XLOC_036048 (zgc:77112)


Basic Information

Item Value
gene id XLOC_036048
gene name zgc:77112
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 52442622 ~ 52447101 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070568
CGAGCAGGTAGATGACATACACCAGATAGCCTTTCAGCGGATAATCCAAtgataaaatgaaagcacaCATTGGCTCTGTTTAAAGTGTTTGTGGCCACTTTGGAGAAGGAAGTTTTGAAAGACAGTTTTGGGTTTTGTTGCATCCTGCAAGATGAGTTGTGCAAATGTGATGTCGCGGTTTGGGCCGCCGGTGTCCGTGCGGTCGGTGGATATGGCGGTGGGTTTCCGGTGCAGAGGCTCTCCACACATCAACCATCACCTGCTCATGTCTTCACCCAAACCACTGCGGCCCTGCATCTCCCATCAGCCGGTGTTTGAGTACCGACATTCCCCTTCCACGGGCCTCCTTACCAAAAATGGCCGCCGTGAAAAACGCGTCGCGTTTGCGGACGCTAAAGGCCTGGCGCTCATCACAGTGCGCCTGTTCACCGAGAAAGAGGACAACATCCCGCGCGAACCGCTTAAAATCCCGAGGCTGAAGAAGCTGGGCTGTGCTAAAGAGCCCGCTAAAGCGACTTCGAGGCTGAAGCTCGGGTTCGAGCAGCCGTGTTGTGATTACCAGGCGTTCAGAAACCGGCTGCAGGAACACGCGGTGCTGTTAGAGAGCTGCAACGTCACCAAACGCTCCGTTCTCGGCACCGTTCGCGTCAAAAACGTGTGCTTTGAGAAAGCGGTGCACGTCCGTATCACTTTCGACAGCTGGAAAACTTACCTGGACGTTCCGTGCACGTACCTGGATCGGTGTTACGGGGAACCTGGAACCGACGTGTTTGAGTTCAACATCAGCGTCCCTGAAGAGATAGACCCGCGTGAACGCGTCGAGTTCTGCGTTTCTTACTTCCCGGCGACGTTCGCCGCTGCTGAATGGGACAATAATAACGGCAAAAACTACTGCATACAGGTGTGTGACTGAATCTGCACAACAGACATAGATCAATACATGTGTAATAGACGCCTGggctaaaacaaaactaaatttgggctgtcagtgaacatctaaCGGACGAATAAAAATAGACTAGTCAGCAAATACACTGGAATAAATGTGAGGGCCGTTTATGACTGATGATTAGTAAAACTTTGTGCTATTCTTAGACATGTTTTGGAtatttcactgacagcccaaatttagatTACTAGTCAACATCCATGCTAGACGTCTAATGTCCAacttaaacacaaaattgcttggtggCTCCTTTACTTTTGTCACCTGCTTGCTACTCTCCCGTTTATTAGCACAGAACTGACTGAAATGTGGTGCCATGAACGTTTTGTTGGGGGGAAAAAAGACCTTGCTTGCTGATGAAATGCATGTTATGGGTAATGCAGTATTTTATAATGACCAATGTTTATATCAGGTGCGTTTTTCTATTTTTAGAGAAATGAATTTTTAGATGATCGACCTGTAAGCACTTTAACATGTTTCTTGAACTTTCATACTGTGGGTAATTTAAGTTTTATagtgaatatttttatataaaataaagtttaatatttaCTTGG
>TCONS_00070569
CATTGGCTCTGTTTAAAGTGTTTGTGGCCACTTTGGAGAAGGAAGTTTTGAAAGACAGTTTTGGGTTTTGTTGCATCCTGCAAGATGAGTTGTGCAAATGTGATGTCGCGGTTTGGGCCGCCGGTGTCCGTGCGGTCGGTGGATATGGCGGTGGGTTTCCGGTGCAGAGGCTCTCCACACATCAACCATCACCTGCTCATGTCTTCACCCAAACCACTGCGGCCCTGCATCTCCCATCAGCCGGTGTTTGAGTACCGACATTCCCCTTCCACGGGCCTCCTTACCAAAAATGGCCGCCGTGAAAAACGCGTCGCGTTTGCGGACGCTAAAGGCCTGGCGCTCATCACAGTGCGCCTGTTCACCGAGAAAGAGGACAACATCCCGCGCGAACCGCTTAAAATCCCGAGGCTGAAGAAGCTGGGCTGTGCTAAAGAGCCCGCTAAAGCGACTTCGAGGCTGAAGCTCGGGTTCGAGCAGCCGTGTTGTGATTACCAGGCGTTCAGAAACCGGCTGCAGGAACACGCGGTGCTGTTAGAGAGCTGCAACGTCACCAAACGCTCCGTTCTCGGCACCGTTCGCGTCAAAAACGTGTGCTTTGAGAAAGCGGTGCACGTCCGTATCACTTTCGACAGCTGGAAAACTTACCTGGACGTTCCGTGCACGTACCTGGATCGGTGTTACGGGGAACCTGGAACCGACGTGTTTGAGTTCAACATCAGCGTCCCTGAAGAGATAGACCCGCGTGAACGCGTCGAGTTCTGCGTTTCTTACTTCCCGGCGACGTTCGCCGCTGCTGAATGGGACAATAATAACGGCAAAAACTACTGCATACAGGTGTGTGACTGAATCTGCACAACAGACATAGATCAATACATGTGTAATAGACGCCTGggctaaaacaaaactaaatttgggctgtcagtgaacatctaaCGGACGAATAAAAATAGACTAGTCAGCAAATACACTGGAATAAATGTGAGGGCCGTTTATGACTGATGATTAGTAAAACTTTGTGCTATTCTTAGACATGTTTTGGAtatttcactgacagcccaaatttagatTACTAGTCAACATCCATGCTAGACGTCTAATGTCCAacttaaacacaaaattgcttggtggCTCCTTTACTTTTGTCACCTGCTTGCTACTCTCCCGTTTATTAGCACAGAACTGACTGAAATGTGGTGCCATGAACGTTTTGTTGGGGGGAAAAAAGACCTTGCTTGCTGATGAAATGCATGTTATGGGTAATGCAGTATTTTATAATGACCAATGTTTATATCAGGTGCGTTTTTCTATTTTTAGAGAAATGAATTTTTAGATGATCGACCTGTAAGCACTTTAACATGTTTCTTGAACTTTCATACTGTGGGTAATTTAAGTTTTATagtgaatatttttatataaaataaagtttaatatttaCTTGGCTTCTGCTGTTTGTCATTTTGTCAAGGATTTCTTACAAGAGTGTAACTTTTGGTTTGGGAAGTGAGGGTATTGGTGCCCCAGAATGTGGAAAATGTTTCATCCCATCTATTTAGGGATTGTTGCTGCATAATTCAGGGGGAAATTAAGCTAATTCGTTTTTCTTCAGCTTggtctccatttcagaggtcgccacagcggattgaaccgccaaatattacagcatatgttttacacggtggATGTCCAAGccatcactggcaaacacccTGCAACCTCCACAAGCTATATTTCCATCCGAAAATGTGAATTAACTAGGCtcaactggattatcgcataaaagacgttcaactaagggtgctttcacacctacacttttgtttcggaacgtgtctcgtttgcccagttagcgcggttcgattggcatatgtgaacagggcaatcgcgctctgttccgcgccaaagtaatcgctccgagatcgcttgaatgaggtggtctcggctcgattgaaacgaaccctggagcggttcgattgcagtgagaaagcgatccgagcgcggttatatcacagtgttttatggatatgtaataggcttacggctatatgaagagagaattatgagtatggcgggaagtttcgcgagtctccggatgctcgcaaacgagtgatgatctcccggtaatctcgcgtctctttcccagtcctcaaataggcatcgtcccgcacccttctcacccctctccaccgcatctctcctcagacacatcgcgcgcaccctgtcaatcaccaccaaaccaccacctctcctgacagctgagcgggactctgcaaaataaaccctgacactctgaccaatgtgaggagagtttactcgcacgtgacttgttttagctattttggtccgtttagaaactttgcaatgtgtaagcgaaccgctccaagagcaaagagcaacaatgtaacaattgtaatctctgtttcggaacaactgaatcgattcacaggtgtgaaagcaccctaaagcagCGCTTTCATCCAACGAGTCCaagcgaacaaaatcatcacttcctcaTTAACTGCTGCCAAACATCAAccataaaaactgaatttgct

