XLOC_035506


Basic Information

Item Value
gene id XLOC_035506
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 14002077 ~ 14006807 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072163
ctttttgaATTCTCAGAAGCTCTAGAAATCAAAATTGTGAAACGGGAAATATCCTGGGACcattattgttttcttttgtttttacatCCCTCAACACGGTCTATAGACTACAGATCATCACCTTTGCATTATTAAGAAATCATCTTTCTTCCTGAATAGTGCAATATGAGGTGTTTTCAAAAAAGGGTGAACTCAACGTTCTTGCACCTTCACCCATGATTTCCAGCAAGCATTATAAGAGTTTCCTCCAATggttagatttattttatttatgctgcTGATATATGCTCTGTAATTTCATTTTCTTCTTTAAATTGGACATACACATCACACTCTAACACAGAAAACAGAGAGAGGGGCACGTGTGGAACCAATGAGAACATAGACACGGAATTTAacaacagcaaacaaacaaacaaacaaatacacatacatacagacttgcgtcatacatacaaacatacttaGTTATATAAAGCTAAACGATGAATAACTGGAGTATAGTAACTGTAGTATTAATCTTTGTAGTTTTCGCAGAAATAGAACCACTATAATAATTGGAACAATAatgttattaaagggatagttcacacaaatgcGGAAAATTGTGCCATGATTGACTCAACCCTCATATTCAAACCCTTATTGACTATTTGTTGAATACAAAAGGtaatagtttgaagaaagctggaaacctgtaaccattgacttcaatagtatttgtttttctaactacagaagtcaatggttacaggttttcagcattcttcaaaatatcttctttagtgtttaacagaagaaagaaaccaatAAGGTTTGGAATCAAGTAAACCAATCAAGGCCaagtaaacagtgagtacattttcatattttggctgaactatccctttaattaaaaGGCGAAAGGAGTTATCCCCAAATAAACATATgttcttctctttcttttttttttcatttgtacacTTTCGCTAGGCTCAGTCTTTAAAATCTTTAGTCAAGAGTCCACGCTTTAAGATACACGAAGATCCACCTCGTCGTTTTTGGGTGTCGTCTGTTCAAGTGCAACATACTGTATGAGAACAAAATTGGTCACTTTCATGCTGGATTGTCTTTGGGTCACACAAGATACTGTAAAGAACCACTGAAACATTTTGAAGCAGTGAATCTGTGATAGGAACAAAGAGTAGGTACAGAAACATCCTAAGCGCTTATTCTGTCCGTCTGGCAGGCAGGCAGTCTGACTTTGCTTCAGAGGCAGGTCTCCAGGCTGTGCAGGGGGCTGGCAGGAGTGTGTGGCGCCCCGCTGCCGTTCGTGCCCAGGTGGACTCTGCTTTCGACGGCGGCGTTGTTGTTGCAGTTGAGGGTGACCGGCAGACTCTGCTGCCTTAGTGGACGGGATGGATAGCGGGATCGAGGGGGCCTCTGGGGCGCCTGGGGTTGAGAGTGAGGGTGTCGGAGAGCCACGCGCACGTGGTTATGATTGGAGCGCTCAGATTCGTCGTCCACATCCGTCTCGTCGATCAGGGGGATGTTGTGGACCGAGTCCGTGATGATGAACTCCGGGTGCGCCTGGAAGTCGTGAATGGAGTTGCGCGACTCGGGCCGCTCGATGCCGTCGTACAGGGAGCTACGGAAAGCTTTCACCACCCGGATCTATACATCAGGGGTGCAGGGTAGGAGATGTCAAAGGGGGAAGAAAGATGGAGGGATCAAAAGGGACAGAGAGGTGGAGAGAAGTTTAGTCCCCCTTTTGCACTAGTTTTGGCACACTTTCAGCTAGCTGACCTGCGAGAGCTGAAAGCTTCACATCCATTAAGGCCTTGGGTGCAGGAGGCctttgaaaaacaaatacaaacaaaactCCACAGCCATTCTATAGGCCTCTATAGAATGACGCCCCAAAAATAATCCAAATCCAAGTTGTAATTACAATGAAAAGGTAACACAAGACGGCAAACACAAGTCTTTCCAATAACAGTGGTCTGTCAAAGCAGCCTTAGCCCCCTGTCTGCTTTTGATTTAATTGCATATTTGTGATAGCGGCGTTTGGTTTTCTTCTTTAATGAACATAAAGGCGTCAATTtagtaagcaaaaaaaaaaagacaaataaataaaatagtgtatGCTCGCAACGGAATTACAACTTTCACTGTTGCCAGTTCAATACCAAGTGATttaaaagtcatggaaaacactCTAAGAAAAACTCAACagacaaacacatgcaaacaaatgACAGTAAACACCAGAAAAAAATGAGTGAAGGCACACTCCACCATGTGGTacgaacacatacacacagtgtacacagtacacacacagaaaacaaaacaaaagtgagGTTGACAGAACACGGCTGTGCACAGAATGCACAAACACGAAAACACACAGGAAATTAAGACATGCGGATTCACATACTGTTGCTGTCGACAAAGTCTGTAATACAGATTCAACTTGAAAAAAAGTCTTGAAAGAACAGATTGCATTAGTGACTGCAAGCAGTATTTATTGTTCTGACATCAGTTTTCTATGTTACATTTATAGGGTTCTGTATCTCGGTAAGCTTTGTATTAaatcaatgaaaaaaagaaagcaaagtGTCTTGGATTATATTAGCTCACTCTAATATGAGGACATTTAGAAGATCATGACTGCCTCTTTTTGGAGATAATGAAAAACTAAAACTCTCTATGCCCTCAAAAGGATATGCACACATTAAATGGGACTTTTCTCCCATGCAACCATGCACAAAAATTCAAGTTTCCTCTTCCCGTTCATGCATGGCATGCAAGTACACATTCAGTAGAAATAACTCTGTATAAACATCGATCAAATCGGTCCATATTCCTTTTTTTTCTGACATCCTCGTTCTCATCACGTGTGATTCTACAGCAGCCAGGGTGAAATGCATCTTCTTGAAAAGAAACCGTTCGTGTGTGTGACCATGCATGTCCACATTCATCTGTGCCTTTCTTTTTTCGTCCCCCGTTCTCCACATACTGCATGCATAGCCAAACCACGCTCAGGAATGACCACAAAGCAATGTGACTGACAGAGGGAAAGACTACACAACATGGACACAACAGCGCTCCTGCGGCTTTGTTTTTCCAAAGAGCCATTCGTTTAGTGGTTCCTGCTTAATTTAAAAGCCGTTTTCTTAGCTATACACAGCACTGACATTGTAAACTTTCGAGTATAAGGCCCAGAATTCACGATGGGGATGATATTGAACAGGAAAAAAAACCCCGTTATGAATTAACTCCAGTGAAGAAATCAGAAAGTCTTTCGAGATTCAGGCACTGGATGGAAAAACAGAAAAGGGATTGTGTTTGAATAGCTCCAAACACATCACATCGGGACTCCTCAAGACAGACGGCAGGAGAAGGCAGGTGAAAGACAGacgtttgatggatggatggaggtcTAAATCTACAGCACACTTTCTTTTGTTGAGGCATGACGGCCTAACAAAAGCTTTTGAGAAGCAGCCCTCTTGTGCAGCATCAGcaactttgtttcttttttattttggtaaaactattactataaaaatatagttatttaaTGCAGTCATTTAACTGGATCTTCCTATCTCTGTCGGATTTAAGCTAGCATAGCACAAAATGCTATACGACGATGAAACGAAGACAAACGTGAAAAGAAAAACTGGACAAAACTGACAGGACAAGACGAGACAAAAACCCATTGGATTAAAAAAAGGGACAAAATATAAAGCCGTACTTTCGTCGAATGTTCGTAAATAAAAGGAACTGAAGATTAACACTGAAGGGGAAGTGATGATGAAACTGAGGGGGTTCCAGCTGGGCTAATGCTCGGTGGTCTCTTTGAAGGGATTTGGAAATGCTAAGACGCAGCTGCTTTCTTTCGACCACAGAAAAGATCGCTTCTGGAACCTGGAGGGCAACGTTGACGTTATATTTGGTGCATTAAACCCTCATAAACAAATctcttgactttcaagaagaccAAAGCTACAGACAGTAAATCATAGCAGCAGATTTCTAATGTATAGAAACTCAAGCAGAAACAATTAGCAGGACATTTCAGTAAAACCTGTGAAGAGAAAGAGGAGAGTCTGAACAAGGTGCACAAAAACAGTTCAAGCAAACACACAAGTATGCTTTATGTTTTCCTGAACGGGATAGAAAAACGTTAGCACTATCAATGCTAATATATCCCTACTATGAAAACCATTATGGGCTTATACTCGCAGGTTTACAACAGTCAACATTGGCTTCGGTTGTTCCCATGTTGTCAGCTTTTGATTTAGATGAAACAATTTCCCAATTGTTATTTGGCTCTTTCGAGAGAAATTCTGGTAGCCCTTTATGGCAACATTGATTTGAGGATGAATTACTGGCAAATCAAGCAACAGTGGAGGGAGGGGGggggatttaaacaaacaaacaaaaaaaggcaagaagaaaaagaaaattccaTCTTGGCAGCACTAACCAAGAATAAACAGCGAGAGCAAGAAATAAGTTATGAGGTAgcaaggaaggaagaaagaaagatagaaaggccacaaataaataagcaaaacaaactgaaaatgcACATGTAGAGAGATGAGGCAGATGCTTCCGTTAAAAtctgctctctctcacacacacacacacacacactcaacattcAGCAGACGAGTTGCGTTTGAAGGCAGGCaacaatgcatgtgtgtgttggtgtATATGCTAGGCATCTGAGTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072163 True 4731 lncRNA 0.41 1 14002077 14006807

