XLOC_003551 (CR855274.2)


Basic Information

Item Value
gene id XLOC_003551
gene name CR855274.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 31047854 ~ 31055288 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006953
ttttttttttacatgtaatgtTCTTAAACTTTTGTTACAatgtatatttatagtttatatataaaatataaatatataaaggccTGGATAAATTATGTATTTCATAAAATGATTGTTTATGGACTAagcaaacgttcgaggttactaaagtaacccttcAGGTTGAGATGATCAAGAGCCACGGTATCCAGAAACCACCAAATGAAAAAGatgaaccacatccaacaggaggAACTGTGGATGCCAGAGGAATCTGTCTGAAATGGATGTCTTTGTGTAGTGAACAAGCATGAATAACATGCAGGTTTTGGAGTATTCATGTGGAATTCCTAGCTTCAGCTTACATGTTTTTCATGTTTGTTACCCATTTATTAATACGATTTaccattaacaaagcatttgttGGTGTAATTAATAACCTTATTGTAGCACTCAGCATTATCTAATGttacatttgttcattaatgGTTCTTGTAAGCAAGGTGttaactaatttattaattaacactGTAACAGACGTTAATAAGAGTTATCTTACATTTCTTCATGTTTAAGGATCActttatttctattgtttatgggggacttttattttgacaagaaaTCGTTTTTTCAGAGCTAAAAAGTTATGATGAGAGAACAGTATGGATAGCGGGCATTTCATGACGGTTTAACAGAGCTCGTGTTAAAAAGGACGGTTTGTAAGTTTATTCCTCGCTGCCAGATATGTTGAGCTTCTTTAAAGGAAGTGCAGCAGATGACGCAGGCTCAACGTAGCCATTGTGTAACGAAACGATTGAGCGCTTCACCACATTAATATTCACGAGAAGTATTACGAGCTGTTACGACAGACACAATCATCGTGACAACACAGCTACgttttacttgaattattcat

Function

GO:

id name namespace
GO:0006691 leukotriene metabolic process biological_process
GO:0019370 leukotriene biosynthetic process biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000100787

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006953 True 898 lncRNA 0.34 2 31047854 31055288

Neighbor

gene id symbol gene type direction distance location
XLOC_003549 cacna1ab coding upstream 21519 30817943 ~ 31026335 (+)
XLOC_003550 CR855274.1 coding upstream 72962 30974771 ~ 30974892 (+)
XLOC_003548 wdr83os coding upstream 300018 30744266 ~ 30747836 (+)
XLOC_003547 slc22a7a coding upstream 304888 30729745 ~ 30742966 (+)
XLOC_003546 ttbk1a coding upstream 319613 30663300 ~ 30728241 (+)
XLOC_003552 stx10 coding downstream 66052 31121340 ~ 31133573 (+)
XLOC_003553 stx10 coding downstream 134867 31190155 ~ 31202851 (+)
XLOC_003554 NA coding downstream 149698 31204986 ~ 31212769 (+)
XLOC_003555 NA coding downstream 150195 31205483 ~ 31209887 (+)
XLOC_003556 trmt1 coding downstream 180713 31236001 ~ 31258356 (+)
XLOC_003369 CR854846.2 misc upstream 14924772 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 18335858 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 18353591 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 18362255 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 18367826 12679732 ~ 12680028 (+)
XLOC_003541 NA non-coding upstream 747800 30298703 ~ 30300054 (+)
XLOC_003537 NA non-coding upstream 794297 30252940 ~ 30253557 (+)
XLOC_003534 NA non-coding upstream 943894 30091155 ~ 30103960 (+)
XLOC_003530 NA non-coding upstream 1141025 29905248 ~ 29906829 (+)
XLOC_003557 NA non-coding downstream 229696 31284984 ~ 31320539 (+)
XLOC_003561 NA non-coding downstream 569883 31625171 ~ 31671413 (+)
XLOC_003563 AL844172.1 non-coding downstream 784780 31840068 ~ 31840189 (+)

Expression


Co-expression Network