Function

symbol description
zgc:77112 Predicted to enable glycogen binding activity and protein phosphatase 1 binding activity. Acts upstream of or within response to yeast. Predicted to be part of protein phosphatase type 1 complex.

GO:

id name namespace
GO:0001878 response to yeast biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005977 glycogen metabolic process biological_process
GO:0005979 regulation of glycogen biosynthetic process biological_process
GO:0000164 protein phosphatase type 1 complex cellular_component
GO:0008157 protein phosphatase 1 binding molecular_function
GO:2001069 glycogen binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2219 Predicted to enable glycogen binding activity and protein phosphatase 1 binding activity. Acts upstream of or within response to yeast. Predicted to be part of protein phosphatase type 1 complex.

Ensembl:

ensembl_id ENSDARG00000015657

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070568 False 1506 mRNA 0.46 3 52442622 52445988
TCONS_00070569 True 2552 mRNA 0.47 2 52442785 52447101

Neighbor

gene id symbol gene type direction distance location
XLOC_036047 gins4 coding upstream 11100 52415614 ~ 52431522 (+)
XLOC_036046 arid5a coding upstream 39357 52377516 ~ 52403265 (+)
XLOC_036045 dbnlb coding upstream 91938 52314542 ~ 52350684 (+)
XLOC_036044 ube2d4 coding upstream 144823 52284075 ~ 52297799 (+)
XLOC_036043 FQ790367.1 coding upstream 279658 52161861 ~ 52162964 (+)
XLOC_036049 FO704661.1 coding downstream 31925 52479026 ~ 52490474 (+)
XLOC_036050 RNF122 coding downstream 44335 52491436 ~ 52510317 (+)
XLOC_036051 si:ch1073-392o20.2 coding downstream 68087 52515188 ~ 52530506 (+)
XLOC_036052 stambpb coding downstream 83788 52530889 ~ 52547957 (+)
XLOC_036053 NA coding downstream 150287 52597388 ~ 52604066 (+)
XLOC_036041 NA non-coding upstream 664031 51775422 ~ 51778591 (+)
XLOC_036039 NA non-coding upstream 855919 51581729 ~ 51586703 (+)
XLOC_036038 NA non-coding upstream 1276773 51160606 ~ 51165849 (+)
XLOC_036035 CR855300.1 non-coding upstream 1474623 50966806 ~ 50967999 (+)
XLOC_036056 NA non-coding downstream 204050 52651151 ~ 52652449 (+)
XLOC_036058 NA non-coding downstream 320354 52767455 ~ 52780637 (+)
XLOC_036060 NA non-coding downstream 432324 52879425 ~ 52887683 (+)
XLOC_036061 NA non-coding downstream 550439 52997540 ~ 53028669 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000050_02778979_02781848 NA coding CI01000050 null 2778979 ~ 2782645 (+)