LOC110500591 (LOC106608776)


Basic Information

Item Value
gene id LOC110500591
gene name LOC106608776
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 46016422 ~ 46020567 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578009.2
GTTAACAAGTGATGACCCTATGTGGGAGTTGCCTCTCTCTTTGATGACATCACTGTATTTTAAAAGATTAGTCATATGTTAATAACAGTATGTTTGGCAAGCTGTCAAGTGAGATCCCTACCTCCCACGCACTTCCCCCTCTAAAAAATCAAAACACACTGTAGCCTCATAGTCTCATCATTCCGATAGTTCATTCTCGTTGAATGAAACAGCACCCAAAGAGAAACAAAAATGTGTTCAGAACATGAGTGCGGAATTTGTTACAGAAGCTACAACACGGATCGTCGGTGTCCTCGTGAGTTACAGTGTAAGCACATCTTTTGTGAGAGCTGTATCGTGACTCTTTCTCGACCCTCGGTACGTGAAGTGGAATCCAGGAAGGAATGTTCGCGGCAGGACAAGACAATTGTTTGCCCACTGTGCCGGTACACAACGTCGGTCTCGGGTAAAGTGAGGGCAGCGCTTCGGGTAGACGAAGGTATTCTTGAGCGCATGATGTCATCTGGCGTACTAAGCATGACAGACGACGAGGAGGATCGAGAAGATGATGAGACTTCTCATGAGAACTCAGCCGAGGAAAGGGACTCCTCTTCGGGTTCCGTAGTTGGAAGGTTCCGCCGTTCGCTGAGGCGCGTCTGGGGCAAATTAACTCGGAATGATGACCAACGGAGAGCGGATTGTATGACTGATGAGGACCTACGAGACCTTGCCATGATGTCATGCTACATCATTTGATGAGGACTCCGTTGGAAAAAAGTAATCAGCTGCTGCACCTGATTGATCAGAGAGAGGGCGTTGCTGTCCACGAGCCAACGCTACAGTATTTAGAATGGAGAAGACTGGCGGGTCCAGTTGGAAGTTGGAGCAAGCAGGAATATAGCCTCTTCGCACCGGGAGACCTGTACACGTTGATCTCCCGTTGCTGAAGTTGACATCCCTTACCCCGTATAACATATTTACCAGCCCTCTGGTATATTTACGAGAAACTTTACCTGTCACTGAAGGCAATTCTATAATCCTGTTTACCATTTGGTACGGGCTATACAATGTGTGAACTATGGTAAAAATGGTATAAATATACGTTTTCTGAAGCTCACTCCCTAGTCCCCATACAGCCTACTAGTTTTCCGTGATTTTTCCATGTGATCCTAGATGGCAGCACACCATTAGGAAGATAGGATGTGAATTTGGTTAATTTGAGGAACGTTGgatataaatgtttgtttttttcacacATTGTAAAAATACATTTGGTCAATTTGTGGAAAGTTGGATATAAAAGTagtttttttctccacacatgtAAGAATAAACTAGCAGGAATATAGCtttatttacacaggcagcccaatttggagcttttttttttactaattggtcttttaaccaatcacatcagatcttttccaGAGTCAAAATTAGTCAAAATAGCCATTATTGGGTaaacaaaatatcagaattgggctgcctgtgtaaatgcagcctatgTATTCTATAATAGCCAACTAGGCCTAAGTGTCGATTTTTTCTCACTTGCATGTCATAATTTGGTGGTGACCAAACATAAACACAATGGTAAAACAGAATTGTAAAGGCTGAAAATGACAAGACCATATAGGCTTTTTCTCTGAACCCATTTGGCTACCAAATGAAATGTTTTTGTATGAAATTGTCTTTGGTGCTTTGAAGTAgcctattttatttaacctttatttaacttggcaagtcagttaagaacaaattcttatttacaatgatggcctaccccggccaaactctatGACTTTCCATTTCCAAAGATTAGAATAAGTATTTAATATTGTTGGTGCTAAGTTCACAAGCACACACTTAATATAATTCAATATGTAATTCAGTGTATTTACTTCATTCACTTTCATTGATTGTGCACTTTTTTTAGGCCTATGTTTTGTTGTAATAAAAGCATATCGGCATA
>TU1996337
GGGTaaacaaaatatcagaattgggctgcctgtgtaaatgcagcctatgTATTCTATAATAGCCAACTAGGCCTAAGTGTCGATTTTTTCTCACTTGCATGTCATAATTTGGTGGTGACCAAACATAAACACAATGGTAAAACAGAATTGTAAAGGCTGAAAATGACAAGACCATATAGGCTTTTTCTCTGAACCCATTTGGCTACCAAATGAAATGTTTTTGTATGAAATTGTCTTTGGTGCTTTGAAGTAgcctattttatttaacctttatttaacttggcaagtcagttaaatggcctaccccggccaaactctatGACTTTCCATTTCCAAAGATTAGAATAAGTATTTAATATTGTTGGTGCTAAGTTCACAAGCACACACTTAATATAATTCAATATGTAATTCAGTGTATTTACTTCATTCACTTTCATTGATTGTGCACTTTTTTTAGGC

