LOC110500632 (ddit4l)


Basic Information

Item Value
gene id LOC110500632
gene name ddit4l
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 50053888 ~ 50056399 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958096.1
TCCCCGACCCTTTTCTCGAGCTGTAGACATTGTTGATGTCAGTGTGGTTGTGGTGGAGAAAATATTATTGTTGACCCTATGTGGGGGAAGTATTTATGTAAGagaacatttatttaaaaaaactaaGTTATTTATTTTGGGCAAACATCAAGcacTTTAAAAAGGAACAAACGGTGTGTCACTATGGTTGTTGCTACAAGCACACTGAACAGTAAAAACGCTGAATGCATATCAGAATTGGTTGACCGTAGATACGAACAGGCTTGTATCGACAATGAGCTGGATTTCTGGGACCACTGTCTGGCTGAACCCCACCTGAATGTGGAGGTGTCTGAGGACAGGACATGTCAGCAGCTGGCCAAGATGTTCGAGACCTGCCTGTCGCGGGCCAAAAAGACCACGCTGCACTGCTCAAAGGTGCTGGTCCCGGAGAAGCTCACTCGGAGGATAGCGCGTGATGTCCTCCGCCTGTCATCGGGCGAGCCATGTGGCATGCGTGGCTGTGTGCTCTACGTGCACCTGGAACAGGAGAAGTGCTGCAAGCAGCTGGAGCGCATTGTGTATAACGCAGATGTGGTGCCCACTTTTGAACTGACACTGGTGTTCAAACAGGATGGCAGTGCTTGGCCCAGCCTCAGAGACTTCCTGCACATTGGTGCCTGTTTCACTCCAGGCTTCAGGCATGTGCTGAAACTCAGTCCGGGCTTCCGGCTCATCAAAAAGAAGCTCTACTCCTCCTCGGCTGGTACCGTGGTAGAAGAGTACTGAGGCAATGGCGGAAGGTGGGactctttggggggggggggtaagggtACAATGCACTTCTACACTTGAGTGTGAATGAAAAATCACTCCTGGAGggtcttttgtttgttttgtatgaTTACAGTTTGTCAAGTGATGGCGTGCTGGTATACGAAGGTTATCGGAGGTGTCCAAAGGCCGGTCAACCAGCCTGTCTGTTCCAATGACCAGAATGGTACAGCTTATTATTCTAAATGGGCAGGCTTGGTTACTGTAATGGATTATGGTCTAATGCCTGAACAAGATTAGCATAACTGTCATTGACTTCACAATATTTGAACAAGCTTTTCCAATCAGCTGAAGTTAAATGTAACATTCTGAATATATttatattgtcacatacaccagatggGTGTTTTacggggttaagtgccttgctcaagggcacattgacagcttttatttttcaccttgtctgctctggtattcaaaccagtgacctttcagtgCTGGCTgtacgctctaaccgctaggctacctgctgccctttAGAGAGTCTTTGGTAATCAATAATTGTCCTACTCATAATTCAAAATTATAAAGATTTGGCAATTCATGTTTAATGTTTTGATGTCCTGGTTTTCCACATTTTAGTAAGTGTGTTTGTTCAGTCACTAGCCACTTTGAAGTTGCATCAGTCTGGAGTTTGTTTCCAGATTTGTCCACTATGTTCAGCAAAGTGAACACTCCTAGAGGAACAGGACCTGGAATGTGGTCAGGGGCCATAATGTAAGTGTTCAATGCTGATTTGCGGGTATGTGTTTGTTAGCGAGTCATTGAATGTTTGTCCTTGTGAACATGCTGCTCATCAATGGCGCAGGCTCTCCAACCTCGATGCCTTAAACTGCCATTTAGAAAATGTTAATCAGTTCCTTTTTTTTGCACTTGTTTAGATCCAAGCTCCACGGGATTTCTGTAGAGCTTTCCTTTTTAATACCATATTTTCTGTCGTTACAATGCTGTTCTCAATTCACTGTTGCAGTGCTGTTTAAGCAACTGAGGATTTTAAAATTCCTTTTGAAGGAAGTGGGAATCTTGTATTTTtgacaataaaacattttaaaccgA

Function

symbol description
ddit4l Predicted to be involved in negative regulation of signal transduction. Predicted to be located in cytoplasm.

NR:

description
DNA damage-inducible transcript 4-like protein

GO:

id name namespace
GO:0009968 negative regulation of signal transduction biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958096.1 True 1872 mRNA 0.44 3 50053888 50056399

Neighbor

gene id symbol gene type direction distance location
LOC110500631 NA coding upstream 10046 50035554 ~ 50043842 (+)
LOC110500629 LOC106608629 coding upstream 26491 49890587 ~ 50027397 (+)
LOC110500628 LOC106608626 coding upstream 281131 49680668 ~ 49772757 (+)
LOC110500627 LOC106608625 coding upstream 391230 49654692 ~ 49662658 (+)
aco1 aco1 coding upstream 430456 49611251 ~ 49623432 (+)
LOC110500633 LOC100694115 coding downstream 25155 50081554 ~ 50083324 (+)
LOC110500635 LOC106608610 coding downstream 160752 50217151 ~ 50224340 (+)
LOC110500637 LOC106608635 coding downstream 173807 50230206 ~ 50239928 (+)
LOC110500640 LOC106608639 coding downstream 201274 50257673 ~ 50263754 (+)
spata6l LOC106608638 coding downstream 207512 50263911 ~ 50270551 (+)
G1748286 NA non-coding upstream 99450 49927491 ~ 49954438 (+)
G1748237 NA non-coding upstream 172254 49881346 ~ 49881634 (+)
G1748236 NA non-coding upstream 172761 49880903 ~ 49881127 (+)
G1748233 NA non-coding upstream 173801 49879804 ~ 49880087 (+)
G1748232 NA non-coding upstream 174209 49879319 ~ 49879679 (+)
G1748450 NA non-coding downstream 125330 50181729 ~ 50181990 (+)
G1748462 NA non-coding downstream 142947 50199346 ~ 50199546 (+)
G1748480 NA non-coding downstream 172912 50229311 ~ 50229775 (+)
G1748484 NA non-coding downstream 188181 50244580 ~ 50247205 (+)
G1748486 LOC106608637 non-coding downstream 191057 50247456 ~ 50252566 (+)
LOC110500625 cj011 other upstream 444308 49606099 ~ 49609714 (+)
G1747814 LOC106606817 other upstream 607262 49445839 ~ 49446626 (+)
G1747255 NA other upstream 1076130 48977326 ~ 48977758 (+)
G1746471 LOC106608612 other upstream 1689962 48325100 ~ 48363926 (+)
G1746210 NA other upstream 1958769 48094767 ~ 48095119 (+)
LOC110500883 LOC106577571 other downstream 542511 50598799 ~ 50615280 (+)
LOC110500674 dulda other downstream 1060046 51116362 ~ 51133346 (+)
gbrap gbrap other downstream 1077690 51134089 ~ 51142008 (+)
G1749651 NA other downstream 1306287 51362686 ~ 51363380 (+)
G1749650 NA other downstream 1362570 51418969 ~ 51450475 (+)

Expression


Co-expression Network