XLOC_035509


Basic Information

Item Value
gene id XLOC_035509
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 14241585 ~ 14246353 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072164
aaaaggatgACACAAAATGAAGGTTTTAAAAATAAGCGTGGTTTATAAAACCCAAATATGACAGGATCACCAAAGTGTATACAGAAACACAAATGAGATCATCAGTGGAACCATCATAGGAATACACTTAACATTTACAAACTACTCTGCAAAAGGGGGAACTCTCTGTTCAGGTCTTCATTTAAGCACAGAAccacaagttgttgttttttctctatttttcattaagtcttaactTACTCAAAAATACAACCATCTACCAACTACAAACAATGTCACAGTCAAGTATTTAAGAAGAGTTACAACATCAAGACAGGAGATAGAAAAGATGCAGAGATATCAAGCACTTAACATCATGGGTTTAGCAAGCAATCAAGTCAACGTAGTTTTACCCCCATGAAGAAATGACGTCAGGGCTTGTGTATTATTCCAGTTCTGTATTTGaaaatgtaacataaaaacaatgtacaaaataaaaaccCTACACTTTTGAGGGCTCATCTCTTAAAAGCACCCCTAGTTGGGCTGTTAATGAGAATGTTAACGTCCCAGTCGTCTCCTAATCCTCAAAGCATCCACTCAAAACCACCGTCACCCGCCGATTCCTGTCAGATGGGCACAAACCCTGGGGATGAAAGTGTTCACGAGTAGAAATATACACCTAGATAAAACCGATCACATTCCATATTCACTAAAGCATCTTATTAAGTTACACTATTTTCACATGTAAGACAGTGCGggattgtgactagtcaaaaatgCCCTTCATCTACCATAATACTGCTCATTTAAAGTAATTGACATAAATAATTAGTACAATAAATTAACCGGCAttcttttacacatttaaaatgtaaaaaaaggaaCTATTTACAGTGCAAAACAAAAGCAGCATGCAGGCAAGACCGTTGGCAATGCATTACAAATAGCACTAGATGGGGCAAATTTGTGCTCAGCACCCGTATACGGTGATATTGATTCAGTActatggataaaaaaaaacagtgtatcatttttacaatttgtttGTGTGCCACTTGATAAAGATTCAGTCAGTTCTGAGAGTTAAGAACTAAAGACAGAGCGAAGTAAGACACAATGTGCCGAAAGGTCACAACAAGATTgacatttcattaatattaaaggACAAAAAGGACCATACAGTAACAGTAACACCACTATCTCCATTAAGGATATTAATTTGCCACCACAAATCACGTGTTGTTTTTTGCCACCTTTGGTGTTTGATTTGTAACTCAAAATCTGAAAAATCGAGCTTAAAGTGTTACCCACAAACACATTtagtttttgtcattattttccaCAAAGCATgatcacttttaaaaaataaataaaaagcaaagcagAATTTCAAACGGAGAAAGTGTAAAGATTCAATTTTAGTTTCCGCTGTAAGATTGTGCTTTGCAAAAATACACCGACGCATGCTATTAAAATCAACTAAAGGCTTAAAAAAGTAAGCAAAACGCACTTATCAGCAAAAAACAGCCCTGGTGTTTTGTTTCTGTGATGATAACAGTGgatattaatcataataaaagtCACTACAGGTTAAAATGACACTGTTCACTCTCCTCTAATTATGATAATCACTCTTTTCTCAAAGACCACTTATGAAAATGTATGAAAGACAAGGTAGTTTATACCTGCCTTGCAAAAATGTGCATTATAAATCATGTACAAACACATCGGTTTTCATCAAAATGTAAAACCAATTATCAGCAAAGACATTCCCACACTCATCAAGCATACAAATAATTCAGTTGTGACCATAGTAAAGGTAGAAGAGATCTCCTCACTGCATGTGAGCTACAGTAGTTTTTGATGCACAAAATCAGTTACGGTTCACCACAATACAAAATTGATAAGAGTTACTGTATAATCGACTGGCAGTGTTTGCATTTCCTCTTTGGCTTGCTGTGATAATGATAAAGTGATAGAAAAAGCCGTGTAGGAAATactttagtttaataaaaatgtgttcaGCTGGGTGACTTTACTTAAGTGCATCACTACAGATGAAAACGTTCGCAGAATCTTTTTCAGAAGCCAGTATTTCTTTTacccaattgttttttttttaaaatgttaaccaTTCGACAGGTTTTCTTACAGAAGTTGTCACATTTTTGAAAACATCTATTCTCTACATCCTGAGAGGACAGCAGAAGTTTAATACCTGCTGTCGCTCctcagcagaaacacacacacactccattctCTCAAACACAAACCATACATGGCCAAAATATATGACAGCTTTGAAATCAAAGCAACGcatgttaaaacataaaaaataaaatatatttgcatattaaatatgatgaaatgataaaatatggTGTTATTTCTGTCGAGCATTTCCTAAAAGTGCCACCAGGGCCGCAGTCTGATGTCAAAACAAATCAAAGGAAAGATCCTGATCTGTAAATGCGCTGTGGTTAAAGTGTGCAGTGTTGGATATTATGTTCCTCTTTCATATGATAACTCTCCTCCCTGTAGATCCTAGTTATTGTTTTAAGTTTGTAAACAGTCGTACGCAGTAATATAGATTCAAAAAGCTaaacaaatgtacaaaaaagtATCAATACAGAAGAAGAAAATGAAAAAGTCTAATAAAAAAAGTATCTTGTGGAAAACCCCACACTTGGCttttccgtgtgtgtgtgtgtttgtttgtacgaTGTCTCTGTTGTGTCTTGATATGTCTCAcggctgtttttgtgcttaacTCTGTCCACTACTCTGTCTTTgggtgtgtttgtgagtgtgtgtgtgtgtgtgtttgggatcaGGTGTGCTGAGGCAGCTCTGTGAGGAACCAACAGAAAGCAGAGACTGGTGGTGGGACAGTGAGATCAGATCTGGGTTCAGCTGAAGGCCTCATCATCCGTATCCTCAATCAGCACCTTAGTGTCCTTCTTGGACCTAATGGTTTCTTACTGAGAGGACAGCAGAGGTCGACG

