XLOC_036039


Basic Information

Item Value
gene id XLOC_036039
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 51581729 ~ 51586703 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072294
cacacacacacacacacacacacacacacacacacacacacacacacacacacacatatatatatatatatatatacatacacacacacatacacagagtataaaaaaaaacagacaacaaCCTTGATTCTAACAGTCTATTTATGGAAACACATCCGTAATAGAGTGCAACAGAGTTTGGCGAAGAGAGAACGAGTAGATCGTCCCTCCACCATTTACATAAATACAGCctgatacataaataaatagctCGCGCCCCTTAAACAAGGGTCCGATATACATAGAGAATCACACTTAAAGTGCAAAAGTCTATTTTGATTGCCTTCATTGAACAGGATTGACAGAGTACCTACAATAACATATGTAAATGAAAGAACACAACAACAGCATATCGTATaataacaaacaaacgaacaaaacaaACTCGAGATGGCTTTCATTTTCTTTAAACCACGCAGCAAATAATCCAGGTCAGCTGATATATTAATGCAATATCGGAGCAGCACTAAAACCTAAGCTGTATTTTATCTGCTACTTTCTTTGAGATTTATCATCACAAAACTTAAGGATGTAAATGCACACTGTCAAAATTGATtagtttactttacttttaaaaattgtgAGTGAACATGTTGCCCTAAAATGATTAAGTATCATAaaatttaagttgagtcaacttaaaggggacctattaagcctctttttacaagatctaaaataagtctcCAATGTTCCTATAGTGTAAGTATTGCcaactattttaaattaaaaggtGCTAAGCTCTGCCCGAAAAGTGATTAAATATCACAAGATTATGTCATACatcaatttacgaattggatttgcacatttatgaattgtattttttaatttctgaattggatttgtgtatttatgaattgcgtttttaatttatgaattttttttgcgTATTTctgaattatgttttatttaacgaattggatttgcgtatttataaATTGCGGCTTGAATTTACAAATAAGTTTTGTCCATTAACGAATTGCATCTTCAATTTATGAATTGGCTTTGCGCATTTAAAAACTGcgtcttgaatttacaaattagatttgtgcatttataaattgagtcttgaatttacgaattagatttgcgcATTTCCGAATTGTGTCTTCAattgacgaattggatttgcgcatttataaattgtgtcttgaatttacgaattggatttgcgcatttgcGAATTGTGTCTTCAActgacgaattggatttgcgcatttatgaattgtgttgttgAATTTACGAAtaaaattttgtaaatgtgaattgtgaatgtattattttttagactGATCTTGTTCCATAGAAAAGCCGACGGCATCATCCACAGCTCGGTACAACGGTACAGTGTGGACCATATGAGTGTCTATAAAAATCTTCagtaacaccaaaaaaaaaaaaaaaagtcacaagaTTTGTTGCTAGTcaattttttgaaaatgtgtcaATAAGAGGGTCAGACAAAGTCACAAAGTTGGCAACACTGTATAGTGTATGTGAAATTTCAGCTCATTATACCCCACAGATCATGTTttgtaactctttgaaactgccccttttaggctttgatactAATagtggcattttggtgactgtcgctttaaattcaaatgagattgtgctcttttcaaaagagggctgagctacaaatgcctgtgtcagcatagtggcagattcaaaaacaagactaatgctctgctaataagggagagatggtcactaatgcgtgggggctttccccctctgatgacacgtacaataAGGGAGAATGCCAGTTAAAGTGTGTCTGCAGATTGTTTTTCTCaagtgtaattataaaaaataaaatttatatttttttaccattagaagctggctatattcacactcTTACCACAGAACTGTGTTTAAACttcatataaaagtgatttttgcataataggtccactttaaaTGCTCTAAAATACAACAGGTTTGTTCAATTTTTCTAAGTAAAGTCTACTTGTcgctattttaaaataaagtaaataattgcGTTTTACAGTGCACAAAGTGATGCTCTAATTTAGTGcttcaacaaaaaacaaaccagaCAGGATTGATAAACAAACATACCATAAATATCAGGAAGAACTAGATTTGACATTATGACACAAGAATCATCACATGAAAATATTTGGTGTGGGTTGGTCATTTCAGCAATTCACctccacaataaaacaaataatagggAAAATCAGAAATCTGAAGTGTCATATTTACATGTATAATATAGTGATGATATAAACCAGCATACTGGCACCACTGGTTAATCAATGTGCATATTAACCTATGGCTATAAGTGTTATTACATAGAATTAGAACAGAACGCAGCAAAATGTGTTTTGAAGTCAAAATAACCTAAACATGATTATGTTGAATGGGAGGTAGATCAAACAACACATGGAAAACTggaaagcaaaacatttttagacatacaaaatatgaaaacgGAATATCTGAGACTTATACAGTTAAAAGCAAAGATATGAGCCCTCctgttttcataattttttaatatttcccaagtgatgtttaacagagcaattcaaattgtcacagtattttatataatattatatcttcagcagaaattcctatttcttttagtttgcctgaaataatagttttaatataaaaaaaaatattttaaaaatcttattagccccttaaaattattgtatatattttttgattgtctaaatgttactttaagcagAATAATAGTatctttataataattttattattaataattttataaataatttttatttataataaatttattattattagaaattagttatcaaaactatcctgtttcaaaatatgttttctctgttaacagcacttggaaaatataaaaaaaatatataaaaaaaaatttaacacacACAGGGCAAATAATTTAGCCTTCAACTGTGTATTAAATGTACATTGCATATCTGAAACTAGAACCGTCAGTTTCACGAGATGTTTAAGATATTTTCCATTATTACTTAAAGCTACTATGAGTTTACTTTGCCTGGAGTAAGCTGTGCAACATTAAGCCTTATCAAAACTTGCCTAAAATTCATCGTCAGCTCTAAAATTCTACAGATATATTTGGTTGCATTGattgacagaaatgttgacttCATTTTTTAAGACAAAACACAACCTGAAATGTGTACATTCGGTAAAAGTGAACAATTGTTCAactcaaagcataaataaaagagttttttttttttacatatttggaattTCTACATCAAGCTTTCGCTGTTTTGGCCACAATTACAGACCCTGGATGTGCACTAGTGCATGAGAGCACTGCAAAAATTGCTTTACTTACTTAAGGTTTttctcttgtttctagttcaaatatctaaacattcttaaattaagatgcattttctagacaagtttttgttttcagaaattattTGTGATGGGAATAAtggttttataaataaacaatgttactAACGGAATTGCTTCTTTCAGTAACGagtaatcaaataaattacaGTTTCCGTTGTTACAACGCTATTACCATCACTAACCATTATATGCTGTGTTATATAATTGATATTTCATTTACAATTGGGCTCACTGACAAGGTTTTCATCCACAGAGGTTGGACAACCACATAACTCATGATGATTGGGGATTGTGCCTAgtggtgggacaaccacataactgatgatgattggtgaGTGTGTGTAagggtgggacaaccacataactgataaTGATTGTAGAGTGTGTGTTTAAGGCTAGGACAACCATATAACCGATGATGATTGgtgagtgtgtgtaagagtgggacaaccacataactgatgatgatgattgggTAGTGTGTGTAGgagtgggacaaccacataactgatgatgatcaGGCATTGTGTGTAGGGGCGGAACAACAACtgatgatgattggggAGTGTGTGTAGAGacgggacaaccacataactgatgaataTTAGGGTGTGTGTGTAGGGGCGGGATAACCAGATAACTGGTGATGATCGGGGACTgcgtgtaggggtgggacaaccacataactgataaTGATTGGAGATTGTGTGTTgggtaataatattataataaaatagaatagaatggtgtacaatgttttatttataataatttatttattttagtgtccaatttattaaacatacagcggtcactttttggacatttttaaaaattaacgcAATAGTTACTTTCGCTGGTAATTAGTTAGTTTTATAATGATGTAATCCAGTTACTAACtttttttacttactttttatgagaagtaactagtaactataacaaatgttttaccttaaatcaagcaaaataaactGCCAATGGCATAAGCAAAACAATTTTGGTTTCAGTTTGAAATAAGAACATTTTATTTACCCTAATGGAAGATTATTTAGCtagttttaacaaaaaaaaactcagataATTCTGACTTACtgattctgaaaacaaaacaatattttgaatttgtgtAGAAAGTGCTTCTTGACTgaagaatttttagatatctgGCCCGAAAACTGGACAAAAATCCTAAGCAAGTagaatttcttttagttttttttttttgcagtgagtaAAGCTCAAAGAGGGCTGGCAAAACAAGTGCTAGTATTGCATAAGTTTTCACAGGAGCGTGAAAAGGATTGTGGGT
