LOC110500625 (cj011)


Basic Information

Item Value
gene id LOC110500625
gene name cj011
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 49606099 ~ 49609714 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578099.2
ggagggggttaATGGCCAATGTGATTATCTCGATCTTGTGATCCAGAGCTGTCCCATGAATGAGTGCCTTTTATGTGCAGTGAGCAGACTGCATCTCAGCTGGTAGACCTGCCTGAAAACCACCTCACTACACATATTGGGATTACGGCGCCATGTATCTGAATACCCTGGTAATCTGGCTAGTTGGCACCGAGGAGTGAGGTGTTCGGAGGCTGTAGCTCGGCTTCTTAGCCATGGAGACAGAGGGGCTGCCTGCTGCACCAGGCCAGTATAGCCAGCCCGGTCAGCCAGGCCCAGTGCTGGGGCTTCGGAGTCTCTCCTTTGCCTACCAGGGCTTGCTAGAGATCCCCTACGAAGTCATACTAGCCCAGCAACACACCCTGGAAGTGTTGGACCTCAGCTACAACCTGCTGGAGGACCCAGCTCTCCTGGGTGAACTGGAGCAGCTCAGCACTCTGATCCTGGACTGCAACATCTATTCGTCCCACGTCAAGTTCCCCTACATGCCAAGCGTCACCACCGTGTGGATCAACAAGAACAAGATCAGCAACCTGCCCATCTTCGTGGAGGAGATCCGCCGCAAGTTTCCCAACATCAAGATCCTCAGCATGATGAACAACGAGGCAGCACCCAGCTACTTCAATGGAGGGAGTCTGCCCCAGTACATAGACTACAGGCAGTATGTGATCAGTCAGATCCCAAGCCTGACGATCCTGGATGACACTGAGGTtctggggaaagagagagcgcaGGCTAAGAAGACCTATAGGATGCAGAGGACCAGGGAAGGCAGCAAAAGGAGGAAGGAGCTCCATCGTTGAACCCTCCTTAATACTGCTACCTATATAACTGATCTGAAGACGTATCAAGATGAGCAAATCATTCATTCTCGCGATAAATGATTAGTTCAAGCAAGCTAGCACCAGTTGTAAATATATTGTCAACATGTTATGTGTTCAAATGAAAATGGGATACTTTTTGTTATGATTTTCTATGGACATGGGGAATTTCCCTTATCATGAAAGAAATGAAGGGAAGATATTCCATTTAAATGGTGAATGAAGATGTTTTGCAAAAGTAAATAATTCCATGTCACACTCAAA
>XM_021578097.2
gagggggttaATGGCCAATGTGATTATCTCGATCTTGTGATCCAGAGCTGTCCCATGAATGAGTGCCTTTTATGTGCAGTGAGCAGACTGCATCTCAGCTGGTAGACCTGCCTGAAAACCACCTCACTACACATATTGGGATTACGGCGCCATGTATCTGAATACCCTGGTAATCTGGCTAGTTGGCACCGAGGAGTGAGGTGTTCGGAGGCTGTAGCTCGGCTTCTTAGCCATGGAGACAGAGGGGCTGCCTGCTGCACCAGGCCAGTATAGCCAGCCCGGTCAGCCAGGCCCAGTGCTGGGGCTTCGGAGTCTCTCCTTTGCCTACCAGGGCTTGCTAGAGATCCCCTACGAAGTCATACTAGCCCAGCAACACACCCTGGAAGTGTTGGACCTCAGCTACAACCTGCTGGAGGAGAGCCCAGCTCTCCTGGGTGAACTGGAGCAGCTCAGCACTCTGATCCTGGACTGCAACATCTATTCGTCCCACGTCAAGTTCCCCTACATGCCAAGCGTCACCACCGTGTGGATCAACAAGAACAAGATCAGCAACCTGCCCATCTTCGTGGAGGAGATCCGCCGCAAGTTTCCCAACATCAAGATCCTCAGCATGATGAACAACGAGGCAGCACCCAGCTACTTCAATGGAGGGAGTCTGCCCCAGTACATAGACTACAGGCAGTATGTGATCAGTCAGATCCCAAGCCTGACGATCCTGGATGACACTGAGGTtctggggaaagagagagcgcaGGCTAAGAAGACCTATAGGATGCAGAGGACCAGGGAAGGCAGCAAAAGGAGGAAGGAGCTCCATCGTTGAACCCTCCTTAATACTGCTACCTATATAACTGATCTGAAGACGTATCAAGATGAGCAAATCATTCATTCTCGCGATAAATGATTAGTTCAAGCAAGCTAGCACCAGTTGTAAATATATTGTCAACATGTTATGTGTTCAAATGAAAATGGGATACTTTTTGTTATGATTTTCTATGGACATGGGGAATTTCCCTTATCATGAAAGAAATGAAGGGAAGATATTCCATTTAAATGGTGAATGAAGATGTTTTGCAAAAGTAAATAATTCCATGTCACACTCAAA
>XM_021578096.2
ATCTCGATCTTGTGATCCAGAGCTGTCCCATGAATGAGTGCCTTTTATGTGCAGTGAGCAGACTGCATCTCAGCTGGTAGACCTGCCTGAAAACCACCTCACTACACATATTGGGTGGATTTCAGGGATTACGGCGCCATGTATCTGAATACCCTGGTAATCTGGCTAGTTGGCACCGAGGAGTGAGGTGTTCGGAGGCTGTAGCTCGGCTTCTTAGCCATGGAGACAGAGGGGCTGCCTGCTGCACCAGGCCAGTATAGCCAGCCCGGTCAGCCAGGCCCAGTGCTGGGGCTTCGGAGTCTCTCCTTTGCCTACCAGGGCTTGCTAGAGATCCCCTACGAAGTCATACTAGCCCAGCAACACACCCTGGAAGTGTTGGACCTCAGCTACAACCTGCTGGAGGAGAGCCCAGCTCTCCTGGGTGAACTGGAGCAGCTCAGCACTCTGATCCTGGACTGCAACATCTATTCGTCCCACGTCAAGTTCCCCTACATGCCAAGCGTCACCACCGTGTGGATCAACAAGAACAAGATCAGCAACCTGCCCATCTTCGTGGAGGAGATCCGCCGCAAGTTTCCCAACATCAAGATCCTCAGCATGATGAACAACGAGGCAGCACCCAGCTACTTCAATGGAGGGAGTCTGCCCCAGTACATAGACTACAGGCAGTATGTGATCAGTCAGATCCCAAGCCTGACGATCCTGGATGACACTGAGGTtctggggaaagagagagcgcaGGCTAAGAAGACCTATAGGATGCAGAGGACCAGGGAAGGCAGCAAAAGGAGGAAGGAGCTCCATCGTTGAACCCTCCTTAATACTGCTACCTATATAACTGATCTGAAGACGTATCAAGATGAGCAAATCATTCATTCTCGCGATAAATGATTAGTTCAAGCAAGCTAGCACCAGTTGTAAATATATTGTCAACATGTTATGTGTTCAAATGAAAATGGGATACTTTTTGTTATGATTTTCTATGGACATGGGGAATTTCCCTTATCATGAAAGAAATGAAGGGAAGATATTCCATTTAAATGGTGAATGAAGATGTTTTGCAAAAGTAAATAATTCCATGTCACACTCAAA
>XM_021578098.2
TCTCGATCTTGTGATCCAGAGCTGTCCCATGAATGAGTGCCTTTTATGTGCAGTGAGCAGACTGCATCTCAGCTGGTAGACCTGCCTGAAAACCACCTCACTACACATATTGGGTGGATTTCAGGGATTACGGCGCCATGTATCTGAATACCCTGGTAATCTGGCTAGTTGGCACCGAGGAGTGAGGTGTTCGGAGGCTGTAGCTCGGCTTCTTAGCCATGGAGACAGAGGGGCTGCCTGCTGCACCAGGCCAGTATAGCCAGCCCGGTCAGCCAGGCCCAGTGCTGGGGCTTCGGAGTCTCTCCTTTGCCTACCAGGGCTTGCTAGAGATCCCCTACGAAGTCATACTAGCCCAGCAACACACCCTGGAAGTGTTGGACCTCAGCTACAACCTGCTGGAGGACCCAGCTCTCCTGGGTGAACTGGAGCAGCTCAGCACTCTGATCCTGGACTGCAACATCTATTCGTCCCACGTCAAGTTCCCCTACATGCCAAGCGTCACCACCGTGTGGATCAACAAGAACAAGATCAGCAACCTGCCCATCTTCGTGGAGGAGATCCGCCGCAAGTTTCCCAACATCAAGATCCTCAGCATGATGAACAACGAGGCAGCACCCAGCTACTTCAATGGAGGGAGTCTGCCCCAGTACATAGACTACAGGCAGTATGTGATCAGTCAGATCCCAAGCCTGACGATCCTGGATGACACTGAGGTtctggggaaagagagagcgcaGGCTAAGAAGACCTATAGGATGCAGAGGACCAGGGAAGGCAGCAAAAGGAGGAAGGAGCTCCATCGTTGAACCCTCCTTAATACTGCTACCTATATAACTGATCTGAAGACGTATCAAGATGAGCAAATCATTCATTCTCGCGATAAATGATTAGTTCAAGCAAGCTAGCACCAGTTGTAAATATATTGTCAACATGTTATGTGTTCAAATGAAAATGGGATACTTTTTGTTATGATTTTCTATGGACATGGGGAATTTCCCTTATCATGAAAGAAATGAAGGGAAGATATTCCATTTAAATGGTGAATGAAGATGTTTTGCAAAAGTAAATAATTCCATGTCACACTCAAA
>TU2001255
CATGAATGAGTGCCTTTTATGTGCAGTGAGCAGACTGCATCTCAGCTGGTAGACCTGCCTGAAAACCACCTCACTACACATATTGGGATTACGGCGCCATGTATCTGAATACCCTGGTAATCTGGCTAGTTGGCACCGAGGAGTGAGGTGTTCGGAGGCTGTAGCTCGGCTTCTTAGCCATGGAGACAGAGGGGCTGCCTGCTGCACCAGGCCAGTATAGCCAGCCCGGTCAGCCAGGCCCAGTGCTGGGGCTTCGGAGTCTCTCCTTTGCCTACCAGGGCTTGCTAGAGATCCCCTACGAAGTCATACTAGCCCAGCAACACACCCTGGAAGTGTTGGACCTCAGCTACAACCTGCTGGAGGAAGCCCAGCTCTCCTGGGTGAACTGGAGCAGCTCAGCACTCTGATCCTGGACTGCAACATCTATTCGTCCCACGTCAAGTTCCCCTACATGCCAAGCGTCACCACCGTGTGGATCAACAAGAACAAGATCAGCAACCTGCCCATCTTCGTGGAGGAGATCCGCCGCAAGTTTCCCAACATCAAGATCCTCAGCATGATGAACAACGAGGCAGCACCCAGCTACTTCAATGGAGGGAGTCTGCCCCAGTACATAGACTACAGGCAGTATGTGATCAGTCAGATCCCAAGCCTGACGATCCTGGATGACACTGAGGTtctggggaaagagagagcgcaGGCTAAGAAGACCTATAGGATGCAGAGGACCAGGGAAGGCAGCAAAAGGAGGAAGGAGCTCCATCGTTGAACCCTCCTTAATACTGCTACCTATATAACTGATCTGAAGACGTATCAAGATGAGCAAATCATTCATTCTCGCGATAAATGATTAGTTCAAGCAAGCTAGCACCAGTTGTAAATATATTGTCAACATGTTATGTGTTCAAATGAAAATG
>TU2001256
CATGAATGAGTGCCTTTTATGTGCAGTGAGCAGACTGCATCTCAGCTGGTAGACCTGCCTGAAAACCACCTCACTACACATATTGGTGAGTTAAGTCAAAAAAATGATTATTTGTATATAGATATGTTTATAATGTgctgtatgttttgtttttaaatgctGTTTAAGTTGTTTGTCTGTTTAAGTTGACCTGTTTAATATTAATGGTCCTAGGTATCTGACAAGTTTAAGAGACGGCTCTGCGGTCTTCGTATTATCCTTGAGCGATGTAGATTGTTTTTTTTAAGAGTTGTTGACCATACAAGCATAGTTTTTTTATATGATGTTTTCGATGGCAAGATTTATAGATGTTTGTAGAACCAGGCGGATCTGCCTTGATTACCTTCAGTTGACATTAAATGCACAATAAATtaccagacactcttatccagagcgatttacaggagaaattagggttacgtgccttgctcaagggcacattgacagattttttttcacctagttggcttgggtattcaaaccagcaacttgTTGTTTACTGGCACAAGGCTCTTaattactaggctacctgccgctgagTAAATTACATGCACAGGCATTTGGTCTGGTTTTCTAACTAACACAGTGGATCATTCATAGTGTTTTTTTGACCTCCAATACCTCAGCCTGGATCTAAGGATGAAATGACTATAATAACACATGAGAACAGGCACTGCTGTGGACCTACTGTATGCTACAAATGAAGGTCATTAGGTGAACTGAATGAAAACTGAATCACCTCGGTGATGGTGAAGTACTGTATTGTATTCCTCTAGCCAGAACACGTTTGGATTCTGTTAGTGTAGTTTTTTTGACCGATGCTGTTCTTCACTCATGTCAACAATCCAAAGTTCACGATGTACCAACACGTCTCAAAGGTGACAAATTAGGGGAAATTGTTGAGGTATTCAATGATGGTCCTGAAGGGCTACTGCAGCTGCTGCTTTACATTCAATCCCGCTGATCAGGGACTAAGTACtaattgaaatcatttcaaatactttagctgtacttgattgagcttgcctgttgcaatggaaccaatagaaatctcccaaaagtgcaaaccccaaCCAGATGGCACTCCTGGCAGGCTGAAGCAAAGctgaaagtatttgaaagatttcaaatagtatatTAACCCAGGTTTGCCTGAGTAATAACGCTTTTGTCAGTCAGTTATATGACCTGTACTATTCAGAAAACATTTGGGTCCGGAATGAGCATTTTGGCTTCTTGCTTATGTTTAACTCCTAGAAAATGTTTTTTGGTAGTAAGTACTCTCAATAACTAAACCATTATGCCCTTGTTTTGATTTGAGGGTGGATTTCAGGGATTACGGCGCCATGTATCTGAATACCCTGGTAATCTGGCTAGTTGGCACCGAGGAGTGAGGTGTTCGGAGGCTGTAGCTCGGCTTCTTAGCCATGGAGACAGAGGGGCTGCCTGCTGCACCAGGCCAGTATAGCCAGCCCGGTCAGCCAGGCCCAGTGCTGGGGCTTCGGAGTCTCTCCTTTGCCTACCAGGGCTTGCTAGAGATCCCCTACGAAGTCATACTAGCCCAGCAACACACCCTGGAAGTGTTGGACCTCAGCTACAACCTGCTGGAGGAAGCCCAGCTCTCCTGGGTGAACTGGAGCAGCTCAGCACTCTGATCCTGGACTGCAACATCTATTCGTCCCACGTCAAGTTCCCCTACATGCCAAGCGTCACCACCGTGTGGATCAACAAGAACAAGATCAGCAACCTGCCCATCTTCGTGGAGGAGATCCGCCGCAAGTTTCCCAACATCAAGATCCTCAGCATGATGAACAACGAGGCAGCACCCAGCTACTTCAATGGAGGGAGTCTGCCCCAGTACATAGACTACAGGCAGTATGTGATCAGTCAGATCCCAAGCCTGACGATCCTGGATGACACTGAGGTtctggggaaagagagagcgcaGGCTAAGAAGACCTATAGGATGCAGAGGACCAGGGAAGGCAGCAAAAGGAGGAAGGAGCTCCATCGTTGAACCCTCCTTAATACTGCTACCTATATAACTGATCTGAAGACGTATCAAGATGAGCAAATCATTCATTCTCGCGATAAATGATTAGTTCAAGCAAGCTAGCACCAGTTGTAAATATATTGTCAACATGTTATGTGTTCAAATGAAAATG

Function

NR:

description
U2 small nuclear ribonucleoprotein A'-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578099.2 False 1103 mRNA 0.49 5 49606099 49609714
XM_021578097.2 False 1105 mRNA 0.49 5 49606100 49609714
XM_021578096.2 False 1092 mRNA 0.49 5 49606125 49609714
XM_021578098.2 False 1088 mRNA 0.49 5 49606126 49609714
TU2001255 False 917 TUCP 0.51 5 49606153 49609580
TU2001256 True 2204 TUCP 0.44 4 49606153 49609580

Neighbor

gene id symbol gene type direction distance location
LOC110500624 LOC106608622 coding upstream 222 49593386 ~ 49605877 (+)
