LOC110500633 (LOC100694115)


Basic Information

Item Value
gene id LOC110500633
gene name LOC100694115
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 50081554 ~ 50083324 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578114.2
TTGATTGGCTGGCTTCTTCCATGCAAAGTCCCGGATCAAGGTCCTCTCAATAAATACATGGCAATCTAAGGCGGGACTTGTTCAAACTAGACAAATAGTCGTGGAAGATCTGTGTAACTGAAAATAGCAGGGACATCTTATACAATGGCTGGTGGCAAGGCTGGAAAAGACTCCGGGAAAACTAAGACGAAGGCCATTTCGCGCTCACAGAGAGCCGGTTTGCAGTTCCCAGTGGGCCGTATTCACAGACATCTGAAATCCAGAACAACAAGCCATGGCAGAGTTGGGGCGACTGCAGCTGTGTACAGCGCGGCTATTCTTGAGTACCTGACAGCTGAGGTTCTGGAGCTGGCTGGAAACGCGTCAAAGGATCTGAAGGTCAAGCGTATCACCCCACGTCACTTGCAACTGGCCATTAGAGGCGACGAAGAGTTGGATTCTCTCATTAAAGCTACGATTGCTGGTGGTGGTGTCATCCCTCATATCCATAAGTCACTGATTGGAAAGAAGGGACAGCAGAAGACCGTATAACCCTGGAAACAGTGGCATTAGGTCATGTCATCTCAGGACCTGCTTAAATTGTTTTTAATAATTTTCTTGGTAGTGTTTTaggactttttatttttttatgtatgaACTTGCATCTACTCATCTATGGTATTTTTAAAGTGGCTTCAGAGAAGCTGTTTTATTTTGGGCTTGTATGTTTTTGGTACAACTGTGGTTTGGTTTGTATTGTGTACATTTTTGCATACCAGTGGCATTTCCATGTTTTGAAGTTGTCTTTGAATAAAGCTCCAAGGTATTGTGCA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0007275 multicellular organism development biological_process
GO:0000786 nucleosome cellular_component
GO:0001740 Barr body cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11251 H2A; histone H2A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578114.2 True 812 mRNA 0.44 5 50081554 50083324

Neighbor

gene id symbol gene type direction distance location
LOC110500632 ddit4l coding upstream 25155 50053888 ~ 50056399 (+)
LOC110500631 NA coding upstream 37712 50035554 ~ 50043842 (+)
LOC110500629 LOC106608629 coding upstream 54157 49890587 ~ 50027397 (+)
LOC110500628 LOC106608626 coding upstream 308797 49680668 ~ 49772757 (+)
LOC110500627 LOC106608625 coding upstream 418896 49654692 ~ 49662658 (+)
LOC110500635 LOC106608610 coding downstream 133827 50217151 ~ 50224340 (+)
LOC110500637 LOC106608635 coding downstream 146882 50230206 ~ 50239928 (+)
LOC110500640 LOC106608639 coding downstream 174349 50257673 ~ 50263754 (+)
spata6l LOC106608638 coding downstream 180587 50263911 ~ 50270551 (+)
LOC110500641 LOC106608640 coding downstream 213736 50297060 ~ 50355717 (+)
G1748286 NA non-coding upstream 127116 49927491 ~ 49954438 (+)
G1748237 NA non-coding upstream 199920 49881346 ~ 49881634 (+)
G1748236 NA non-coding upstream 200427 49880903 ~ 49881127 (+)
G1748233 NA non-coding upstream 201467 49879804 ~ 49880087 (+)
G1748232 NA non-coding upstream 201875 49879319 ~ 49879679 (+)
G1748450 NA non-coding downstream 98405 50181729 ~ 50181990 (+)
G1748462 NA non-coding downstream 116022 50199346 ~ 50199546 (+)
G1748480 NA non-coding downstream 145987 50229311 ~ 50229775 (+)
G1748484 NA non-coding downstream 161256 50244580 ~ 50247205 (+)
G1748486 LOC106608637 non-coding downstream 164132 50247456 ~ 50252566 (+)
LOC110500625 cj011 other upstream 471974 49606099 ~ 49609714 (+)
G1747814 LOC106606817 other upstream 634928 49445839 ~ 49446626 (+)
G1747255 NA other upstream 1103796 48977326 ~ 48977758 (+)
G1746471 LOC106608612 other upstream 1717628 48325100 ~ 48363926 (+)
G1746210 NA other upstream 1986435 48094767 ~ 48095119 (+)
LOC110500883 LOC106577571 other downstream 515586 50598799 ~ 50615280 (+)
LOC110500674 dulda other downstream 1033121 51116362 ~ 51133346 (+)
gbrap gbrap other downstream 1050765 51134089 ~ 51142008 (+)
G1749651 NA other downstream 1279362 51362686 ~ 51363380 (+)
G1749650 NA other downstream 1335645 51418969 ~ 51450475 (+)

Expression


Co-expression Network