>TCONS_00072293
cacacacacacacacacacacacacacacacacacacacacacacacacacacacatatatatatatatatatatacatacacacacacatacacagagtataaaaaaaaacagacaacaaCCTTGATTCTAACAGTCTATTTATGGAAACACATCCGTAATAGAGTGCAACAGAGTTTGGCGAAGAGAGAACGAGTAGATCGTCCCTCCACCATTTACATAAATACAGCctgatacataaataaatagctCGCGCCCCTTAAACAAGGGTCCGATATACATAGAGAATCACACTTAAAGTGCAAAAGTCTATTTTGATTGCCTTCATTGAACAGGATTGACAGAGTACCTACAATAACATATGTAAATGAAAGAACACAACAACAGCATATCGTATaataacaaacaaacgaacaaaacaaACTCGAGATGGCTTTCATTTTCTTTAAACCACGCAGCAAATAATCCAGGTCAGCTGATATATTAATGCAATATCGGAGCAGCACTAAAACCTAAGCTGTATTTTATCTGCTACTTTCTTTGAGATTTATCATCACAAAACTTAAGGATGTAAATGCACACTGTCAAAATTGATtagtttactttacttttaaaaattgtgAGTGAACATGTTGCCCTAAAATGATTAAGTATCATAaaatttaagttgagtcaacttaaaggggacctattaagcctctttttacaagatctaaaataagtctcCAATGTTCCTATAGTGTAAGTATTGCcaactattttaaattaaaaggtGCTAAGCTCTGCCCGAAAAGTGATTAAATATCACAAGATTATGTCATACatcaatttacgaattggatttgcacatttatgaattgtattttttaatttctgaattggatttgtgtatttatgaattgcgtttttaatttatgaattttttttgcgTATTTctgaattatgttttatttaacgaattggatttgcgtatttataaATTGCGGCTTGAATTTACAAATAAGTTTTGTCCATTAACGAATTGCATCTTCAATTTATGAATTGGCTTTGCGCATTTAAAAACTGcgtcttgaatttacaaattagatttgtgcatttataaattgagtcttgaatttacgaattagatttgcgcATTTCCGAATTGTGTCTTCAattgacgaattggatttgcgcatttataaattgtgtcttgaatttacgaattggatttgcgcatttgcGAATTGTGTCTTCAActgacgaattggatttgcgcatttatgaattgtgttgttgAATTTACGAAtaaaattttgtaaatgtgaattgtgaatgtattattttttagactGATCTTGTTCCATAGAAAAGCCGACGGCATCATCCACAGCTCGGTACAACGGTACAGTGTGGACCATATGAGTGTCTATAAAAATCTTCagtaacaccaaaaaaaaaaaaaaaagtcacaagaTTTGTTGCTAGTcaattttttgaaaatgtgtcaATAAGAGGGTCAGACAAAGTCACAAAGTTGGCAACACTGTATAGTGTATGTGAAATTTCAGCTCATTATACCCCACAGATCATGTTttgtaactctttgaaactgccccttttaggctttgatactAATagtggcattttggtgactgtcgctttaaattcaaatgagattgtgctcttttcaaaagagggctgagctacaaatgcctgtgtcagcatagtggcagattcaaaaacaagactaatgctctgctaataagggagagatggtcactaatgcgtgggggctttccccctctgatgacacgtacaataAGGGAGAATGCCAGTTAAAGTGTGTCTGCAGATTGTTTTTCTCaagtgtaattataaaaaataaaatttatatttttttaccattagaagctggctatattcacactcTTACCACAGAACTGTGTTTAAACttcatataaaagtgatttttgcataataggtccactttaaaTGCTCTAAAATACAACAGGTTTGTTCAATTTTTCTAAGTAAAGTCTACTTGTcgctattttaaaataaagtaaataattgcGTTTTACAGTGCACAAAGTGATGCTCTAATTTAGTGcttcaacaaaaaacaaaccagaCAGGATTGATAAACAAACATACCATAAATATCAGGAAGAACTAGATTTGACATTATGACACAAGAATCATCACATGAAAATATTTGGTGTGGGTTGGTCATTTCAGCAATTCACctccacaataaaacaaataatagggAAAATCAGAAATCTGAAGTGTCATATTTACATGTATAATATAGTGATGATATAAACCAGCATACTGGCACCACTGGTTAATCAATGTGCATATTAACCTATGGCTATAAGTGTTATTACATAGAATTAGAACAGAACGCAGCAAAATGTGTTTTGAAGTCAAAATAACCTAAACATGATTATGTTGAATGGGAGGTAGATCAAACAACACATGGAAAACTggaaagcaaaacatttttagacatacaaaatatgaaaacgGAATATCTGAGACTTATACAGTTAAAAGCAAAGATATGAGCCCTCctgttttcataattttttaatatttcccaagtgatgtttaacagagcaattcaaattgtcacagtattttatataatattatatcttcagcagaaattcctatttcttttagtttgcctgaaataatagttttaatataaaaaaaaatattttaaaaatcttattagccccttaaaattattgtatatattttttgattgtctaaatgttactttaagcagAATAATAGTatctttataataattttattattaataattttataaataatttttatttataataaatttattattattagaaattagttatcaaaactatcctgtttcaaaatatgttttctctgttaacagcacttggaaaatataaaaaaaatatataaaaaaaaatttaacacacACAGGGCAAATAATTTAGCCTTCAACTGTGTATTAAATGTACATTGCATATCTGAAACTAGAACCGTCAGTTTCACGAGATGTTTAAGATATTTTCCATTATTACTTAAAGCTACTATGAGTTTACTTTGCCTGGAGTAAGCTGTGCAACATTAAGCCTTATCAAAACTTGCCTAAAATTCATCGTCAGCTCTAAAATTCTACAGATATATTTGGTTGCATTGattgacagaaatgttgacttCATTTTTTAAGACAAAACACAACCTGAAATGTGTACATTCGGTAAAAGTGAACAATTGTTCAactcaaagcataaataaaagagttttttttttttacatatttggaattTCTACATCAAGCTTTCGCTGTTTTGGCCACAATTACAGACCCTGGATGTGCACTAGTGCATGAGAGCACTGCAAAAATTGCTTTACTTACTTAAGGTTTttctcttgtttctagttcaaatatctaaacattcttaaattaagatgcattttctagacaagtttttgttttcagaaattattTGTGATGGGAATAAtggttttataaataaacaatgttactAACGGAATTGCTTCTTTCAGTAACGagtaatcaaataaattacaGTTTCCGTTGTTACAACGCTATTACCATCACTAACCATTATATGCTGTGTTATATAATTGATATTTCATTTACAATTGGGCTCACTGACAAGGTTTTCATCCACAGAGGTTGGACAACCACATAACTCATGATGATTGGGGATTGTGCCTAgtggtgggacaaccacataactgatgatgattggtgaGTGTGTGTAagggtgggacaaccacataactgataaTGATTGTAGAGTGTGTGTTTAAGGCTAGGACAACCATATAACCGATGATGATTGgtgagtgtgtgtaagagtgggacaaccacataactgatgatgattggggAGTGTGTGTAGAGacgggacaaccacataactgatgaataTTAGGGTGTGTGTGTAGGGGCGGGATAACCAGATAACTGGTGATGATCGGGGACTgcgtgtaggggtgggacaaccacataactgataaTGATTGGAGATTGTGTGTTgggtaataatattataataaaatagaatagaatggtgtacaatgttttatttataataatttatttattttagtgtccaatttattaaacatacagcggtcactttttggacatttttaaaaattaacgcAATAGTTACTTTCGCTGGTAATTAGTTAGTTTTATAATGATGTAATCCAGTTACTAACtttttttacttactttttatgagaagtaactagtaactataacaaatgttttaccttaaatcaagcaaaataaactGCCAATGGCATAAGCAAAACAATTTTGGTTTCAGTTTGAAATAAGAACATTTTATTTACCCTAATGGAAGATTATTTAGCtagttttaacaaaaaaaaactcagataATTCTGACTTACtgattctgaaaacaaaacaatattttgaatttgtgtAGAAAGTGCTTCTTGACTgaagaatttttagatatctgGCCCGAAAACTGGACAAAAATCCTAAGCAAGTagaatttcttttagttttttttttttgcagtgagtaAAGCTCAAAGAGGGCTGGCAAAACAAGTGCTAGTATTGCATAAGTTTTCACAGGAGCGTGAAAAGGATTGTGGGT

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0022612 gland morphogenesis biological_process
