XLOC_036057 (bcl2l16)


Basic Information

Item Value
gene id XLOC_036057
gene name bcl2l16
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 52701811 ~ 52716316 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070585
CTGAAATTACTCTGAAAGCATAcgttataaacaaacacacactgtataGGCACAGAAAGGTTATGAGCGCCTCTTGTCCGAGTGTTACTGCGTGTGGAGTATTTATAGCTGTACCCATGAAGAGTCTTAGTGTCATTGGATAACTGTTCATGCACTGGATCTGTTACAGACAACAGAAGGAAATATAATCAACGACAGCATGCACATGTGATCGGTTCCCTCTTGAGAATCTCCAGTTGTATGTTGCACTTCTGTCAGCTGTTAAATGATCCCAGTTGTTTGGTCATGGCATGATTCACGTCTGTGAGAAAAGGATCTGGATAATCAGAACACGCAGCTTATATAGATGACAATGGCATGGATGGAGACCTAAACACAACATTCGGACATTTAAAGTTTGACCTGTGTGTATCTGAGCTGATGGGACGGTCAGACGACGCTGTGATTGGTCGAGGCCTGAACAGTCCAGATCCACTAGTGCGTGAAGCTTTTCTGATGGCGTACGACTACATCAGCTACGTGACAGCCAAACCAGGCGTCCCGTTGTGTCCGGCACCTTCCCGTGCTTCCGCTGCCCTGCGCCACGCTGGAGACGAGCTGCTGATCCGCTTCCCGATCTTCTTTCGCCGCTGGCCGAGAGTTTTCCAGGACGTGACGGAGCACACGGCCTGCCCCACGCTGCTCTCCATCCTGGACGAACACTTCGCTCCCACGAGGCGCAGGGATCTGGCCTGGAGCGCCGTGCTGTCGGTGTTCGTTCTGGCTGGTCAGCTGGCTCTGCACTGCCAGGACAGGGGCATGGAGGACATCACGCCGCAGATACAGGAGTGTGTGGGCAGCTACGTGGAGAGGGTCATCTGCCCCGAGATCCGGGACAAAGGAGGATGGTCAGGTTTTATCTCTCGCTTTGGAGAAAAGCAGAATCTTGAAGACCATGTGGTAAAGGTGTGTTGCTGGTCTCTGCTCCTGCTGTGTGTTGGCATCTTATCCTATTTCATATGGACAAGAAGAAAAACCTAGtcaacagcgccacctgctgacaataTATAGTAAGGACACTCACGACTATCAACATAAATGTGGTAAGATTGATTAAAAATTAAGAATTACTGCTGATTGATAAATGCTATGAATTGTAAACCTTCCATTGTTAATAGGCTAATTGCAATGCTATCAATATCTGTGCATAGTTTAATACTACAGGAAATAATACCACAGTATAGTGTAAAATGTTAGTTTAGTATATTCTGCAGTGAATTTATTAACTGTAGGATACTTTACAAGTAAACCAGTCTCATGTTAGTATTTAGTTTGGCATAGCAGTTATACTTTGTTGATGTATATGCCAGACTATTGACAGAACTGTTGTGAACTGATATCTTCAAAGAGCTGCTAATGTGAAAAGTGTGTTCAGTGTGCTTTATAATGTGGTAAAATGATTTACAACATTTGATCTTTTTAGTAAACAGTGATATGTCGAGTTTCTGATTGCCTTACAACttggtttaaaatgtattaagtcTAAAATTCCCCGAATATGTCCTTATTCATTTATTGATGTAGTAATTATTTACTATAATGACTTTAAATAGTATATTTAACACAATAAATTACTACATTATCTGGTTTTTACTATAGTTAggttatatatgatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgagcaattctgtGCAAATGTCAACTTTCCTATGAAAAAAATTTGGTTTTTAACAAAATACGGAAACCGTTTTCAGGTTTTCTTTtataagcaagtattttacagtacttttgaaatactcaaaaatgaatctgtcagtgttttcaaactattttatttgatttactagTCACACAAGTATCAATTTCACATCCAAAACGACACTTTTTTctaataaatgtgaaaatacaaaataaaactagtaatttttgttttatagagagccaactcatacccttttgattatcattgtttcttttgggttgtgcagtttaattcacagaatttctacaaagtatgttgtattctGTAAACCCGCATTGTATTTTCTACGttaaaagtacaaaacatgtttacaaattGATATTTTTTTGGTTCCTGAACTCTGtagtcagttgttctggaaaatataaacaagtgttaatataatattaacatatgctttctatgtgaatttacgtttcaagtttttattgtaaatgtcACATCCtgaacgctggaattgctcatatgtatatatatttatatatatatatacataccggTCTCTCGTTATGTTATAGATCTGTTTATTTAATCAAGTTTACTGTAAAAGTGAACGTTCTGTCCCCCTTTGGAATATAAGATACTTTGAGAAATGGTCAAGGAAATTGGTTACAAATTTCTCTTAATGTTGTGTTTTAATGATgcttaattattaaatgtttaactatGATACATAATGTATGAAATGCAATGCATCACTAGTTGATTAACAGTTTTATTAGCATTTATAaccatgtttaatttttaaatgatattaatgTTTAAGTACCAATAAAAGTACAATATTGACTTAACTACCAGTAATCCATTTATTCCCTTCCAACTTCAAAATGTATTCACAAAATTGAAGTTTCGCACATCGTTTACTTGCACACATCGTGTTCTACCATTCTAATGCATTGGAAAGTTCTATAATGGGACTGTTGAATCTTATGACTGGTAATGCAAATATACTTCTGGCACAAGATCAGTTTGATGTCTAGAGGCAATCCCAACAGGTTTAACAAGGATCTGTCAGTGTATGTGACCAGTGAAGAATGAGGATGGGTTAATTCACATGATCAAATTCTTAAAGCAATGAAAGAGAAAGAcgttttaacagaagaaaaagccTTTTATTGACATCTGTACAAACATGAGGAGGAATAGAACAAAAAAACAGGACTTTGGAAGGTTTATTTTCCTTTTACATGAGCAAAATGATACAGCCTGGAAAACGACACGTATATTAATGCGATTTAAGCCAGCTCTTCCTCTCCCTCCTCCTCAAACTCGCCCTCCTCCTCGGCGGTGGCGTCCTGGTACTGCTGGTACTCAGACACCAGGTCGTTCATGTTGCTCTCTGCCTCGGTGAACTCCATCTCATCCATACCTTCGCCTGTGTACCAATGCAGGAAAGCCTTGCGCCTGAACATAGCCGTGAACTGCTCGGAGATGCGCTTGAAGAGCTCCTGGATGGCAGTGCTGTTTCCGATGAAGGTGGCGGCCATTTTCAGACCACGAGGCGGGATGTCGCAAACGGCGGTCTTGACGTTATTTGGGATCCATTCCACAAAGTAGCTGCTGTTCTTGTTTTGAACATTGAGCATCTGCTCGTCGACCTCCTTCATAGACATGCGGCCACGGAAGATGGCGGCGACTGTGAGGTAGCGGCCGTGACGCGGGTCGCACGCAGCCATCATGTTTTTAGCATCAAACATCTGCTGTGTGAGCTCGGGTACGGTTAGAGAGCGGTACTGCTGGCTCCCCCTGCTGGTCAGAGGAGCGAAGCCGGGCATGAAGAAGTGGAGACGGGGGAAGGGCACCATGTTGACGGCCAGTTTGCGGAGATCGGCATTGAGCTGGCCGGGGAACCTGAGGCAGGTGGTCACACCACTCATGGTGGCAGATACGAGATGGTTGAGATCACCGTATGACGGTGTGGTGAGTTTGAGTGTGCGGAAGCAGATGTCATAAAGAGCCTCGTTGTCAATGCAGTAGGTCTCGTCTGTGTTTTCAACCAGCTGGTGAACCGACAATGTGGCGTTGTAGGGCTCCACCACAGTGTCAGACACTTTGGGTGAGGGCACCACGCTGAAGGTGTTCATGATGCGGTCGGGATACTCCTCACGGATCTTGCTAATGAGGAGGGTGCCCATACCAGAGCCCGTTCCTCCACCCAGGGAGTGGGTGAGCTGGAAGCCCTGCAGGCAATCGCAGCTCTCTGCCTCTTTGCGAACCACATCCAGGACAGAGTCCACCAGCTCTGCTCCCTCTGTGTAGTGGCCTTTAGCCCAGTTGTTTCCAGCACCACTCTGACCTGGTccaaatgaatgaaaattcttAATTTTCAAATttgtacaataaataaatcaattagttatttaaaatgaaaacccaCCAAAAACAAAGTTATCTGGTCTGAAAACCTGACCGAAGGGTCCGGACCTCACAGAGTCCATAGTACCAGGCTCCAGATCCACCAACACAGCACGGGGCACATATTTACCTCCTAAAAGATTACAAATACAGGGTTAAAATGGTTTGCCTTagcaaacaataaaagaaaattataatatCATTTGTGAAACATCATAAAATGTCAAGCTGTTGCACCTGATGCCTCGTTGTAATAGACATTGATTCTGTCGAGTTGAAGGTCGCTGTCTCCATGATATGTTCCAGTGGGATCAATACCATGCTCGTCACTGATCACCTCCCAGAACTAATGAAAAAGTATATATGTATTAGTGTCAAAAAACAGACAACCATTAAATGTAAAATCAAGTaagcagacaaaaaaaatcatatggACTGACATTATAGTCATTTAACTGCTTTTCAAATGATAACATACTTGATGTTACAAAAACAACAATGTTCTCAAACGCACTTCTTATCACCACTAAGTATAAGCATCGTACATtacattttatgaagaaaatgtgTCCACATTATGCTTTTATTAACGATTTATATCGGTTACATCTGGTCGACGTCGTAAACAATTCGTTTTCTTTAAACTCCTCCCGCCTAAAATTCGCGCGCGCGCCATGAACGCCGGTTGGCTGAAATCCATTTCCGGTGCGTTTCAACCTAATCGATTTGCTGATGCGAAAATATCTCTAAAAATTCCATAGATATCAAAATCAGCAGATTTGGTTTTGGGTTTCATACGATTTATTGTGTACTACTATTGTAGTCCAAAAGCCGGTTTTTGGGCGCATTTAAAACGCGCTTAAACGTCTACTTCCTTTTTGCCGCACTGCAGTGAATCTGACAAAGGGAAGTTCCAGACAGACGCCGGTGAGCATGACCAGCTGGCACAAAAATTACACATCCATCGGACGACTGCTAAATTTCGTCGTTTTACAAAATATATCAATCGTTttacaattgaataaaataaacatcaaatgGGAAAGTACATGGATGACCTAGATTTCATTCAAACGACTTCAGAATCTCATTTTTAGGCGGGTCGTATTGTACTGCGAACAATACAGCacattgaaaacaaaattaatttaatttagcatTCATTTTTACAATTAACTCAAATAAAATGTAGATTGTTGATTGATATAAACCTCCCATTATGTAAATACACAATAAACCAACAACTGCAGATTTGTACTAAATGAACACCAACCTTGGCTCCAATCTGGTTTCCGCATTGTCCAGCTTGAAGATGCACGATTTCCCTCATTTTAGCTCGAGTGATTTGGATTTGAGAAAGCAGCGAACCTTTTCCTTTCTTCAACTGGCTGGGAGTAGACACTTCCCCCATATAAATAGACTCTGCCCTTCCCCCGCCCTCACAAGGCTAGTATGTATCAGCACGCCATTAGCTGTCTTCGAAGAACCACCCTACCAAGCGTCATTCTAACCAATCACGGTTGACCTTGAGAATGCGGATTGGCCCTCCTCGCCTGTCAATCACATTTCATTCCAACGTATGATTTTATACCGCAGCAGGTTTtgtaaaggaaaaaaagaaaatagtcgACATACCACATAAGCAAAGCCCTGTAATGAAGCTGTTAATCAAACACTGAAAACGCGTTTGTGTATGACACTGAAATGTTTTGTATGCCAATGTTCAGTctaaacagataaaaataaaaacaggaagtGAAATGTAACATATTTACACGTCAAAGACATACATTCAatagataatttaataaataaacaca