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578009.2 False 1954 mRNA 0.41 2 46016422 46020567
TU1996337 True 459 lncRNA 0.34 2 46020053 46020533

Neighbor

gene id symbol gene type direction distance location
LOC110500588 LOC106608772 coding upstream 71552 45942157 ~ 45944870 (+)
LOC110500584 LOC106608769 coding upstream 127765 45869887 ~ 45888657 (+)
cnpy4 cnpy4 coding upstream 166415 45848186 ~ 45850007 (+)
LOC110500577 lsmd1 coding upstream 261054 45744610 ~ 45755368 (+)
LOC110500573 LOC106608761 coding upstream 313760 45688450 ~ 45702662 (+)
LOC110500595 LOC106608779 coding downstream 130874 46151441 ~ 46172393 (+)
LOC110500598 LOC106608783 coding downstream 181264 46201831 ~ 46210557 (+)
LOC110500597 LOC106608784 coding downstream 196050 46216617 ~ 46266922 (+)
LOC118936379 LOC106608786 coding downstream 197982 46218549 ~ 46222191 (+)
LOC110500876 LOC106577625 coding downstream 1013535 47034102 ~ 47113062 (+)
G1743171 NA non-coding upstream 48639 45922506 ~ 45967783 (+)
G1743202 NA non-coding upstream 86300 45928826 ~ 45930122 (+)
G1743166 NA non-coding upstream 88093 45891897 ~ 45928329 (+)
G1743112 NA non-coding upstream 222596 45785850 ~ 45793826 (+)
G1743100 NA non-coding upstream 287217 45728890 ~ 45729205 (+)
G1743648 NA non-coding downstream 162733 46183300 ~ 46183714 (+)
G1743654 NA non-coding downstream 170648 46191215 ~ 46192309 (+)
G1743660 NA non-coding downstream 177932 46198499 ~ 46198707 (+)
G1743077 NA other upstream 306472 45707142 ~ 45709950 (+)
G1743043 NA other upstream 376680 45639296 ~ 45639742 (+)
si:dkey-38p12.3 LOC106608755 other upstream 460833 45544516 ~ 45565742 (+)
LOC110500870 LOC106608752 other upstream 522470 45485247 ~ 45517233 (+)
fcer1g LOC106608748 other upstream 567735 45444361 ~ 45449712 (+)
G1744645 NA other downstream 1143337 47163904 ~ 47236823 (+)
G1746210 NA other downstream 2074200 48094767 ~ 48095119 (+)
G1746471 LOC106608612 other downstream 2304533 48325100 ~ 48363926 (+)
G1747255 NA other downstream 2956759 48977326 ~ 48977758 (+)
G1747814 LOC106606817 other downstream 3425272 49445839 ~ 49446626 (+)

Expression


Co-expression Network