XLOC_003486 (si:dkey-183j2.10)


Basic Information

Item Value
gene id XLOC_003486
gene name si:dkey-183j2.10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25735478 ~ 25750060 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006837
GCATTTTCATTATAGACTAATCTTGttttaaaacttgtttttctctaaatatttaaacaatctTTTAATACTATTGTGTATGTGatattcattattagtattattatttgtagtattaatATTTTAGGCTACTGTTATTGTTTCACTCTTTCAACtttgaaagattaaatttttattgattaatcaacttatttaaaaaaaaacttgagatttCATCCTTTGGCTTTccttttgcaaatatatattttttaacaggaTTGTCTGTagcctattattttttattcactttattatcattgttcttatcactttattatttttttcctctgaataTAAAGACCATCCTTTGTGATATTTTGTCCATAATCATGTAGATCCTTTgctctattttatttcattttctccatATGTAGCTACAGGTGTTAGAGGATATACTGTTTATGATATTCAATATTACATTTTCTATAAGTCAACAtcctgttcaaaaaaaaaaaaagaattattattacAAGCATCCATATCCAAAGTATTCTTAAGTATATAAGATCTTAAATTCATCCTGCTCCAGAATATTCCATCATCCCACATTTCATTACAAGTGTTCTATCTCCACCCCCTCAAACTCATTGGTTTTCCCCAAGCCTTTAGTGGGATCCCTCTAATTCATTATTGTAAACCACACCACAGTCCTGATCAGCGTCGGTGACAGTGGCGCTCAAGCACACCGGAATTTCACAGCAGACATCATGGTCAGAATCAGCAACATGTTGGGATTTGTCTCTTTATGCATAGTATTGctgctggggtcagaggtctGCATAGCAGCAAGGCAAGAACTTATAGTTACCACCATAAAGCAAGACCCATACACGATGAGCAAGGGCTCTCAGTTAGAAGGCTACTGTATGGATCTGCTCACTGAGCTGGCTAAGAAGCTGGGTTTCAAATACAAAGTTCACCTAGTGAAGGATGGATCGTATGGCCGGCAGGATGAAAATGGAAACTGGAATGGAATGATCGGGGAGGTTGTCAGAGGGGAAGCTGATCTGGccgtagctccgctcactctcacTGCTGCCCGTGAGAAGGCTGTGGGAATGACAAAACCTTACATGCAGACCGGAATTAGCATCCTTCTCCGCAAAGATATTGTTTCTGAAGAGGCCGGCTTTTTCGACTTCCTCTCCCCCTTCTCTGGGGAGACCTGGTTCGGCATCCTGATTGCATACTTTGTGACTGCAGTCTGCATCTGCATTGTGGGAAGGTTGAGTCCATGTGAATGGAGTCAGCCGGAGACAGAGCCAAATCACTTCACTCTTCTGCACAGTTTGTGGTACACTGCAGGAGCCCTCAGCCTGCAAGGTGCAGGCCCTCACCCTAAAGCAGTGTCAGGAAGGGTCATCAGCTGTACTTGGTGGTTGTTTGCTGTGGTGCTCCTGGCCTGTTATTTCTCCAGCCTCAGCTCCACTCAGGGCTCAGACTCCGCACCGCTTATGATTAAAGGTTTCGAGGACTTGGCTAATCAGGATGTAATAGAATATGGAACACTTGCCGGCTCCTCCACCCTCGCCTTCTTCAAGAACTCTAACAACCCATCTTACCGACGCATCTACGAGCACATGGAACGAAGGAAGAGCTTTGTGTCCTCCATGGATGAAGGAGTCCAGAAAGCGAAGGAGGGAAATTATGCGTTCATTGGGGAATCGGTGTCCTTGGACTTGGCAGTGGCGCGGCATTGTGAGCTGGTCCGTGCACATGAGGTTATTGGGATGAGAGGATACAGCATCGTGACTCCGCTTGGATCTGCCATGCTGAAAAACCTGAGCGTGGCCATCCTGCAGCTGAGCGAGGCAGGGGAGCTGGCATACCTGCGTACCAAGTGGTGGGCCAGCAGCTGTTTACCAGATAATGCCAAAGCCTCGTCTCTGAGGGCCCACAGCATGAAAGGCATCTTCCTGGTGCTGGCTATAGGCCTTGGGATTGGAGTTTTGCTATCCTTGTTTGAACTCACCACAAAGTCTCGCAGCGCTGCAGGGGAACAGAAGAAATCCTGCTGCACAGTTTTGACTCAGGAGTTGAGTCAGCGTTTGAGAATGACCAACACAAAGAGAGACCAGGACACTTCAGACAAGAGCAAGCCATGAACGCTTCAACGACATCAGTGACACAGCAGAGTGACTTTACTGTACATTCAGAGGTgctagctattattattatatcccaAGTTagaaaatgatatatattttatacatattaacAGATTTAGATTTGATACTTAgtagattacattttttattacgtaagtttacatttaaaatggttACATTTAAATTAAGCTACATTCAATAAAGGCGCCTTTTCATTTTAATCTTGATTTGCATTAGATCATTATCATGCATTCCATGCTAAAACAGTATAGAGAAACAGAATTAAACATTTTGAGGccactattatgtttaaaatattaaatgctaAGATCTGTTTTGCTAATAAACGGTAAGGACTGGAGACATTGACCTTGAAAAGAGTTAAATTCGATTTTATGTTAGTTCTGTAAACCTGTGGAAATGTATTGCATGAAAATTGTCtataaaaagtcaaatatttcATGCAAATACAAATGACAAGTAACATGTTACGgttgttttgaatttaaacgtggggaaagatttacaaaaaaaatcacctCTTTGTCTTTGTCAAGAAAGAGCTATTATATCTGGCATCATGtatattaatcaattaataaacaTGCTCTAACACCA

