XLOC_003506


Basic Information

Item Value
gene id XLOC_003506
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 27729240 ~ 27731175 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008623
aacGATACCTTCAAGGATGCTAAAGGATGCTCAGGACCAAGTAAACTCCAGTGAAAGGCAGCCAAGTCTTCATCAGGCAGTATGTGCTACCTAAAAGTGAAGCAAAAATGACGAAACGATTTGGATTGAGATTAAGCTGCTTGGCAACTTCGTGCATCAGGTATTGGCTGGTGGTGAGGCTTTTGCCGTTGCGGCTGAGTTTGAGGGCATGGGCACTGAAGTAATATGGGATGTTGCACAGGGCGTAATCCGAATCATAGGCAACCAGACCATGGAAGCCGTTCTCTCGAAATAAGGCAATCACTTCCTGGTGATGATCCTCGATGGTCTGGACAACCTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008623 True 340 lncRNA 0.48 2 27729240 27731175

Neighbor

gene id symbol gene type direction distance location
XLOC_003505 CR931782.2 coding upstream 79581 27625076 ~ 27649659 (+)
XLOC_003504 barx1 coding upstream 183521 27543093 ~ 27545719 (+)
XLOC_003502 NA coding upstream 202679 27513860 ~ 27526561 (+)
XLOC_003503 CR548622.1 coding upstream 208667 27520456 ~ 27520573 (+)
XLOC_003501 NA coding upstream 314766 27403871 ~ 27414474 (+)
XLOC_003507 BX601648.2 coding downstream 7314 27738489 ~ 27744282 (+)
XLOC_003508 alpl coding downstream 237659 27968834 ~ 28010171 (+)
XLOC_003509 nmur3 coding downstream 376457 28107632 ~ 28126139 (+)
XLOC_003510 ephb2b coding downstream 434990 28166165 ~ 28424314 (+)
XLOC_003511 CR450786.1 coding downstream 711198 28442373 ~ 28447433 (+)
XLOC_003369 CR854846.2 misc upstream 11606158 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 15017244 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 15034977 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 15043641 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 15049212 12679732 ~ 12680028 (+)
XLOC_003499 NA non-coding upstream 520854 27207196 ~ 27208386 (+)
XLOC_003513 BX649345.2 non-coding downstream 786387 28517562 ~ 28520764 (+)
XLOC_003514 NA non-coding downstream 802049 28533224 ~ 28616959 (+)
XLOC_003517 NA non-coding downstream 906287 28637462 ~ 28643700 (+)

Expression


Co-expression Network