G1690139 (LOC106589859)


Basic Information

Item Value
gene id G1690139
gene name LOC106589859
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36344291 ~ 36346030 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1933143
TTTACTGTACAAAACAGCTTGTTCATTCAGTGACGTCCTCACTACGTCTGCTGTGTCTTTGGTGTTGTCACTATCTATCTGAAATTATAAACTGGctggttccagccctgaatgctgattggctgaaagttgcggtatatttaagcaataaggcccgaggaggtgtgttatatgaccaatataccacggctaagggcagttCTTACGCAAGACAACGCGGAGtgtctggacacagcccttatcagtggtatattggccatatttcACAAACCCCCCGAGgtgacttattgctattataaactggttaccaacgtgattagagcagtaaaaatacatgttctgTCATACCCggggtatacggtctgatataccacagctttcagccaatcagcattcagggctcgaaccacccagtttattatAGAACGTATACCACAAGTATGATAAAACATGTacttttactgctctaattacattggtaaacagtttataattgcagtaaggcaccttgggggttggTGATATACGGCCGGATTGCATCGTGCCtaaaaacagcccttagccgtggtatattggccatataccacaccccctagggccttattgcttaatagCATCATCTGTGTCACTGTGAAACACCTACAAACCCAACATCAAACAAACAGTATCAAACAACATTGTCATAACTGTACATATCATACAAATTCATTATACAAATGGTTTCTCCAAAGAATTGCCGACTTGAAATTCCAGACGACGTCGGCAAaaatagtattttactgtaaAAAGTAACGGTGTGTAAAACCAGTAGCCAGGTCTTAAAAAGGCTATGTCCAGCATTTTGTTTAAAAGGCAACGATATAGTATACCACTTATAATACCAGTCCACTTTTCTTTCATTGTGAAATTAGACCACAGGTGTGAAACTCATTTGAATGCTTTGTGTCATTGGGTGAGGCAACAGAGCAAAAATAACCACAGATCATCCACAAATAGTGTACACATAGTACTATACAGTTGAACAGTTCATATGTTGACATACTGTATTCATGGAATCATATTACGCACTATACAGTCATATGGCTCAGACATGATCGGTGCTAGTGACCAGTAGTGTCAATCCACAGCCTCTGAACTTGGCAGGTTCATTCCACATCTTCGTTCCACCATGGAGCTCAGGTGGGACTCTTGTGGGTCTGGAGGCCTAGAACATCCAGTCCCTGTGACAACTTCCTGGTCTGTGGGGTTATGGGGGGCTGTGAGGGGTCACCCCTCATTGAAAACACCCTTGAAGCTCATGTGGCTGGCTCTTGGTGAGCCTAGATGAGCTGCAGTAGTGAGCAACACCAATTTCCTGTTCCTGTGATAACAACATACTGTCCCAAGGACTTCCTATTCCTGTTTCGAGCCGGTTGCTAGGAGATCTTGCAGCTGTTGCCGGTGCAGCTCTGTGCGGCCGCCGGGCTGAGCTGCTGAGGGcggatacattttttatttttcagcAGCTGGCCTCCGGTCCTCTTGGTGGCGATgtgggtggtgttggtggtggtgacagAGTAGGAACTTCCGTGCATCATGCGGGCATTGAGGCCGTTGGCCATGGAGAAAGACTTGAGGTGGGACTTGAGGGCCAGGGGGAGAGGAAGCTTGTCAACCAGGTGGACAGGGGTGCAAGACACGATGGAACGACAGCACAGGTCCTGGAGACTCA

Function

NR:

description
ras-related protein Rab-40B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1933143 True 1714 lncRNA 0.46 2 36344291 36346030

Neighbor

gene id symbol gene type direction distance location
LOC110499432 LOC106589856 coding upstream 96779 36207378 ~ 36247512 (+)
mrpl27 LOC106589850 coding upstream 164690 36173188 ~ 36179601 (+)
LOC110499428 LOC106589848 coding upstream 173392 36161203 ~ 36170899 (+)
LOC110499426 LOC106589844 coding upstream 186509 36125503 ~ 36157782 (+)
LOC110499422 arl3 coding upstream 298214 36037722 ~ 36046077 (+)
LOC118942466 NA coding downstream 77716 36423746 ~ 36423861 (+)
LOC110499434 LOC106589860 coding downstream 91175 36437205 ~ 36540905 (+)
LOC110499435 LOC106589861 coding downstream 207849 36468873 ~ 36564830 (+)
LOC118942015 LOC106589862 coding downstream 232696 36578726 ~ 36592198 (+)
LOC110499541 ankfn1 coding downstream 349745 36695775 ~ 36809459 (+)
G1690134 NA non-coding upstream 9355 36334117 ~ 36334936 (+)
G1690106 NA non-coding upstream 58919 36285133 ~ 36285372 (+)
G1690098 NA non-coding upstream 69164 36274888 ~ 36275127 (+)
G1690095 NA non-coding upstream 76586 36267505 ~ 36267705 (+)
G1690094 NA non-coding upstream 77426 36266564 ~ 36266865 (+)
G1690143 NA non-coding downstream 2813 36348843 ~ 36350560 (+)
G1690176 NA non-coding downstream 63212 36409242 ~ 36412502 (+)
G1690222 NA non-coding downstream 183966 36529996 ~ 36534868 (+)
G1690231 NA non-coding downstream 210570 36556600 ~ 36557674 (+)
G1690116 NA other upstream 31593 36304939 ~ 36312698 (+)
G1690099 NA other upstream 68348 36275482 ~ 36275943 (+)
G1690092 NA other upstream 79310 36264660 ~ 36264981 (+)
G1689732 LOC106612293 other upstream 218901 36120616 ~ 36125390 (+)
G1689671 NA other upstream 462417 35881578 ~ 35881874 (+)
G1690753 NA other downstream 532021 36878051 ~ 36880738 (+)
G1691142 NA other downstream 1195890 37541920 ~ 37543265 (+)
G1691189 NA other downstream 1304596 37650626 ~ 37654064 (+)
G1691267 NA other downstream 1458513 37804543 ~ 37809061 (+)
G1691990 aatk other downstream 1876475 38222505 ~ 38222735 (+)

Expression


Co-expression Network