XLOC_003621 (bicd2)


Basic Information

Item Value
gene id XLOC_003621
gene name bicd2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37049105 ~ 37088934 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007049
TTAAAACAAAGAAGCATGGAAATCCATCcaaatgtatctaaaatatgtcCATCAATCCACCGGCAGATGGCGGTATTGAGCAACATTTTGCGGAGAGTTTGGCATTCAGTCCCTGAACCATCTGTGCATCCTGTGTTGCCTTCGTGTACAAACAAAaagcattatgggtaatgtatTCTAACTCAAACCACAACCCAACTCAAAATCCAAACgcaaaactacattacccacaacaCCCGGGTCGCAAAATCAGTTCGTATTCCTGCCAGATGATCTCACAGAGCAAACCGAGTTCCCCCTCCTAATCTCAGGAATGACACCCGAAGTAGAGGAAATCATGGTCAAACATGGAGTATAAGTTTGTAAAATGTGTTTGCTACCTAAAAAAGATAAAACAGCGCATTCAGTAAACGTATGCGCTTTATACATTCGATGAACTTGATGACTGAGAACGAGGAATTAACGGGCTCGGTCCGTTATCGCTTGTAATAGACTGAGCCGGGGGACAAACATGTCCGGGGATGAAGACGGTTGTCCCGGGGCGCAACTGGTCACCGAGGCCGGGCCGAACTGGCTCCGGGCGGAGATCGAGCGCCTGAGCCGGGAGCTGAGCGAGACGAGCCGGGAGAAGATCCAGGCGGCGGAGTACGGTCTGGTGGTGCTGGAGGAAAACCAGCAGCTGAAACAACGCTTTGAAGAGCTGGAGAGCGAGTATGAGACCGTCAGACAGGAGCTCGACCAGCTCCGAGAGGCCTATGGCCAGGTTCACTCAACCCACAGAAAGGTGGCTGCGGACGGCGAGAGCAGGGAGGAGTCGCTCATCCTGGAGTCGGCATCTAAAGAGGCGTACTATGAGCAGAGGGTGCAGGAGCTGCAGTCGGACCTACGACAAGCTAAAAACACCCTCACCGGCACCCAGGCGGAGAACGAGCGCCTGGCCACCCTTGCCCTCGAGCTGAGAGAGAATAATGAGATTGTGGAGCTCCAGCGCAGTCGTCTGCGTGATGATATCCGAGAGTACAAGATCCGAGAGTCTCGTCTGCTGCAAGACTACACTGAACTGGAGGAGGAGAACATCAGCCTGCAGAAACAAGTCTCCACCCTTAAACAGGGTCAGGTGGAGTTCGAGGGACTCAAACATGAAAATCGGCGATTGGAAGAGGAAGTGCAGTACTTAAACAGCCAACTAGAGGATGCCATTCGGTTACGGGAAATCGCAGATCGTCAGCTAACGGAGGCTCTAGAAACCGTCAAGACCGAACGGGAGCAGAAAGCAGCCCTTCGGAAAGAGCTGACGCATCACATGACCTTGGGAGACTCCCTTCTCGCCAGCTCATTGGACGGACTCAAATTGAGTGCAGATGAACCTAATAATGACGATGCCATTCTGACTCTTGAAAACGGATTTGCTAAAGTCTGTGAAGGTAATGATGAAGATAACAGATTGTCTTCACCCAAGAGAGATGAAAATTTCCGTCCCGCACCAAGTCTGGTAGATGACTTGTTGACCGAATTGAACATCTCTGAGATCCAGAAACTCAAGCAACAGCTCTTACAGGTGGAGCGGGAGAAAGTCGCTCTTCTCACCACTTTACAGGACTCTCAGAAGCAGTTGGAGCACGCTCGAGGAGCGTTAGCTGAACAGCAGGAAGCTATGACAAGACTTAGCGATGATTTGGGCGCAATGCGGAGACTGCAGGCCGGCAAGGAGCGACAGTCGGCCCTGGACAGTGAGCGAGAGCGGGACAGTCGAGAGGACAACGATGTGGACTATTATGAGCTGGACATCAATGGGCCAGAAATACTTCGCTGCAAGTATGAGGTGGCCATAGCAGAGGCAGGTGAACTGAGGGAGGAGCTGAAGGGACTGAAGTCGGAGCATGATGAGATGAAAACCGAACATGAGGAAGTACGAACGCGACTGGAGGGACATGTACGTGACCTTAGTATTCAAGTGTCTCAACTGGAGTACAGTAGTCGTACAGATCGTGATAAAGTCGCTAAGCTAGAAAAGGAACTGAAGGAAGTGAGCGCAGTTGCAGGCGAGACCGAAGGAAGTCTCAGTGTCGCCCAGGATGAGCTTGTTGCATTTAGCGAAGAGCTGGCAAACCTCTACCATCATGTCTGCATGTGCAACAATGAAACCCCGAATCGTGTCATGCTCGATTTTTACAAAGAGGGTAAAGGAAGCAAGACGGAAACTAAAGATCGGCAGTCTACATTAACGCAAACTAATGAAAGTAAAGCCCAGACGTCAAGGTCAAACTCAATCCCTGTTGACAGAGAAGAGCCACGTCCCGAACCGATGGACGTCTACAACCTGGTTGCAATCATTCGGGATCAGATACGCCACTTGCAGAAGGCTGTGGACCGCACCACAGAACTGTCCCGGCAGAGAGTCGCCTCTTTAGAGTTGGCTGCAGTTGCGGATAAAGACCAAGCTGCTTGCATGGAGGAGATTTTGAAGCTCAAGTCCTTACTGAGCACCAAGCGTGAACAGATTGCCACACTCAGGACTGTGCTCAAGGCCAACAAGCAGACAGCTGAGGTCGCCCTGGCAAACTTGAAGAGCAAATATGAGAATGAAAAGGCCATGGTCACTGAAACCATGATGAAGTTACGAAATGAGCTTAAGGCTCTTAAAGAAGATGCCGCCACTTTCTCCTCTCTCAGGGCAATGTTCGCCACCAGGTGTGATGAGTATGTGACACAGTTGGACGACATGCAGAGGCAGCTGGCTGCGGCAGAAGATGAAAAGAAGACTCTGAACTCTCTCTTGCGAATGGCCATCCAGCAGAAACTGGCGCTCACGCAGAGACTGGAGGATTTGGAGTTCGACAACGAGCAGTCCCGCAGAGGATCTGGTGCTGGGCCTGGTGGCCGTGGGAAGGCTCCGTCAGGACGAGGTCGAGGACCCTTATCGTTTTCCAGCCCCCATGTAAGTCCTAGACTTCCCTGTAAGAACCGACCGCAACCGCACGGCCTCATTGGAAGTCCTGCGGTGTTCTGCAGCGAGAAGTATAAGATTCTGTGTGACACTGGATCTGATTAA
>TCONS_00007050
CGCAAAATCAGTTCGTATTCCTGCCAGATGATCTCACAGAGCAAACCGAGTTCCCCCTCCTAATCTCAGGAATGACACCCGAAGTAGAGGAAATCATGGTCAAACATGGAGTATAAGTTTGTAAAATGTGTTTGCTACCTAAAAAAGATAAAACAGCGCATTCAGTAAACGTATGCGCTTTATACATTCGATGAACTTGATGACTGAGAACGAGGAATTAACGGGCTCGGTCCGTTATCGCTTGTAATAGACTGAGCCGGGGGACAAACATGTCCGGGGATGAAGACGGTTGTCCCGGGGCGCAACTGGTCACCGAGGCCGGGCCGAACTGGCTCCGGGCGGAGATCGAGCGCCTGAGCCGGGAGCTGAGCGAGACGAGCCGGGAGAAGATCCAGGCGGCGGAGTACGGTCTGGTGGTGCTGGAGGAAAACCAGCAGCTGAAACAACGCTTTGAAGAGCTGGAGAGCGAGTATGAGACCGTCAGACAGGAGCTCGACCAGCTCCGAGAGGCCTATGGCCAGGTTCACTCAACCCACAGAAAGGTGGCTGCGGACGGCGAGAGCAGGGAGGAGTCGCTCATCCTGGAGTCGGCATCTAAAGAGGCGTACTATGAGCAGAGGGTGCAGGAGCTGCAGTCGGACCTACGACAAGCTAAAAACACCCTCACCGGCACCCAGGCGGAGAACGAGCGCCTGGCCACCCTTGCCCTCGAGCTGAGAGAGAATAATGAGATTGTGGAGCTCCAGCGCAGTCGTCTGCGTGATGATATCCGAGAGTACAAGATCCGAGAGTCTCGTCTGCTGCAAGACTACACTGAACTGGAGGAGGAGAACATCAGCCTGCAGAAACAAGTCTCCACCCTTAAACAGGGTCAGGTGGAGTTCGAGGGACTCAAACATGAAAATCGGCGATTGGAAGAGGAAGTGCAGTACTTAAACAGCCAACTAGAGGATGCCATTCGGTTACGGGAAATCGCAGATCGTCAGCTAACGGAGGCTCTAGAAACCGTCAAGACCGAACGGGAGCAGAAAGCAGCCCTTCGGAAAGAGCTGACGCATCACATGACCTTGGGAGACTCCCTTCTCGCCAGCTCATTGGACGGACTCAAATTGAGTGCAGATGAACCTAATAATGACGATGCCATTCTGACTCTTGAAAACGGATTTGCTAAAGTCTGTGAAGGTAATGATGAAGATAACAGATTGTCTTCACCCAAGAGAGATGAAAATTTCCGTCCCGCACCAAGTCTGGTAGATGACTTGTTGACCGAATTGAACATCTCTGAGATCCAGAAACTCAAGCAACAGCTCTTACAGGTGGAGCGGGAGAAAGTCGCTCTTCTCACCACTTTACAGGACTCTCAGAAGCAGTTGGAGCACGCTCGAGGAGCGTTAGCTGAACAGCAGGAAGCTATGACAAGACTTAGCGATGATTTGGGCGCAATGCGGAGACTGCAGGCCGGCAAGGAGCGACAGTCGGCCCTGGACAGTGAGCGAGAGCGGGACAGTCGAGAGGACAACGATGTGGACTATTATGAGCTGGACATCAATGGGCCAGAAATACTTCGCTGCAAGTATGAGGTGGCCATAGCAGAGGCAGGTGAACTGAGGGAGGAGCTGAAGGGACTGAAGTCGGAGCATGATGAGATGAAAACCGAACATGAGGAAGTACGAACGCGACTGGAGGGACATGTACGTGACCTTAGTATTCAAGTGTCTCAACTGGAGTACAGTAGTCGTACAGATCGTGATAAAGTCGCTAAGCTAGAAAAGGAACTGAAGGAAGTGAGCGCAGTTGCAGGCGAGACCGAAGGAAGTCTCAGTGTCGCCCAGGATGAGCTTGTTGCATTTAGCGAAGAGCTGGCAAACCTCTACCATCATGTCTGCATGTGCAACAATGAAACCCCGAATCGTGTCATGCTCGATTTTTACAAAGAGGGTAAAGGAAGCAAGACGGAAACTAAAGATCGGCAGTCTACATTAACGCAAACTAATGAAAGTAAAGCCCAGACGTCAAGGTCAAACTCAATCCCTGTTGACAGAGAAGAGCCACGTCCCGAACCGATGGACGTCTACAACCTGGTTGCAATCATTCGGGATCAGATACGCCACTTGCAGAAGGCTGTGGACCGCACCACAGAACTGTCCCGGCAGAGAGTCGCCTCTTTAGAGTTGGCTGCAGTTGCGGATAAAGACCAAGCTGCTTGCATGGAGGAGATTTTGAAGCTCAAGTCCTTACTGAGCACCAAGCGTGAACAGATTGCCACACTCAGGACTGTGCTCAAGGCCAACAAGCAGACAGCTGAGGTCGCCCTGGCAAACTTGAAGAGCAAATATGAGAATGAAAAGGCCATGGTCACTGAAACCATGATGAAGTTACGAAATGAGCTTAAGGCTCTTAAAGAAGATGCCGCCACTTTCTCCTCTCTCAGGGCAATGTTCGCCACCAGGTGTGATGAGTATGTGACACAGTTGGACGACATGCAGAGGCAGCTGGCTGCGGCAGAAGATGAAAAGAAGACTCTGAACTCTCTCTTGCGAATGGCCATCCAGCAGAAACTGGCGCTCACGCAGAGACTGGAGGATTTGGAGTTCGACAACGAGCAGTCCCGCAGAGGATCTGGTGCTGGGCCTGGTGGCCGTGGGAAGGCTCCGTCAGGACGAGGTCGAGGACCCTTATCGTTTTCCAGCCCCCATGTAATAATTTTATTAGCTCTGGAGATTATCCGCAAATGGTTACTCCACACGCTATACGtccagaatacacacacacacgcctggTCCAATGTTTGGACATTTTCCCTGGATGTGGCTGCAAGGAAACACAGGCTCACATCTACAGCCAGATGGTTCATGTACTCTTCTATTCTGACTGTTACTGTGGTATTttatttctgctttgttttttgtgtAACCGTGCACTTTCAGTGCAGTAGTTCATTTTATGTAACAGATGCACATTTCAGTATACTTggcacatttttgttttgttcttctaAATTTTACGTATTTaactgacaaaaaataataatataaggacgtttgtttgtttgtttgtttgtagtatTTTAAATGCCAGCATATTCCAGGGAGAACGCGTGTGTTAAATAGGCCTATATCTGTGTGTCTTATTCTTGCTCAATAGTCATACatttctaaaggctgatttatactttcgcctggtgcTGCATCGCAACCTCCGCTG