Function

symbol description
bcl2l16 Predicted to enable protein heterodimerization activity and protein homodimerization activity. Acts upstream of or within several processes, including calcium import into the mitochondrion; gastrulation; and positive regulation of cysteine-type endopeptidase activity involved in apoptotic process. Located in mitochondrion. Is expressed in somite.

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0042981 regulation of apoptotic process biological_process
GO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:2001243 negative regulation of intrinsic apoptotic signaling pathway biological_process
GO:0043009 chordate embryonic development biological_process
GO:0043065 positive regulation of apoptotic process biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0007015 actin filament organization biological_process
GO:0036444 calcium import into the mitochondrion biological_process
GO:0097192 extrinsic apoptotic signaling pathway in absence of ligand biological_process
GO:0008630 intrinsic apoptotic signaling pathway in response to DNA damage biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0005515 protein binding molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-140619-1 Predicted to enable protein heterodimerization activity and protein homodimerization activity. Acts upstream of or within several processes, including calcium import into the mitochondrion; gastrulation; and positive regulation of cysteine-type endopeptidase activity involved in apoptotic process. Located in mitochondrion. Is expressed in somite.

Ensembl:

ensembl_id ENSDARG00000114237

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070585 True 5997 mRNA 0.40 4 52701811 52716316

Neighbor

gene id symbol gene type direction distance location
XLOC_036056 NA coding upstream 49362 52651151 ~ 52652449 (+)
XLOC_036055 si:dkey-90l8.3 coding upstream 54021 52637507 ~ 52647790 (+)
XLOC_036054 ccn1l2 coding upstream 70747 52619365 ~ 52631064 (+)
XLOC_036053 NA coding upstream 97745 52597388 ~ 52604066 (+)
XLOC_036052 stambpb coding upstream 153854 52530889 ~ 52547957 (+)
XLOC_036058 NA coding downstream 51139 52767455 ~ 52780637 (+)
XLOC_036059 adgrd2 coding downstream 72681 52788997 ~ 52826181 (+)
XLOC_036060 NA coding downstream 163109 52879425 ~ 52887683 (+)
XLOC_036061 NA coding downstream 281224 52997540 ~ 53028669 (+)
XLOC_036062 NA coding downstream 300761 53017077 ~ 53017557 (+)
XLOC_036043 FQ790367.1 non-coding upstream 538847 52161861 ~ 52162964 (+)
XLOC_036041 NA non-coding upstream 923220 51775422 ~ 51778591 (+)
XLOC_036039 NA non-coding upstream 1115108 51581729 ~ 51586703 (+)
XLOC_036063 NA non-coding downstream 301860 53018176 ~ 53019480 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G74140 NA non-coding NC_048565.1 CM023219.2 66785084 ~ 66785570 (+)
eurasian perch (Perca fluviatilis) G61139 tubb2b,tubb4b,LOC103024866,LOC101061694,LOC105901187 unknown NC_053117.1 CM020914.1 12921147 ~ 12923836 (+)
mexican tetra (Astyanax mexicanus) G60753 NA non-coding NC_035902.1 CM008305.1 51850389 ~ 51851299 (-)