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0021546 rhombomere development biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0021593 rhombomere morphogenesis biological_process
GO:0021594 rhombomere formation biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0048869 cellular developmental process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007420 brain development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072164 True 2987 lncRNA 0.36 2 14241585 14246353

Neighbor

gene id symbol gene type direction distance location
XLOC_035508 tpk2 coding upstream 71009 14158021 ~ 14170576 (+)
XLOC_035507 ugt5e1 coding upstream 181341 14058646 ~ 14060244 (+)
XLOC_035505 CT025854.1 coding upstream 221446 13971417 ~ 14020139 (+)
XLOC_035506 NA coding upstream 234778 14002077 ~ 14006807 (+)
XLOC_035504 doc2d coding upstream 285713 13849999 ~ 13955872 (+)
XLOC_035510 acbd6 coding downstream 134919 14381272 ~ 14441812 (+)
XLOC_035511 BX294388.1 coding downstream 169345 14415698 ~ 14415823 (+)
XLOC_035512 NA coding downstream 312292 14558645 ~ 14561430 (+)
XLOC_035513 NA coding downstream 366633 14612986 ~ 14652650 (+)
XLOC_035514 cacna1ea coding downstream 464189 14710542 ~ 14828450 (+)
XLOC_035503 NA non-coding upstream 442216 13794981 ~ 13799369 (+)
XLOC_035502 NA non-coding upstream 480670 13756013 ~ 13760915 (+)
XLOC_035499 NA non-coding upstream 549579 13687104 ~ 13692006 (+)
XLOC_035515 CR450798.1 non-coding downstream 559821 14806174 ~ 14806290 (+)
XLOC_035525 BX510319.1 non-coding downstream 1230272 15476625 ~ 15479807 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G114414 NA non-coding NC_048566.1 CM023220.2 12669799 ~ 12670503 (-)
rainbow trout (Oncorhynchus mykiss) G433735 NA non-coding NC_048569.1 CM023223.2 69656009 ~ 69703291 (-)
eurasian perch (Perca fluviatilis) G97295 NA non-coding NC_053120.1 CM020917.1 22156111 ~ 22157958 (+)
bowfin (Amia calva) G143237 NA non-coding CM030140.1 CM030140.1 3581082 ~ 3588105 (+)
mexican tetra (Astyanax mexicanus) G59960 NA non-coding NC_035902.1 CM008305.1 49544649 ~ 49546981 (+)