Function

symbol description
bicd2 Predicted to enable dynactin binding activity and dynein complex binding activity. Predicted to be involved in microtubule anchoring at microtubule organizing center; protein localization to organelle; and regulation of microtubule cytoskeleton organization. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and cytosol. Human ortholog(s) of this gene implicated in spinal muscular atrophy with lower extremity predominance 2A and spinal muscular atrophy with lower extremity predominante 2B. Orthologous to human BICD2 (BICD cargo adaptor 2).

GO:

id name namespace
GO:0070507 regulation of microtubule cytoskeleton organization biological_process
GO:0072393 microtubule anchoring at microtubule organizing center biological_process
GO:0033365 protein localization to organelle biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005829 cytosol cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0034452 dynactin binding molecular_function
GO:0070840 dynein complex binding molecular_function
GO:0008093 cytoskeletal anchor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120717-1 Predicted to enable dynactin binding activity and dynein complex binding activity. Predicted to be involved in microtubule anchoring at microtubule organizing center; protein localization to organelle; and regulation of microtubule cytoskeleton organization. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and cytosol. Human ortholog(s) of this gene implicated in spinal muscular atrophy with lower extremity predominance 2A and spinal muscular atrophy with lower extremity predominante 2B. Orthologous to human BICD2 (BICD cargo adaptor 2).

Ensembl:

ensembl_id ENSDARG00000075571

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007049 False 3052 mRNA 0.51 8 37049105 37084301
TCONS_00007050 True 3204 mRNA 0.50 9 37049347 37088934

Neighbor

gene id symbol gene type direction distance location
XLOC_003619 tkta coding upstream 13270 36989696 ~ 37035835 (+)
XLOC_003620 BX248521.3 coding upstream 54297 36994694 ~ 36994808 (+)
XLOC_003618 parapinopsinb coding upstream 260308 36777613 ~ 36788797 (+)
XLOC_003617 si:ch211-11c3.12 coding upstream 361838 36683859 ~ 36687267 (+)
XLOC_003616 si:ch211-11c3.11 coding upstream 365379 36675599 ~ 36683726 (+)
XLOC_003622 card19 coding downstream 6231 37095165 ~ 37101987 (+)
XLOC_003623 NA coding downstream 47866 37136800 ~ 37170438 (+)
XLOC_003624 itih3b coding downstream 89337 37178271 ~ 37200200 (+)
XLOC_003625 zgc:112265 coding downstream 112549 37201483 ~ 37229533 (+)
XLOC_003626 CABZ01065569.1 coding downstream 125174 37214108 ~ 37214223 (+)
XLOC_003369 CR854846.2 misc upstream 20926023 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 24337109 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 24354842 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 24363506 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 24369077 12679732 ~ 12680028 (+)
XLOC_003614 CR457444.3 non-coding upstream 390466 36657025 ~ 36658639 (+)
XLOC_003613 CR457444.4 non-coding upstream 392340 36653213 ~ 36656765 (+)
XLOC_003611 CR457444.6 non-coding upstream 408250 36600242 ~ 36640855 (+)
XLOC_003612 CR457444.10 non-coding upstream 435941 36612354 ~ 36613164 (+)
XLOC_003628 CR936337.1 non-coding downstream 275512 37364446 ~ 37364560 (+)
XLOC_003634 NA non-coding downstream 752323 37841257 ~ 37848711 (+)
XLOC_003636 NA non-coding downstream 906132 37995066 ~ 38000612 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00017244 LOC104966709 coding CM030122.1 CM030122.1 51624052 ~ 51627775 (-)