XLOC_034796 (exosc6)


Basic Information

Item Value
gene id XLOC_034796
gene name exosc6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 29163592 ~ 29164818 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00067700
CGAAGCATTTGATTCCTCGAGGAAGACTGAGTAGTTTCACCGCTGCAAAGTAAGCTATGCTCTCGTAAACACGTGGGTTTATTAAAAATGCCGGTTGACACAAAACGTATTCGTGGACCGGAAGAGTCGCAGTCCCCGTTGCTCTTTCTGTCCCCGGACAAAGCCCCTAAAGCCCCCAGCAGCAGGCAGGGCGTCCGCGGGAACGGAGATGTGCGGCCGGTGTTTGCGCGCTGCGGGCTAGTCAGCCAGGCGAAAGGCTCCGCGTACATCGAGGCTGGAAACACCAAGATCATCTGCTCGGTGTACGGGCCGAAGGAAACGGAACGAAGGGACGAAACGGACATGAAAACCGGTCGGCTGGTTTGCGACTTCAGGCTCGCGCCGTTTTCCTGCGTGAAACGGGGAGCCTGGATCCAGGGCAGCGAGGAGAGAGACCTGTCCGCCACTCTGATGGAGAGCTTGCGGCCGGGAGTTTGCCTACACAGATACCCGCGCTCTCAGATTGACGTGAATGTCATGGTTTTGGAGAATGACGGCTCGGTTCTGGCGCACGCGGTGACCTGCGCTTCGATGGCCCTGGCGGACGCCGGTATCGAGATGTACGACATTGTTTTGGGTTGCACGCTGCGGCAGAGCGGAAACGCGTGTCTCGTTGACCCGTCATACGCCGAGGAGTGCGGGAGCTGGCAGGAGGGCTACGGAGACAACCAGGGGTGCGTCACCTTGGCTCTGCTTCCCAATCTGAATCAGGTGTCTGGCCTGAATGCGGACGGGGAGATGCGGGAGGACACTCTGACCGAGGCTATGAGAACCTGCATGGACGGCTGTCATAAACTCTACCCGGTGGTTCAACAAGCGCTGACGCGGGCTGTCAAGAAGAAAGCGCCTCCGCCTGAGAAATAGACTTTTGTTTGGCGCTTCTTTTTGAGAACAGTTAAAATGATTacaattgttgaaattttgtacatttaaatgtGTAATAATGTCGAACCAACTAAATAAACTCCTCTGCAGTTTTATCTCCTCTATGATCTTGTATTTGTTCATTTCAGTGGTGTTGCTGATTTTGTATTCAGATTATTTCCCCCTAAACGAAAATCTCCTGTCGCACCCTCAATGCCATCCATggtgtagatcaggggtgcccaaactttttcttatgaggGGCCAAAAAAGTTGATTATAGGTGGTGAGCTGAAGTTAAATAAACCAAAGTATTACattaca

Function

symbol description
exosc6 Predicted to enable RNA binding activity. Predicted to be involved in RNA metabolic process. Predicted to act upstream of or within rRNA processing. Predicted to be located in cytoplasm and nucleus. Predicted to be part of cytoplasmic exosome (RNase complex) and nuclear exosome (RNase complex). Predicted to be active in nucleolus. Is expressed in forebrain; hindbrain; immature eye; midbrain; and optic tectum. Orthologous to human EXOSC6 (exosome component 6).

GO:

id name namespace
GO:0034427 nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' biological_process
GO:0016075 rRNA catabolic process biological_process
GO:0071028 nuclear mRNA surveillance biological_process
GO:0071051 polyadenylation-dependent snoRNA 3'-end processing biological_process
GO:0006364 rRNA processing biological_process
GO:0034475 U4 snRNA 3'-end processing biological_process
GO:0000176 nuclear exosome (RNase complex) cellular_component
GO:0000177 cytoplasmic exosome (RNase complex) cellular_component
GO:0000178 exosome (RNase complex) cellular_component
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03018 RNA degradation
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-050522-362 Predicted to enable RNA binding activity. Predicted to be involved in RNA metabolic process. Predicted to act upstream of or within rRNA processing. Predicted to be located in cytoplasm and nucleus. Predicted to be part of cytoplasmic exosome (RNase complex) and nuclear exosome (RNase complex). Predicted to be active in nucleolus. Is expressed in forebrain; hindbrain; immature eye; midbrain; and optic tectum. Orthologous to human EXOSC6 (exosome component 6).

Ensembl:

ensembl_id ENSDARG00000036060

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00067700 True 1227 mRNA 0.52 1 29163592 29164818

Neighbor

gene id symbol gene type direction distance location
XLOC_034795 CR352249.1 coding downstream 8081 29155395 ~ 29155511 (-)
XLOC_034794 fbxl8 coding downstream 47820 29108956 ~ 29115772 (-)
XLOC_034793 thap11 coding downstream 120517 29041465 ~ 29043075 (-)
XLOC_034792 nrn1lb coding downstream 141835 29015846 ~ 29021757 (-)
XLOC_034791 CU464087.1 coding downstream 446033 28709931 ~ 28717559 (-)
XLOC_034797 herc1 coding upstream 24282 29189100 ~ 29271738 (-)
XLOC_034798 dapk2a coding upstream 113762 29278580 ~ 29292206 (-)
XLOC_034799 CR450827.2 coding upstream 128941 29293759 ~ 29295281 (-)
XLOC_034800 trpm1a coding upstream 147558 29312376 ~ 29341364 (-)
XLOC_034801 dre-mir-204-2 coding upstream 172178 29336996 ~ 29337119 (-)
XLOC_034787 CU467654.1 non-coding downstream 585027 28578449 ~ 28578565 (-)
XLOC_034780 BX072554.3 non-coding downstream 883307 28280171 ~ 28280285 (-)
XLOC_034779 BX072554.4 non-coding downstream 1005924 28157554 ~ 28157668 (-)
XLOC_034803 CR450827.5 non-coding upstream 195170 29359988 ~ 29361366 (-)
XLOC_034804 CR450827.7 non-coding upstream 213612 29378430 ~ 29379784 (-)
XLOC_034805 CR450827.4 non-coding upstream 225249 29390067 ~ 29391425 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000026_04416862_04417674 EXOSC6 coding CI01000026 null 4416807 ~ 4417984 (-)
bowfin (Amia calva) AMCG00020338 NA coding CM030127.1 CM030127.1 16616416 ~ 16617243 (+)