LOC110500637 (LOC106608635)


Basic Information

Item Value
gene id LOC110500637
gene name LOC106608635
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 50230206 ~ 50239928 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578117.2
gcGGAAGTAAAAGTCATATTTACGTTTCAACTCTCTTTGACGAAGGAATACTGGCTGAATTCCAAACTCGCAGTCGACTAAAACATGTCTAAACTACAGTCGTTTAGTGTGTTTTTAGATGATCGTTTATCGGCGGTCGCTCTTGAGATTTTCGGGGCAGTTGAGAAAACAGTAGTGGAGTACAAGGAAGATAATGATCGTTTAAGAAGAATGCTGCTGATCACGCCGGAGATAAAACTATGTATAGACTCCTTGcagccctctctcaccatctctgaaGAGGAGATTTCCCCTGAGCAGCAGCACTGTGATCAGGAGTGGAGCCCCAGTCTGGGGCAGGAGGACCCAGAGCCCAcacagattaaagaggaacaggaggaactcaggaccagtcaggaggaagagcagcttcgGCTCTATGATACCAACGACTCCATATTCACGCCTTCCTGTGTGAAAAGTGAATGTGATCAGGAGGACCCATGTCAAGAAGCCATACTAGCTGAATACCCAACTCTCAGTCTACTGAAAATGTCTAAACTAAAGTTATttagtgtgtttttaaatgagCGTTTAACGGTGTCTGCTGCTGTGGAGATTTTTGCCGCAGTTGAGAAAACGGTAGCTGAGTATCAGGAGGAGAATGATAGCCTACGGAGGCTGCTGCGGCTCACCCCAGAGATAAAATTATGTAGAATAGacTCCCTCCAGTCTTCTCTCGCTGTCTCCGAAGAGGAGATTCCCTCTGAGCAAAAGCACTGTAAGCAGGAGTGGAGCCTCTGTCTGGGGCAGGAAGAACCAGAGCCCAcacagattaaagaggaacaggaggaactcaGGACCAGTCAAGAGGAAGAGCAGCTTCAATGGCTCTTTGATGCCGAAGACTCCATATTCACTCCTCCCTGTGTGAAAAGTGAATGTGATCAGGAGGACCCACATTGGTTCTTGACTCCTCCCCAAACCCAGACTgtggagaatagagagagtgacTCTAAACCAGTGAATCTCAGACCTTTTGGCACTGTGACTTACCTAAAGGGTCTAGACACTTCCTGTGACACTCTAGATAATCAAAACAATGCCTCCAGCCACAACTCCGCCGTCAGCAGCGACCGAGTCGGAATGAACAGCAGCCCACTATTGGATCCCAGCTCACCATTGAATCCAAACCCATCAGTGGGGGAACACTGTTTGAAGCTCAGCACCACGTCTAGAAAAATTCACTGCTGCCGTGACTGTGGTGAAGCGTTTGCTCTGAAAGCTGACCTGCAGAGGCATGTGACTCTAGCCAAGAAAAGACTCAGTGAATGCCACTTCTGCAATAAATGTTATAACTCCATCTGTAAACTGAAGGCCCATGTCAGACTCTGTCACGGTGGGAAAACCTGCACCTGTCCTGTTTGTGGCAAGACCTTCAAATACAAAAAAGATCTGTCCAGGCACATGaggattcacacaggagagaaatcattccactgtggtgactgtgggaaaagcttcagtCAGAAGGGAGACCTAAATAAGCATATacggactcacacaggagagaaaccatttagctgtcgtgactgtgggaaaagcttcagtCTCAAGGAGAACCTAACCAAGCATAcactgactcacacaggagagaaatattttagctgtggtgactgtgggaaaagcttcagtCAGAAGGGGGACCTAAGTAGGCACATACTGACTCACACAGAAGAGAAGCCATTCatctgtggtgactgtgggaaaagcttccGTCGTAAGGATAACCTAACAGATCATGTTCGGagtcacacaggagagaaaccatttagctgtgttgactgtgggaaaagcttcagtGCCAAGGGGAACCTAAACGTTCATAAATTGACTCATACAGGAGAGAAACAACATGGCTGCTCAGTCTGTGGTAAAAGATTCACTAAGAAGGCATCTCTGCTGACACATGTGAAAAACATCCACAAAGcaagaagacaagacaaaaaatgAACGAAGAAAGAAAATTAGGACATAGACACCGAGAGTAGATTTGTACAATAAATGCATTATGTGGGTGGAATACTGTatcaacacagaataaaacaataaaaGCCC

Function

NR:

description
zinc finger protein 250-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578117.2 True 2097 mRNA 0.46 3 50230206 50239928

Neighbor

gene id symbol gene type direction distance location
LOC110500635 LOC106608610 coding upstream 5866 50217151 ~ 50224340 (+)
LOC110500633 LOC100694115 coding upstream 146882 50081554 ~ 50083324 (+)
LOC110500632 ddit4l coding upstream 173807 50053888 ~ 50056399 (+)
LOC110500631 NA coding upstream 186364 50035554 ~ 50043842 (+)
LOC110500629 LOC106608629 coding upstream 202809 49890587 ~ 50027397 (+)
LOC110500640 LOC106608639 coding downstream 17745 50257673 ~ 50263754 (+)
spata6l LOC106608638 coding downstream 23983 50263911 ~ 50270551 (+)
LOC110500641 LOC106608640 coding downstream 57132 50297060 ~ 50355717 (+)
LOC110500645 LOC106608645 coding downstream 241914 50481842 ~ 50486101 (+)
LOC110500647 NA coding downstream 249200 50489128 ~ 50494517 (+)
G1748480 NA non-coding upstream 431 50229311 ~ 50229775 (+)
G1748462 NA non-coding upstream 30660 50199346 ~ 50199546 (+)
G1748450 NA non-coding upstream 48216 50181729 ~ 50181990 (+)
G1748286 NA non-coding upstream 275768 49927491 ~ 49954438 (+)
G1748237 NA non-coding upstream 348572 49881346 ~ 49881634 (+)
G1748484 NA non-coding downstream 4652 50244580 ~ 50247205 (+)
G1748486 LOC106608637 non-coding downstream 7528 50247456 ~ 50252566 (+)
G1748499 NA non-coding downstream 36788 50276716 ~ 50277372 (+)
G1748517 NA non-coding downstream 117447 50357375 ~ 50358092 (+)
G1748560 NA non-coding downstream 135679 50375607 ~ 50415360 (+)
LOC110500625 cj011 other upstream 620626 49606099 ~ 49609714 (+)
G1747814 LOC106606817 other upstream 783580 49445839 ~ 49446626 (+)
G1747255 NA other upstream 1252448 48977326 ~ 48977758 (+)
G1746471 LOC106608612 other upstream 1866280 48325100 ~ 48363926 (+)
G1746210 NA other upstream 2135087 48094767 ~ 48095119 (+)
LOC110500883 LOC106577571 other downstream 358982 50598799 ~ 50615280 (+)
LOC110500674 dulda other downstream 876517 51116362 ~ 51133346 (+)
gbrap gbrap other downstream 894161 51134089 ~ 51142008 (+)
G1749651 NA other downstream 1122758 51362686 ~ 51363380 (+)
G1749650 NA other downstream 1179041 51418969 ~ 51450475 (+)

Expression


Co-expression Network