LOC110500610 LOC106608613 coding upstream 1191965 48382854 ~ 48414134 (+)
LOC110500605 LOC106608606 coding upstream 1648082 47368664 ~ 47958017 (+)
LOC110500876 LOC106577625 coding upstream 2493037 47034102 ~ 47113062 (+)
LOC110500597 LOC106608784 coding upstream 3339177 46216617 ~ 46266922 (+)
aco1 aco1 coding downstream 1537 49611251 ~ 49623432 (+)
LOC110500627 LOC106608625 coding downstream 44978 49654692 ~ 49662658 (+)
LOC110500628 LOC106608626 coding downstream 70954 49680668 ~ 49772757 (+)
LOC110500629 LOC106608629 coding downstream 280873 49890587 ~ 50027397 (+)
LOC110500631 NA coding downstream 425840 50035554 ~ 50043842 (+)
G1747830 NA non-coding upstream 20927 49459688 ~ 49585172 (+)
G1747833 LOC106608620 non-coding upstream 21337 49458248 ~ 49584762 (+)
G1747832 NA non-coding upstream 24711 49563533 ~ 49581388 (+)
G1747842 NA non-coding upstream 120176 49478939 ~ 49485923 (+)
G1747831 NA non-coding upstream 148949 49456453 ~ 49457150 (+)
G1747905 NA non-coding downstream 55090 49664804 ~ 49665123 (+)
G1747966 NA non-coding downstream 59033 49668747 ~ 49668956 (+)
G1747975 NA non-coding downstream 65521 49675235 ~ 49675508 (+)
G1747977 NA non-coding downstream 66337 49676051 ~ 49676367 (+)
G1748021 NA non-coding downstream 149376 49759090 ~ 49759342 (+)
G1747814 LOC106606817 other upstream 159473 49445839 ~ 49446626 (+)
G1747255 NA other upstream 628341 48977326 ~ 48977758 (+)
G1746471 LOC106608612 other upstream 1242173 48325100 ~ 48363926 (+)
G1746210 NA other upstream 1510980 48094767 ~ 48095119 (+)
G1744645 NA other upstream 2438445 47163904 ~ 47236823 (+)
LOC110500883 LOC106577571 other downstream 989196 50598799 ~ 50615280 (+)
LOC110500674 dulda other downstream 1506731 51116362 ~ 51133346 (+)
gbrap gbrap other downstream 1524375 51134089 ~ 51142008 (+)
G1749651 NA other downstream 1752972 51362686 ~ 51363380 (+)
G1749650 NA other downstream 1809255 51418969 ~ 51450475 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G140514 LOC106908230,LOC105925506,LOC101079287,LOC100690429 non-coding NC_053125.1 CM020922.1 1719925 ~ 1725333 (-)