XLOC_036308 (agbl4)


Basic Information

Item Value
gene id XLOC_036308
gene name agbl4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 15633454 ~ 15991801 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070955
gtcAGTTCAGAGTCATAATAACTCTTTTTCATATTGCCCATTTCCCTAATTGAAGTTAAAAAATTAAGGGTAAATCCACTCTATGTAAGGGTCAAAATCACTTATCTCTCTTGTAGTTCTTGGTTTATCAGCACTTACTAAATGACTATATTAACACCTGACATTTCCTACGCTTTGAACGCTTTATAGGGCTACACATAACATTAGCTGGTGCGGTGTGAAAAGACATCCGTGTGGCTGGGGGAGCTGTGCCGTTTTCGTGCTACGTCAAATCCTTCCTCTCGCGCGCAGTACGCCGTCGTCTTGGAAACGCACCTTCAGCGTCGCCAGCCAGTGGTTGTTATGAGAGGATGATGGAAGAAAACAGCAGAGAACATCTCGATACTGATAATGAAGCAGGAGGAGAGGATGCTCTTGTGGGGAACGTAAACAAACTGATGGTCACTCCTCCAGGATACACCGGACCACCCAAGAAAGGCCATGTCATTTTCGATGCGTGCTTTGAGAGTGGTAACCTGGGTCGTGTTGACTACATCAGCGAATTTGAGTTTGATCTGTTCATCAGGCCTGACACGTGTAACCCGCGCTTCAGAGTGTGGTTCAACTTCACGGTGGAAAACGTTCGGGAGACTCAGAGAGTGATTTTCAACATTGTGAACTTCAGCAAGACCAAGAGCCTGTACAGAGATGGGATGTCCCCCGTGGTGAAGTCGACCAGCCGGCCTAAATGGCAAAGACTTCCAGCCAAGAATGTGTATTACTACCGCTGCCCTGATCATCGGAGGAACTACGTGATGTCTTTCGCCTTCTGTTTCGACCGAGAGGATGATGTTTATCAGTTTGCATACTGCTACCCCTACACCTATTCGCGTCTGCAACATTACCTGGCCAGCCTGGAGCGCAGAAACCTCGATTACCTGCAGCGAGAACAGCTGGGCCTCAGTGTGGTTAGTCAATGCATGTTTCTACACCACATGTGTTTTAGCGCCTGTTTTTTCAGgtgtttctgtcattttttattatgttag

Function

symbol description
agbl4 Is expressed in Kupffer's vesicle; eye; otic vesicle; peripheral olfactory organ; and pronephros. Orthologous to human AGBL4 (AGBL carboxypeptidase 4).

GO: NA

KEGG:

id description
ko04361 Axon regeneration
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-081104-437 Is expressed in Kupffer's vesicle; eye; otic vesicle; peripheral olfactory organ; and pronephros. Orthologous to human AGBL4 (AGBL carboxypeptidase 4).

Ensembl:

ensembl_id ENSDARG00000068050

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070955 True 1028 mRNA 0.47 5 15633454 15991801

Neighbor

gene id symbol gene type direction distance location
XLOC_036307 FP017128.1 coding downstream 607 15632732 ~ 15632847 (-)
XLOC_036306 bend5 coding downstream 112547 15502785 ~ 15520907 (-)
XLOC_036305 agbl4 coding downstream 234694 15311289 ~ 15398760 (-)
XLOC_036304 spata6 coding downstream 327926 15287424 ~ 15305528 (-)
XLOC_036303 NA coding downstream 381985 15251183 ~ 15251469 (-)
XLOC_036310 CR931780.1 coding upstream 70371 16062172 ~ 16064410 (-)
XLOC_036311 NA coding upstream 226453 16218254 ~ 16254661 (-)
XLOC_036312 dmrta2 coding upstream 265419 16257220 ~ 16259063 (-)
XLOC_036313 NA coding upstream 272129 16263930 ~ 16268947 (-)
XLOC_036314 faf1 coding upstream 282977 16274778 ~ 16406440 (-)
XLOC_036301 NA non-coding downstream 551789 15078036 ~ 15081665 (-)
XLOC_036300 NA non-coding downstream 842733 14783214 ~ 14790721 (-)
XLOC_036297 NA non-coding downstream 1138108 14491293 ~ 14495346 (-)
XLOC_036317 CU467861.7 non-coding upstream 574036 16565837 ~ 16566479 (-)
XLOC_036318 NA non-coding upstream 574747 16566548 ~ 16584612 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G64564 NA unknown CI01000010 null 5049155 ~ 5242926 (-)