LOC110500588 (LOC106608772)


Basic Information

Item Value
gene id LOC110500588
gene name LOC106608772
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 45942157 ~ 45944870 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578003.2
tactgttttgctttgtcattatgggatatcaattttagaatacagCTATAAGATAACAAAATGTGTAttaagtcaagggctctgaatactttcccaatgcactgtatagtAAGTATGTGGTCGTAATTCTGCTAAAACTGCACTAGATGGCAACGTCTCAACTGTTTTAGGATCGTGCATAAAAAGAGCCTTGCACGCCACTGAACGTCACACATGTTCTTCCGCTGTTTGTCCtaatttgaattgaatttaaaAAGTGACTGTATCGAATTTATTGTATTGGAATATTTGTTATGTTTATTGATAAAGTAAATTATGTATGTGGTAACATAAAGGGCCTGTGCCCCTCAGAGTAAAAGTCCTATCCTGTATCAGAGCAGCACATGTTGGTGGAGACATTTTATTGTTTAGCATGAGTTTTGGTTATTTAGATACCCAAAAGCATAGTTTCCAGTTGAAGATGGGAAATTTACTATATTGAAATGTGGGTATTAGGCACTGTGCACACTCGCTCACTTTGTGATTGACAAACagccagacagagaaagaggaggggggtgggggtgagtAAGAGATCATTCTCTCACTCAGACTAGACCATTGCATTGCATGTCTTGGAAGTACTCAGATTGATGAGATGATCACTCAATTTTTACACGTGTTGGAAACTATGAGAAGAAAGAGACCACGATGAAAAAATCCAATACCCCAAATCCAGTATCAAAAGAGGGATAATGTCAATACCAAACGGGACTGGAGAAACTGGCGCAAAGGACTACACCTATGTACGGGTTTGTGCGTCGACCGTCTCCTTCATAATATTGGCGTTCTTCAACATCGTCATTAACTGGACTATAGTGCGCGAGGAGCGACTTCGGAGCCATGCGCGCTTTGTGTTAGTTTTTCACCTGTTGATGTCAGCTCTGGTGTACTTTGGGATGTGCTCTGTTTTCTACCTCCAGATTTACCTCGGCGCCAGGCTGGTGGCATCCATCTGTGTGGCCATGGTAACTGTCCTAATCACCAGCGCGTCCAATATACTCCTGACTCTCACTGCTATGGCGCTGGACCGTTATTTTGCTGTCTGTCACCCTATGAAGTACAGTTCTGTCTGGCATTGGCCCTGGTTAGTTGGACTACTGACGTGGGGGCTCGCGCTGGTTATTCCCCTCACTCTGCTCCCCAAGACGGAGCTGGACGCAACTGGTCCAAATGGGGAATGTGGACGGGAACAGCTGAAGAAAGGTGAACTGAAAAAAATCTTGCTGATATCTGTGTGTACGATATTGATTCTGTACAGTTATGTAAGGATACTGTTTGAGGGGCGAAGGTTGGGGGTGATAAATCGACGCAATAGTGTCGGATGCAAGACCATCGCCCTGCACTTTACTCAACTCGCCGTGTACATCCTCCCCAACTTTGTGCTAATAGTTATCCAGAAACAAGAACACCTTCAGTCGGGGACCAAAGAACTGTCAGCGGTGGTGAGCTTTGCCTTCTTTAGTTTGGCGCAGTGCATAGCACCAATCGTCTACGGTTTGCGTAAAGAGGAACTCTTGGAGCAGGTGCATCGCCGGTTCCCTTGTTGTTCCCGCCACCTGAAAAGCGTTCTGGAGTGGACCGTGCGTGCCACGACGCCTCGTCTGCATCCGCATCCACAGCCACGGGAAAGAACATTGACATCCCAGACACTCATCTCACTGGAGCCTCCACAGACACCAGTATAAGGGAAGAGGGAGCCCTCACTACTAACTCAACTACCCCTGTAACAGACCCATCAGTATGTCTCCAGTGCTCCATAGGCTGGGCTAAATACGTTTTGTACCAGCCTGATACTGCCACCCAAATGCCATGGAGACGCTGGTGGAATGGAGGGTGTAGCAACTAGACATCACAACACATTTGGGAGCATATTGTATATCCATACAGTGTGGATTCACCCTCTTTTGCTGATTCATTCATACAGTACTTGAATATCCAGCATCTGCACAAAGCTGTGAAAGTGCTTCTGTTCTACCCAGGATGTAGTGACTCTATAGGAATGGGTATCGCTATGAACATACCGGCCCCAGACCTGTATTATGTTAACTGTACAGAGTCAGAGAAGAGTCCAACGAGGTTTTGACTAATCGGACTGAAAATGTACCGTACAAaacagtggcacagccagagaTTTGTTGATGGGTGGGccaaaaatatacactaccgttcaaaagtttggggtcacttagaaatgtccttgcttttgaaagcaattaaaataacccacaaaacacccgtctcaacgtc

