XLOC_035505 (CT025854.1)


Basic Information

Item Value
gene id XLOC_035505
gene name CT025854.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 13971417 ~ 14020139 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069649
cttttttttaaacaaaataaatgatggGTAATATTATATCTCTAGGCTAACTGAAGTATTGAAGCtccctttatgagtttccttatGAATGCAATCCAATATGGCGGAAATGGTTTTAACGTCAAATAAAACGCACATCAACTGTTGAGAGCAGTGGCTCAAACCAAGTCGACAAAGAAGGAAGACACGCTGTCTACACCAAACtgcagGAAGTCTTACCGGAGTCTGCAGCACAGATGCAGGGACATCACGCCGCACTTTCTTGGATTTGGCACAGTACAACTCCAAATGCTGGAGGTCACATCCACGCACACAACACTGGTCTACAATGCCTTTCCCACGAGAGCGAGGACCACCGCTACGAGCTGCTCCAGGTTTGCCTGATCATCAACAGACAAATTGAAGTTTTAATGTATAAGAATTAGATGCAACATTCATAGTCCCAATGTGGGATCTTGCTGGACGACAAATGATGCCATCTATTCttaaaaataattagattacatCAAATTACCATAAGTAAACAATAAAGGttaacaatttcaaaaacaga
>TCONS_00069650
cttttttttaaacaaaataaatgatggGTAATATTATATCTCTAGGCTAACTGAAGTATTGAAGCtccctttatgagtttccttatGAATGCAATCCAATATGGCGGAAATGGTTTTAACGTCAAATAAAACGCACATCAACTGTTGAGAGCAGTGGCTCAAACCAAGTCGACAAAGAAGGAAGACACGCTGTCTACACCAAACtgcagGAAGTCTTACCGGAGTCTGCAGCACAGATGCAGGGACATCACGCCGCACTTTCTTGGATTTGGCACAGTACAACTCCAAATGCTGGAGGTCACATCCACGCACACAACACTGGTCTACAATGCCTTTCCCACGAGAGCGAGGACCACCGCTACGAGCTGCTCCAGGCTGTTGTGAGATGCCAGAGGAGGTCTGGAGGATCTGCTGGAGGATTTTGGGCTGGCAATCAGTCTCTTCCATAGACAAGGCCTCGTGACTGGACTCCAGATCCAAAGGAGTTTCTAGTGGTGTGCTGCTCTGTGAC
>TCONS_00069651
cttttttttaaacaaaataaatgatggGTAATATTATATCTCTAGGCTAACTGAAGTATTGAAGCtccctttatgagtttccttatGAATGCAATCCAATATGGCGGAAATGGTTTTAACGTCAAATAAAACGCACATCAACTGTTGAGAGCAGTGGCTCAAACCAAGTCGACAAAGAAGGAAGACACGCTGTCTACACCAAACtgcagGAAGTCTTACCGGAGTCTGCAGCACAGATGCAGGGACATCACGCCGCACTTTCTTGGATTTGGCACAGTACAACTCCAAATGCTGGAGGTCACATCCACGCACACAACACTGGTCTACAATGCCTTTCCCACGAGAGCGAGGACCACCGCTACGAGCTGCTCCAGGAAGTCGTCGCCAGGATGGATGATGCCACACTTGGCAGCAATGGCACGTGCAGTGTTTATATTGTCACCCGTCACCATACGCACAGTGATGCCTGCTCGCTGGCACTTTCTGATGGCATCTGGGACCTGATTGGAAAATGACATTTAGCCAACCAAAACAGATAAGATATTATCACAAATATCTCTTGTATACAGCACAATAATATATGTGAAGTTTCTTCAACaccgtaaaacccaacagtcaactttatgaaatgaaatgagtgtagttaactcaaaattgactgaaagttaattctactcatttgaaaagagttttgaactttatgttgaaggtaataagttaattaaatacctcaataCTTTAACCT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097858

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069649 False 553 lncRNA 0.40 2 13971417 13980643
TCONS_00069650 False 511 lncRNA 0.47 3 13971417 13991941
TCONS_00069651 True 745 lncRNA 0.41 3 13971417 14020139

Neighbor

gene id symbol gene type direction distance location
XLOC_035504 doc2d coding upstream 15545 13849999 ~ 13955872 (+)
XLOC_035503 NA coding upstream 172048 13794981 ~ 13799369 (+)
XLOC_035501 lonrf1l coding upstream 183106 13700605 ~ 13788311 (+)
XLOC_035502 NA coding upstream 210502 13756013 ~ 13760915 (+)
XLOC_035500 pimr107 coding upstream 275405 13694950 ~ 13696012 (+)
XLOC_035507 ugt5e1 coding downstream 38507 14058646 ~ 14060244 (+)
XLOC_035508 tpk2 coding downstream 137882 14158021 ~ 14170576 (+)
XLOC_035509 NA coding downstream 221446 14241585 ~ 14246353 (+)
XLOC_035510 acbd6 coding downstream 361133 14381272 ~ 14441812 (+)
XLOC_035511 BX294388.1 coding downstream 395559 14415698 ~ 14415823 (+)
XLOC_035499 NA non-coding upstream 279411 13687104 ~ 13692006 (+)
XLOC_035498 NA non-coding upstream 373525 13518522 ~ 13597892 (+)
XLOC_035489 NA non-coding upstream 908279 12766030 ~ 13063138 (+)
XLOC_035512 NA non-coding downstream 538506 14558645 ~ 14561430 (+)
XLOC_035513 NA non-coding downstream 592847 14612986 ~ 14652650 (+)
XLOC_035515 CR450798.1 non-coding downstream 786035 14806174 ~ 14806290 (+)

Expression


Co-expression Network