XLOC_036290 (rhoaa)


Basic Information

Item Value
gene id XLOC_036290
gene name rhoaa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 14170567 ~ 14184423 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070928
CCTTGGGGTCGTACAGGAAAAGATAAAGAAAGCGAGGACATCTGAAACGAAAACGATGGCTGCGATTCGTAAGAAGCTTGTAATCGTTGGAGATGGAGCCTGTGGAAAGACGTGTTTACTCATCGTTTTCAGTAAAGACCAGTTTCCTGAGGTTTACGTTCCCACAGTGTTTGAGAACTATGTCGCTGATATTGAGGTGGATTCAAAACAGGTGGAACTGGCTCTATGGGATACAGCTGGCCAAGAGGACTACGACAGGCTGAGGCCCCTGTCCTACCCAGACACTGATGTCATCCTTATGTGCTTTTCCATAGACAGTCCTGACAGTTTGGAGAACATCCCAGAGAAATGGACGCCAGAAGTAAAACATTTCTGCCCTAATGTTCCAATAATACTGGTGGGTAATAAAAAAGATTTACGGAATGACGAGCACACTCGACGGGAGCTGCAGAAGATGAAACAGGAACCAGTTAAACCAGAGGAGGGACGAGACATGGCTAATCGCATCAATGCCTTCGGCTACCTTGAGTGTTCAGCTAAAACTAAGGAGGGCGTGAGGGAAGTGTTTGAAATGGCCACAAGAGCGGCGCTCCAAGCCAAGAAACGTGGCAAGAAGAATGCCTGCGCTTTGCTATAGAGAACACAAGTGGAAAATGAGAAGAACGAGGGAGGGAAAAGGGGTAACCAAACACGGCCAAGGAAAATGAAAGAGCTCTAAAAGTTCGCAAATAGAGGGAAGAAACAGCCCCTAGTGTTAATTATGTACTCGGGGGTTCAGGGAGGGTCATTTTCAATCCAGGCCAAAAGAAACTACAGAAGATAGTAGGGACAGCTGCACCGGCAAACAAAAGGGACTTAAACATTTCACAAAAGGCCATCAGTCCTCTTTCAAATCAAGATTAGTTGACCTTAAAGCCTTCAGACTGATTGATCACGGAGCAAGGATAGCGTATTTGTAGAGTAAAGATTGACGTGGGTTCACAGTGATTGCGTTCGAGGTGGGATTAAATGCCATGTATTCTTTGGCCCCTTTGATTAGAAGATCAGCACTGTAAGCAAGAACTTGGTCTAAAAAAAATAGATTCCTTTTTTGGCAGTAAATGCATTATTCAGGGTGTAAAAGGCATTAGTTACTACCCTACATCGCTTATGCTACATGTCAAGCGGGGAGTTGTTTTTTTGGATCAAGACATTGGCGCACAATGTAATACTCTAGTTGACTACCTTAGAAACCTCCCAGGAACCCAGTGCCGTCTTATGTAAAACATTCATGACTGATTTTCtgatatatatacatttttttcttgcaTTAACACGCTAATACTGTTTGATAACACAACTGGTTCCTCTGTGCCCTCCTGTCCTGTCGCAGAATCGACGGTTTAATCGCTGGTTTAAAGTAGCTGAAAGTAGTAGTAGTCTTACAATTCTTTATTCCAGTTAAGTATATCTTGTACTTTGTTGCCATTTGCCTATAAAATTCTAAGTAAGATGCATTAAGCAATGATCATACTAATTCACCTTTTTGTGAGTATTTTATGTGCTTGCTCatgtattgtaattaaaaaaaagaacaaaaaaacaaaaacaattttgggTTAATCAGCCTTCGTGGAGCTCCAAGCAGAACTGCAGCTCTGTATGTTGACTGTCAGACACTGTTTGATtttggctatatatatatttatatatatagatacgTTTTTATCATAGGTGACAGTAATGTAATTTACCCCGTATTACTCTTTGCCTGCATGACAGGCTTTTATTTGGTGTGCAGAAATCAAATATATGTTTATCTCACTGTATAAATGAGAAGCTCCCTCCATTTTCACTCCATGTCTTTTTATTATTCCCCTCTTTCTTCTCCAGTACTgtgcattttttatgtttttttgttttgtgaaattcTACTGGCTTATACTATatcatttttgcatattttacaaATTCTAGTATCTTAGAATTGAATTAAAGAAGGACAAAAGATAGTAAAAATgtgactgagagagagagagagctgtttAATGCCATATTATTAAATGCAAGTCATTTCTTAGAAGAGATTCTGCATTTCATTGTAAGAGAAAAAGCCTTTGATGCGTCAATTATCTTTTGTATACCAGTGCATCTTTGGATTTCCACAGACTCATTTGAATTGTACTGAAAAAATAAATTCTTATAGGGTAACTTT
>TCONS_00070929
AAAGAAAGCGAGGACATCTGAAACGAAAACGATGGCTGCGATTCGTAAGAAGCTTGTAATCGTTGGAGATGGAGCCTGTGGAAAGACGTGTTTACTCATCGTTTTCAGTAAAGACCAGTTTCCTGAGGTTTACGTTCCCACAGTGTTTGAGAACTATGTCGCTGATATTGAGGTGGATTCAAAACAGGTGGAACTGGCTCTATGGGATACAGCTGGCCAAGAGGACTACGACAGGCTGAGGCCCCTGTCCTACCCAGACACTGATGTCATCCTTATGTGCTTTTCCATAGACAGTCCTGACAGTTTGGGTGAGATatctttaatattcatttatataagGCCAAGACTGAACTGCTGTGATCACTTTATTGAAAACCATCTTATACTCATGCAGAGAACATCCCAGAGAAATGGACGCCAGAAGTAAAACATTTCTGCCCTAATGTTCCAATAATACTGGTGGGTAATAAAAAAGATTTACGGAATGACGAGCACACTCGACGGGAGCTGCAGAAGATGAAACAGGAACCAGTTAAACCAGAGGAGGGACGAGACATGGCTAATCGCATCAATGCCTTCGGCTACCTTGAGTGTTCAGCTAAAACTAAGGAGGGCGTGAGGGAAGTGTTTGAAATGGCCACAAGAGCGGCGCTCCAAGCCAAGAAACGTGGCAAGAAGAATGCCTGCGCTTTGCTATAGAGAACACAAGTGGAAAATGAGAAGAACGAGGGAGGGAAAAGGGGTAAC
>TCONS_00070930
AATCCAGATTTTCACGGCTTCCATCATGACGAACCAATTGTGGATGAATGGAACATGAAATTGGCATTTTTCTTTTCCATTTCTTTGGTCATTGTTGTTGGAAGCACTTTCATTCACTATTTACCAGATCACGGCATGAGGCAGTGGGCTCGTCGGGAAGCTGAAAGGTTGATCGTACAGAGGGAAGCTGCTGGTCTTCCCGTCCTGACTGAAAATTACTACGACCCAAGCACCATTGTTCTCCCCTCTTCAGAAGAGTAGACAGCATATTGTCATTAATTATCCTGTTAATTTGTGTTGGACTGTACATTTGCCTCTCCTCAACTctattataataaaatgttataatatagCTGAATGTGGTATTTTCAGTTGCTGTTATTTTCATACTCATcattgataaaataaatgcactCTCAGTGAGCAGAATAAACTCAATtaatttaaagagaatgttaAAAACTGTAAAGCTTACAAACTTTTTAGCCATTCGGTGTGTGCATATGTCTTATGCAGAAGGCACATTAAAGAAATCagaaaaatatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatcaactatTGCTGTTCTCATAAACGTCATTGCATTCTCTCTGCCTCTGATTGGTGCGAAACAAGTACGAGTGGGCGTGTCCTAGCGGCGTGGCACCGTCTGCGGGGCGGGGCCTTGGGGTCGTACAGGAAAAGATAAAGAAAGCGAGGACATCTGAAACGAAAACGATGGCTGCGATTCGTAAGAAGCTTGTAATCGTTGGAGATGGAGCCTGTGGAAAGACGTGTTTACTCATCGTTTTCAGTAAAGACCAGTTTCCTGAGGTTTACGTTCCCACAGTGTTTGAGAACTATGTCGCTGATATTGAGGTGGATTCAAAACAGGTGGAACTGGCTCTATGGGATACAGCTGGCCAAGAGGACTACGACAGGCTGAGGCCCCTGTCCTACCCAGACACTGATGTCATCCTTATGTGCTTTTCCATAGACAGTCCTGACAGTTTGGAGAACATCCCAGAGAAATGGACGCCAGAAGTAAAACATTTCTGCCCTAATGTTCCAATAATACTGGTGGGTAATAAAAAAGATTTACGGAATGACGAGCACACTCGACGGGAGCTGCAGAAGATGAAACAGGAACCAGTTAAACCAGAGGAGGGACGAGACATGGCTAATCGCATCAATGCCTTCGGCTACCTTGAGTGTTCAGCTAAAACTAAGGAGGGCGTGAGGGAAGTGTTTGAAATGGCCACAAGAGCGGCGCTCCAAGCCAAGAAACGTGGCAAGAAGAATGCCTGCGCTTTGCTATAG
>TCONS_00070931
CGGGGCCTTGGGGTCGTACAGGAAAAGATAAAGAAAGCGAGGACATCTGAAACGAAAACGATGGCTGCGATTCGTAAGAAGCTTGTAATCGTTGGAGATGGAGCCTGTGGAAAGACGTGTTTACTCATCGTTTTCAGTAAAGACCAGTTTCCTGAGGTTTACGTTCCCACAGTGTTTGAGAACTATGTCGCTGATATTGAGGTGGATTCAAAACAGGTGGAACTGGCTCTATGGGATACAGCTGGCCAAGAGGACTACGACAGGCTGAGGCCCCTGTCCTACCCAGACACTGATGTCATCCTTATGTGCTTTTCCATAGACAGTCCTGACAGTTTGGAGAACATCCCAGAGAAATGGACGCCAGAAGTAAAACATTTCTGCCCTAATGTTCCAATAATACTGGTGGGTAATAAAAAAGATTTACGGAATGACGAGCACACTCGACGGGAGCTGCAGAAGATGAAACAGGTTTGTGAGCTTTCAATACTTTcaaatttttgtatattttaacgaattaattaattaaaagaggtttaatactaaattaaatattgtttaattaatattacagTAAGACATACCGACAGTGTGCCAATGGTTTTTGAGCACATGACAAcagtatttattgcatttattactCATGTGACATGCTCTATAGGGATTAGAATGCAGAATATATCACGAGtccttaaattatgtttaaaatgacagaagtgtacactacctgacaaaagtcttgtcgcctatccaagttagGAACAGTTAAGTATAGAAACAgcaaattataacttgacttcttgttgatca
>TCONS_00070932
CGTCTTCATTTTTAACCCGGAAAAAAATAACTCGAAGCGGTAGCTGTCTCGAAACCACTTCGAGTACAGAAAAGTCGGGAGAATGCTCTCACGTCTGAGCCGAATCTACCCTGCTTTGTCCCGGGTTCGTCTGAGCTCGGCGCTCGGGAGCCGCTTTGTATCTCAGACGCCGCAGTCTAGCGCGTCCGGAGCTTCGGTGCCTGCTGATCTGCGGCCCTTTGCTCCGCCGCTTCAGGACAGTCATGGACACGCAGAGGTCAGCCCGTTTGACAAGAATCCAGATTTTCACGGCTTCCATCATGACGAACCAATTGTGGATGAATGGAACATGAAATTGGCATTTTTCTTTTCCATTTCTTTGGTCATTGTTGTTGGAAGCACTTTCATTCACTATTTACCAGATCACGGCATGAGGCAGTGGGCTCGTCGGGAAGCTGAAAGGTTGATCGTACAGAGGGAAGCTGCTGGTCTTCCCGTCCTGACTGAAAATTACTACGACCCAAGCACCATTGTTCTCCCCTCTTCAGAAGAGTAGACAGCATATTGTCATTAATTATCCTGTTAATTTGTGTTGGACTGTACATTTGCCTCTCCTCAACTctattataataaaatgttataatatagCTGAATGTGGTATTTTCAGTTGCTGTTATTTTCATACTCATcattgataaaataaatgcactCTCAGTGAGCAGAATAAACTCAATtaatttaaagagaatgttaAAAACTGTAAAGCTTACAAACTTTTTAGCCATTCGGTGTGTGCATATGTCTTATGCAGAAGGCACATTAAAGAAATCagaaaaa

