cnpy4 (cnpy4)


Basic Information

Item Value
gene id cnpy4
gene name cnpy4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 45848186 ~ 45850007 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577999.2
AAAATAAATTGTGGAAATAGCGGGGCTTAGCCATATTTATGACTTTCTGGCTGTGTTAAGTGAATACCTTTTTGGGAAGCTTCAACTACTACACTGCGCCTGCGCCTTGCCATTTACGTGCTGTGAGTCTCTCAGAAAAATGCCGATGTGGCTTCTGTAAACGGATTTAGGGAATCAAGTTGGCGAAAAGTTGCAATGGAACTTTTCCTCTTGTGCCTTTTTTGGGTGTGCAGCTTCGCTATATCAGCCGAGGACGAAAGACTGCCCAATCGATGCGAAGTGTGTAAGTTCCTGACGGTGGAGCTCCAAGCAGCCTTGGAGAAGACGGGTCGGTCCAAGGAGGTTCTGGAGCTAGGAGCAGTGCTGGACACGGGTAAACGCAGACGCAAGATCAAATACAATACCTCTGAGACCCGTCTGACGGAGGCAGTGGATAACATCTGTGAGGGGATCCTACAGTACAGTGTCCATGCTGAGAGACCTGGCAGCCTCCGATACGCCAAGggtACCAGTCAGACCATGGCCACTCTGAAGAACCTGGTCCATAAGGGGGTGAAGGTGGAGTTGGGTCTGCCCTATGAACTCTGGGACGAACCCTCAGTGGAGGTGTCCGACATGAAGAAACAGTGTGAGACGATGCTAGAGCAGTATGAGGAGGTTGTGGAGGACTGGTACTTCCACCATCAGGAGGAGAGGCTGGAGCGCTTCCTGTGTGAGACACACATTCTCAAGACCTCCGAGcaagaatGTCTACAGGAGGTTTGGAAGGGTGACATGGGAAAGAAGGGATCCAAAGTGGAGGTAGCAAgcgaagaagagggagaagggaagactCACGACGCAGGAGAACTGTGAAATCATCCAAAATGGCGGAGTGAAAGTCTCCCTAACAGAACTACCCCTCTTTCTTTCCCAAATGGTCATACGATATTTGGAGTGGAACATAGTTAGAATGCATGGAGCAAAGTTACATTCAA

Function

symbol description
cnpy4 Predicted to enable signaling receptor binding activity. Predicted to be located in extracellular region. Orthologous to human CNPY4 (canopy FGF signaling regulator 4).

NR:

description
protein canopy homolog 4

GO: NA

KEGG:

id description
K22816 CNPY3_4; protein canopy 3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577999.2 True 977 mRNA 0.50 6 45848186 45850007

Neighbor

gene id symbol gene type direction distance location
LOC110500577 lsmd1 coding upstream 92818 45744610 ~ 45755368 (+)
LOC110500573 LOC106608761 coding upstream 145524 45688450 ~ 45702662 (+)
LOC110500572 LOC106608759 coding upstream 162137 45677661 ~ 45686049 (+)
si:dkey-19b23.7 LOC106608757 coding upstream 199937 45642861 ~ 45648249 (+)
si:dkey-38p12.3 LOC106608755 coding upstream 282444 45544516 ~ 45565742 (+)
LOC110500584 LOC106608769 coding downstream 19880 45869887 ~ 45888657 (+)
LOC110500588 LOC106608772 coding downstream 92150 45942157 ~ 45944870 (+)
LOC110500591 LOC106608776 coding downstream 166415 46016422 ~ 46020567 (+)
LOC110500595 LOC106608779 coding downstream 301434 46151441 ~ 46172393 (+)
LOC110500598 LOC106608783 coding downstream 351824 46201831 ~ 46210557 (+)
G1743112 NA non-coding upstream 54360 45785850 ~ 45793826 (+)
G1743100 NA non-coding upstream 118981 45728890 ~ 45729205 (+)
G1743099 chd3 non-coding upstream 119426 45728500 ~ 45728760 (+)
G1743098 LOC106608762 non-coding upstream 120225 45727476 ~ 45727961 (+)
G1743096 NA non-coding upstream 123149 45724672 ~ 45725037 (+)
G1743166 NA non-coding downstream 41890 45891897 ~ 45928329 (+)
G1743171 NA non-coding downstream 72499 45922506 ~ 45967783 (+)
G1743202 NA non-coding downstream 78819 45928826 ~ 45930122 (+)
G1743077 NA other upstream 138236 45707142 ~ 45709950 (+)
G1743043 NA other upstream 208444 45639296 ~ 45639742 (+)
LOC110500870 LOC106608752 other upstream 354234 45485247 ~ 45517233 (+)
fcer1g LOC106608748 other upstream 399499 45444361 ~ 45449712 (+)
G1744645 NA other downstream 1313897 47163904 ~ 47236823 (+)
G1746210 NA other downstream 2244760 48094767 ~ 48095119 (+)
G1746471 LOC106608612 other downstream 2475093 48325100 ~ 48363926 (+)
G1747255 NA other downstream 3127319 48977326 ~ 48977758 (+)
G1747814 LOC106606817 other downstream 3595832 49445839 ~ 49446626 (+)

Expression


Co-expression Network