGGATTGACACAAGGAGGTCAAGGGGAAGATCTGGCAGAATTGCAGATGGATGAACCATTAGATGACCCTGAACTTCAAGACAAGGTTGAATTAATGGATGCAGATGAGGATCCAGAGTTTGGACCGATGACCGTTGAGCTCAAAGTTCCCAAGACAAAGAGTGGTGTTGTCGAAGCTGTCGGACCAAAGCCTGTGGATCTAAAGGACATTCTGGATATTGATCCACTCCTGCAAGGCCAGGCTCTTCAGGCAGCCAACAAAAAGAGGAAGAAGCAGCAAAAGAGAGCTGataaaCTCGGCACCAAACTTTCAGATTCTCTCACGGCAGCTTTGAATTTTTCCTTCTCTGACAGCTGATGTGATGAGCATTAAGTCAGGACGCTCAGAGAAGTTCATTCTGATTTCATCTGTGGTCGAAAAAACATCACcgttttgtatatttaaatgatCTTCAATTTAAAGTAtgcaaataaattatattttctcTGAGGAGAATGACTTCA

Function

symbol description
gnl3l Predicted to enable GTP binding activity. Acts upstream of or within rRNA processing. Predicted to be active in nucleolus. Orthologous to human GNL3L (G protein nucleolar 3 like).

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0005730 nucleolus cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040723-1 Predicted to enable GTP binding activity. Acts upstream of or within rRNA processing. Predicted to be active in nucleolus. Orthologous to human GNL3L (G protein nucleolar 3 like).

Ensembl:

ensembl_id ENSDARG00000020595

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006819 True 1932 mRNA 0.45 15 25485774 25502491

Neighbor

gene id symbol gene type direction distance location
XLOC_003476 opn1lw2 coding upstream 2568 25481046 ~ 25483206 (+)
XLOC_003475 opn1lw1 coding upstream 5737 25477643 ~ 25480037 (+)
XLOC_003474 opn1sw2 coding upstream 10371 25459697 ~ 25475403 (+)
XLOC_003473 si:dkey-13a21.4 coding upstream 49852 25430851 ~ 25435922 (+)
XLOC_003472 adnpa coding upstream 77138 25403561 ~ 25408636 (+)
XLOC_003478 tfe3b coding downstream 1724 25504215 ~ 25519837 (+)
XLOC_003479 cxxc1b coding downstream 37207 25539698 ~ 25550845 (+)
XLOC_003480 mbd1b coding downstream 57581 25560072 ~ 25576199 (+)
XLOC_003481 ccdc120 coding downstream 81459 25583950 ~ 25618583 (+)
XLOC_003482 comtb coding downstream 117401 25619892 ~ 25631442 (+)
XLOC_003369 CR854846.2 misc upstream 9362692 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 12773778 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 12791511 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 12800175 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 12805746 12679732 ~ 12680028 (+)
XLOC_003467 NA non-coding upstream 219539 25256812 ~ 25266235 (+)
XLOC_003466 NA non-coding upstream 257579 25181857 ~ 25228195 (+)
XLOC_003463 NA non-coding upstream 425676 25059462 ~ 25060098 (+)
XLOC_003447 BX072564.1 non-coding upstream 904660 24580579 ~ 24581114 (+)
XLOC_003444 AL831791.1 non-coding upstream 1306836 24178823 ~ 24178938 (+)
XLOC_003487 NA non-coding downstream 326879 25829370 ~ 25830337 (+)
XLOC_003488 CR318604.1 non-coding downstream 575456 26077947 ~ 26078061 (+)
XLOC_003489 NA non-coding downstream 686026 26188517 ~ 26196145 (+)
XLOC_003490 NA non-coding downstream 723591 26226082 ~ 26234069 (+)
XLOC_003497 NA non-coding downstream 1200466 26702957 ~ 26709080 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_03132695_03139713 GNL3L coding CI01000306 null 3132695 ~ 3139724 (+)