XLOC_003496 (si:dkey-57n24.6)


Basic Information

Item Value
gene id XLOC_003496
gene name si:dkey-57n24.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 26669724 ~ 26683712 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006855
AAAGCATTCCTATAACAAAAGCTGACGTTACAAAGTTCTCCAAAGCTTTTAAGATCAGTTAAAACATAAAACACAGCGCTGAAGAGAAAATGCTGAAAAACTGCTGTCGGTTAAGCATTTCTAGATGAATTCAACATCGCCTGACATGGAGAGAATTGAAGATTTGCATTTAAACTCAGCACTGCATACAGAATATGAAGTCGAAGAACATAACAATTATGATCCATATGTTGAGATGCCAGAATACAGTTCTGGGGATGATCAATCATTTACAACAGACTCAAGCCACACTGTCAGCTGTACAGTCAGCATTGCATTAGCTATCTTTAAAGAGCATGAGGAGTGTTTtacagagaaaagaaaaaaagggacaAAGAACGAGACATCCAATGAGGTAGTAGAGGCCCCCAGAGCCGAGGGCTATTATTGCATTGAGTACAACATGCTGCCTGATGACCCTGAACCAACCAGAGTGGATCTAGTGATGTTTGGATCAGCAGCTAAGCTCTACATGGCCAGTGAGACTAAGGTGCTGAAACCTTGGCGAGAAGGAAACCAGGTCTGGGTGAGCTGGTCTCAGACTTTAAAACTCAAAGTGAGTAAAGAGCTCTTAATTAAGATGGCATCCCATAAGATCACAGTGAAAGTTTGGGACAGCAAAGAAAAGTTGTCCTTTAAAGCCAGGAATGACAGACCAAAAGCCTTCAGACTACCACAGGACAGGTCCGGAGAAGATCCAGACCAAATGGGTGGCATCAAGAAGGTGGTCTGTAAGATGCGAGCTATGAATGAGGAGAACCTGAGGACAAGAAAATCAGTCTCAGGAATCTCGCCCACTAAGAAGACCCTTTTCCCAGAGATCACAGAACACACAGAGGTCAATCTGGAAAAGGAGGCCGCCTCATTGGAACTCAGTTTTACTCCGCTTCTTGCAGGGAGTACGATGCTCACTGACTTCTTGGGATTCTGCTCTGGAGGAGTGAAAGAGGGATTCTGGAATGTCACTTTGGATCAGCAACTTATATCCGAGGAGTTAAAGGTTGAACTCAATCCACTAGTCATTAGAGTTTTATCAGCATGTTCTCTGCCCTCACCTCCGATTCAGTACAAGTTCGACAACATGCCAATTCACAGAAGCAAAGGCTACGATCATAGTGCTAATATTTGCTTCAGGGATGTGAATGTGATTTTTACTGGACTAATGAGCCATGGAAAGCTGGTTGAGTTTCTTAGAGGTCCACCAATAGAGATTGAAGTCCATGATCGGGATAGAAAGAATGAAAAACGCTTTACTAAACCAACTGTATTTGGGACAGATCCCAATGATGCCCGAATAGCTACCGTGGACCTGTGGACTACTGCTTTCAATCTAGACACTGAACATGATGATCATCCACATGGCATAGCAAAACTAGATCTTTCTGATCTCCTCCAAGGATGCAGATATTTGAAGCTGACCTTGCCTATTAAGTGTTCTGCCTCTAAGCACATTGAACAGAAAGTGATTAACTCAGATACCGCAATTCCAGTAGGTCATTATCTTGAAGCTAACGCCCAACTGAAAGTCCAGGTGGAGATAGCATATCCCCTCCATTCTGAAGATGAAAATGACTGTGAAGACTGTCCATTTGGTCGCATCATTTATGTCTTTAGGTACAATAATACTCCTATCTTATTCAAACTGACTTCTGAAATTCTGCAAATCAATGCAGAAGCCTTTCAGCTACATCATTATCCTGAAGAAACAATCCAAAGGGTCCTGTCAGGTCATATTATAAGCACCAAAGAAAGAGAAAACAAAAGGATGAATGTCCTCACTGGATTTCATCTGATGGATAAGGCTCTGCACCTTTTTGTTTTGGAAGGACTGAAGGATCAAGCAGTCAAAAGACTGTGGAGTGCAGTGCCTATGAAGTTGGATGGAGATGAGAAGGAACAGGTGACTGTGCTGTATAACTCAGACTTCGGGTTCTCAGAGCGATTGTATGACACACTTGATGTGGGTCTGAGCCCGATTTGCCTTTTCAAGCCACTTGAGACCATTATGAGGGAGCCTCTGGTGTTTATCAGAAATGCAGTTCCTCACGCCTGTCTTGAAGCCATGAAACgtATAAGCCACATTAGGCAGGCCAAAACACTTCAAGAAGCGGTGCACAACAATCTTTTCCCTTTAGCCAACATGGTTCTCAGTTTAAACAAGGAGTTTGGAGTGGATGTTGGGAGAAAGGAACTGTGGTTGGCTGCAGAGACCCAGGAATCTCAGGATATATCAGATCATCATAACATAAGGAAGAGAATGTACACACCTCTAGACAACTTCAACAGACAATATTTCCAGTGGAAACGAAACAAGTGTAAAAATGGGAAAAACTTCATTCAGgcAAACATTGAAGACGTCTACAGGGCTAGTAATGACTTAAAGAAGTCAAAATCTTATGTGGTTTTGGATACCATAACTGACAGTCAGACCATCAATTACCATAATAATGAAACAAATTCTACAATTCGGAGTGGAGAACAACTCTACAGGGAACTATCAAAGAACTCCACTGCTATTGGCATCTTTTGCCCAGGTTTTAGAAGCAGCATAGAGTCAAACCAGCACCCAAAGCGGCCAGACGATGCTCGGATAGAAGAGCTAAGAAAGCCTTGGACAGAAAACGTTCTTCATGGGAACAAACTAAAGCCAACGCTTTCCAGATCTAGGCTGCCTTGGATTCAGAGATATCAGGATTTTGAACTTTACTCCAAGCCTCCGTCACAGTTTGGACCAGTGCTTCCCCTGAGCATTCACTTGGCCGGAGAGTCTCTTTATGAGGAGCAGATTCAGGCTGCACGTGCTCAGCACAACAGATGGCTAAGGAAGATATTGCTTGGTGAAACTTCAACAGGAAGTGGAAGAGTTCCCGAGTTCAGATGTCACATGAGGAAAGCCAACCTGGATAAACTACAAGACATACTGAAGGACAAACCCATGAAATATTCTCTCAGGAGGCCAGGAATGGCTTTAAAGCCCATTCCCGTTATTTCTGTGGTCCAGCTTTCTGAAATGACTGGCTCAGCAGAGGAGGAGGCCAATATTCCATTTACTCCTGGACCCTTTCAGAACCACAGTCTGAGCTGGGACAAAAACGCCATTCCAAGATACTCATCCCAGTACAGCAAATTCCACTTTAGAGATTACTGGAGGCCTCATTCATTCCTGCACAAGCGAAGTGTGTTACCGTTTACAGATGAAGAGAAAAGAATACACTGCTACCAGAAATCTGCTGAAGCCCCAGAGACACCCTTTGTAACTGACTACTTCAAACTTAACAGAAACATCACAGAGATAAGAACCAACAAAGACGTCACCCTACATGTGCTATAAACGTATAGCTTAAAAATCACTTTGATT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000052912