Function

symbol description
si:dkey-183j2.10 Predicted to enable ionotropic glutamate receptor activity. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0015276 ligand-gated ion channel activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-729 Predicted to enable ionotropic glutamate receptor activity. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000070511

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006837 True 2765 mRNA 0.40 10 25735478 25750060

Neighbor

gene id symbol gene type direction distance location
XLOC_003485 mon1bb coding upstream 26167 25693395 ~ 25709311 (+)
XLOC_003484 otud5b coding upstream 45605 25681335 ~ 25689873 (+)
XLOC_003483 grm6b coding upstream 55757 25634041 ~ 25679721 (+)
XLOC_003482 comtb coding upstream 104036 25619892 ~ 25631442 (+)
XLOC_003481 ccdc120 coding upstream 116895 25583950 ~ 25618583 (+)
XLOC_003487 NA coding downstream 79310 25829370 ~ 25830337 (+)
XLOC_003488 CR318604.1 coding downstream 327887 26077947 ~ 26078061 (+)
XLOC_003489 NA coding downstream 438457 26188517 ~ 26196145 (+)
XLOC_003490 NA coding downstream 476022 26226082 ~ 26234069 (+)
XLOC_003491 ppcs coding downstream 613375 26363435 ~ 26369549 (+)
XLOC_003369 CR854846.2 misc upstream 9612396 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 13023482 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 13041215 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 13049879 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 13055450 12679732 ~ 12680028 (+)
XLOC_003467 NA non-coding upstream 469243 25256812 ~ 25266235 (+)
XLOC_003466 NA non-coding upstream 507283 25181857 ~ 25228195 (+)
XLOC_003463 NA non-coding upstream 675380 25059462 ~ 25060098 (+)
XLOC_003447 BX072564.1 non-coding upstream 1154364 24580579 ~ 24581114 (+)
XLOC_003444 AL831791.1 non-coding upstream 1556540 24178823 ~ 24178938 (+)
XLOC_003497 NA non-coding downstream 952897 26702957 ~ 26709080 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_03270390_03277409 NA coding CI01000306 null 3270390 ~ 3277556 (+)