GO:0035270 endocrine system development biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0035295 tube development biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0048850 hypophysis morphogenesis biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048852 diencephalon morphogenesis biological_process
GO:0048853 forebrain morphogenesis biological_process
GO:0048855 adenohypophysis morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0033504 floor plate development biological_process
GO:0033505 floor plate morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0048869 cellular developmental process biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0007399 nervous system development biological_process
GO:0021983 pituitary gland development biological_process
GO:0021984 adenohypophysis development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007417 central nervous system development biological_process
GO:0007418 ventral midline development biological_process
GO:0007420 brain development biological_process
GO:0030900 forebrain development biological_process
GO:0021508 floor plate formation biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0021510 spinal cord development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072294 False 4741 lncRNA 0.32 3 51581729 51586703
TCONS_00072293 True 4651 lncRNA 0.32 2 51581729 51586703

Neighbor

gene id symbol gene type direction distance location
XLOC_036038 NA coding upstream 415880 51160606 ~ 51165849 (+)
XLOC_036037 DISP3 coding upstream 434135 51050554 ~ 51147594 (+)
XLOC_036036 si:dkey-32e23.4 coding upstream 554188 50979018 ~ 51027541 (+)
XLOC_036035 CR855300.1 coding upstream 613730 50966806 ~ 50967999 (+)
XLOC_036034 NA coding upstream 618840 50953776 ~ 50962889 (+)
XLOC_036040 klhl22 coding downstream 121078 51707781 ~ 51726902 (+)
XLOC_036041 NA coding downstream 188719 51775422 ~ 51778591 (+)
XLOC_036042 gna14a coding downstream 372265 51958968 ~ 51986997 (+)
XLOC_036043 FQ790367.1 coding downstream 575158 52161861 ~ 52162964 (+)
XLOC_036044 ube2d4 coding downstream 697372 52284075 ~ 52297799 (+)
XLOC_036030 NA non-coding upstream 876077 50531703 ~ 50705652 (+)
XLOC_036029 NA non-coding upstream 1067696 50508918 ~ 50514033 (+)
XLOC_036027 NA non-coding upstream 1308251 50256786 ~ 50273478 (+)
XLOC_036053 NA non-coding downstream 1010685 52597388 ~ 52604066 (+)
XLOC_036056 NA non-coding downstream 1064448 52651151 ~ 52652449 (+)
XLOC_036058 NA non-coding downstream 1180752 52767455 ~ 52780637 (+)

Expression


Co-expression Network