Function

symbol description
rhoaa Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including cytoskeleton organization; skeletal muscle satellite cell migration; and wound healing, spreading of cells. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be located in membrane. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and neuron projection. Human ortholog(s) of this gene implicated in breast carcinoma. Orthologous to human RHOA (ras homolog family member A).

GO:

id name namespace
GO:0016477 cell migration biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0007015 actin filament organization biological_process
GO:1902766 skeletal muscle satellite cell migration biological_process
GO:0030865 cortical cytoskeleton organization biological_process
GO:0044319 wound healing, spreading of cells biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0008360 regulation of cell shape biological_process
GO:0007163 establishment or maintenance of cell polarity biological_process
GO:0042995 cell projection cellular_component
GO:0043005 neuron projection cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005938 cell cortex cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0031982 vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0019901 protein kinase binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2150 Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including cytoskeleton organization; skeletal muscle satellite cell migration; and wound healing, spreading of cells. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be located in membrane. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and neuron projection. Human ortholog(s) of this gene implicated in breast carcinoma. Orthologous to human RHOA (ras homolog family member A).
ZDB-GENE-050309-25 Acts upstream of or within heart development and vasculature development. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be part of mitochondrial respiratory chain complex I. Is expressed in several structures, including alar plate midbrain region; digestive system; intestinal bulb primordium; optic tectum; and pectoral fin. Human ortholog(s) of this gene implicated in linear skin defects with multiple congenital anomalies 3 and nuclear type mitochondrial complex I deficiency 30. Orthologous to human NDUFB11 (NADH:ubiquinone oxidoreductase subunit B11).

Ensembl:

ensembl_id ENSDARG00000026845 ENSDARG00000043467

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070928 False 2194 mRNA 0.39 5 14170567 14179798
TCONS_00070929 False 747 lncRNA 0.46 4 14172076 14179774
TCONS_00070930 False 1444 mRNA 0.42 6 14172124 14183265
TCONS_00070931 False 807 mRNA 0.39 4 14173805 14179803
TCONS_00070932 True 816 mRNA 0.44 3 14180064 14184423

Neighbor

gene id symbol gene type direction distance location
XLOC_036289 si:dkey-6n6.1 coding downstream 19516 14130245 ~ 14151051 (-)
XLOC_036288 bgna coding downstream 43921 14104496 ~ 14126646 (-)
XLOC_036287 si:ch211-229n2.6 coding downstream 66250 14096167 ~ 14104317 (-)
XLOC_036286 BX248385.1 coding downstream 76051 14092794 ~ 14094516 (-)
XLOC_036285 si:ch211-229n2.7 coding downstream 78681 14085894 ~ 14091886 (-)
XLOC_036291 def6a coding upstream 872 14185295 ~ 14209852 (-)
XLOC_036292 sin3b coding upstream 27323 14211746 ~ 14239023 (-)
XLOC_036293 xpr1a coding upstream 60053 14244476 ~ 14375890 (-)
XLOC_036294 BX294388.2 coding upstream 229930 14414353 ~ 14452438 (-)
XLOC_036295 lhx4 coding upstream 269510 14453933 ~ 14484599 (-)
XLOC_036279 CT025854.2 non-coding downstream 292722 13877728 ~ 13877845 (-)
XLOC_036277 NA non-coding downstream 453990 13714942 ~ 13716577 (-)
XLOC_036263 NA non-coding downstream 864519 13302679 ~ 13306048 (-)
XLOC_036261 BX119975.1 non-coding downstream 931475 13238973 ~ 13239092 (-)
XLOC_036296 NA non-coding upstream 290346 14474769 ~ 14482457 (-)
XLOC_036297 NA non-coding upstream 306870 14491293 ~ 14495346 (-)
XLOC_036300 NA non-coding upstream 598791 14783214 ~ 14790721 (-)
XLOC_036301 NA non-coding upstream 893613 15078036 ~ 15081665 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_06074779_06076207 NDUFB11 coding CI01000010 null 6074427 ~ 6076280 (+)