Neighbor

gene id symbol gene type direction distance location
XLOC_035504 doc2d coding upstream 46205 13849999 ~ 13955872 (+)
XLOC_035503 NA coding upstream 202708 13794981 ~ 13799369 (+)
XLOC_035501 lonrf1l coding upstream 213766 13700605 ~ 13788311 (+)
XLOC_035502 NA coding upstream 241162 13756013 ~ 13760915 (+)
XLOC_035500 pimr107 coding upstream 306065 13694950 ~ 13696012 (+)
XLOC_035507 ugt5e1 coding downstream 51839 14058646 ~ 14060244 (+)
XLOC_035508 tpk2 coding downstream 151214 14158021 ~ 14170576 (+)
XLOC_035509 NA coding downstream 234778 14241585 ~ 14246353 (+)
XLOC_035510 acbd6 coding downstream 374465 14381272 ~ 14441812 (+)
XLOC_035511 BX294388.1 coding downstream 408891 14415698 ~ 14415823 (+)
XLOC_035499 NA non-coding upstream 310071 13687104 ~ 13692006 (+)
XLOC_035498 NA non-coding upstream 404185 13518522 ~ 13597892 (+)
XLOC_035489 NA non-coding upstream 938939 12766030 ~ 13063138 (+)
XLOC_035512 NA non-coding downstream 551838 14558645 ~ 14561430 (+)
XLOC_035513 NA non-coding downstream 606179 14612986 ~ 14652650 (+)
XLOC_035515 CR450798.1 non-coding downstream 799367 14806174 ~ 14806290 (+)

Expression


Co-expression Network