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006855 True 3397 mRNA 0.43 16 26669724 26683712

Neighbor

gene id symbol gene type direction distance location
XLOC_003495 dynlrb1 coding upstream 54116 26604224 ~ 26615608 (+)
XLOC_003494 unm_sa1614 coding upstream 107378 26476153 ~ 26562346 (+)
XLOC_003493 fer1l4 coding upstream 202670 26403334 ~ 26467054 (+)
XLOC_003492 cpne1 coding upstream 268050 26375979 ~ 26401674 (+)
XLOC_003491 ppcs coding upstream 300175 26363435 ~ 26369549 (+)
XLOC_003497 NA coding downstream 19245 26702957 ~ 26709080 (+)
XLOC_003498 hdac11 coding downstream 449848 27133560 ~ 27197452 (+)
XLOC_003499 NA coding downstream 523484 27207196 ~ 27208386 (+)
XLOC_003500 fbln2 coding downstream 590643 27274355 ~ 27383732 (+)
XLOC_003501 NA coding downstream 720159 27403871 ~ 27414474 (+)
XLOC_003369 CR854846.2 misc upstream 10546642 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 13957728 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 13975461 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 13984125 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 13989696 12679732 ~ 12680028 (+)
XLOC_003490 NA non-coding upstream 435655 26226082 ~ 26234069 (+)
XLOC_003489 NA non-coding upstream 473579 26188517 ~ 26196145 (+)
XLOC_003488 CR318604.1 non-coding upstream 591663 26077947 ~ 26078061 (+)
XLOC_003487 NA non-coding upstream 839387 25829370 ~ 25830337 (+)
XLOC_003467 NA non-coding upstream 1403489 25256812 ~ 25266235 (+)
XLOC_003502 NA non-coding downstream 830148 27513860 ~ 27526561 (+)
XLOC_003503 CR548622.1 non-coding downstream 836744 27520456 ~ 27520573 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location