Function

NR:

description
probable G-protein coupled receptor 148 isoform X1

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578003.2 True 2289 mRNA 0.45 2 45942157 45944870

Neighbor

gene id symbol gene type direction distance location
LOC110500584 LOC106608769 coding upstream 53500 45869887 ~ 45888657 (+)
cnpy4 cnpy4 coding upstream 92150 45848186 ~ 45850007 (+)
LOC110500577 lsmd1 coding upstream 186789 45744610 ~ 45755368 (+)
LOC110500573 LOC106608761 coding upstream 239495 45688450 ~ 45702662 (+)
LOC110500572 LOC106608759 coding upstream 256108 45677661 ~ 45686049 (+)
LOC110500591 LOC106608776 coding downstream 71552 46016422 ~ 46020567 (+)
LOC110500595 LOC106608779 coding downstream 206571 46151441 ~ 46172393 (+)
LOC110500598 LOC106608783 coding downstream 256961 46201831 ~ 46210557 (+)
LOC110500597 LOC106608784 coding downstream 271747 46216617 ~ 46266922 (+)
LOC118936379 LOC106608786 coding downstream 273679 46218549 ~ 46222191 (+)
G1743202 NA non-coding upstream 12035 45928826 ~ 45930122 (+)
G1743166 NA non-coding upstream 13828 45891897 ~ 45928329 (+)
G1743112 NA non-coding upstream 148331 45785850 ~ 45793826 (+)
G1743100 NA non-coding upstream 212952 45728890 ~ 45729205 (+)
G1743099 chd3 non-coding upstream 213397 45728500 ~ 45728760 (+)
G1743648 NA non-coding downstream 238430 46183300 ~ 46183714 (+)
G1743654 NA non-coding downstream 246345 46191215 ~ 46192309 (+)
G1743660 NA non-coding downstream 253629 46198499 ~ 46198707 (+)
G1743077 NA other upstream 232207 45707142 ~ 45709950 (+)
G1743043 NA other upstream 302415 45639296 ~ 45639742 (+)
si:dkey-38p12.3 LOC106608755 other upstream 386568 45544516 ~ 45565742 (+)
LOC110500870 LOC106608752 other upstream 448205 45485247 ~ 45517233 (+)
fcer1g LOC106608748 other upstream 493470 45444361 ~ 45449712 (+)
G1744645 NA other downstream 1219034 47163904 ~ 47236823 (+)
G1746210 NA other downstream 2149897 48094767 ~ 48095119 (+)
G1746471 LOC106608612 other downstream 2380230 48325100 ~ 48363926 (+)
G1747255 NA other downstream 3032456 48977326 ~ 48977758 (+)
G1747814 LOC106606817 other downstream 3500969 49445839 ~ 49446626 (+)

Expression


Co-expression Network