LOC110500640 (LOC106608639)


Basic Information

Item Value
gene id LOC110500640
gene name LOC106608639
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 50257673 ~ 50263754 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578121.2
GTGCGACTTTGCGGAAAACGGTGAGGATACATTGTGGAACAACGGAAAAAGGTACATGTGGAATGGCCCGACTGACAGGGAACATTTAGCCAATGTATTATGTTTTTATAGggtagttaaaaaaataaaaccatTAGTTAGCAAATGTTTGTGTGAATTATTATATGCATGTGGTTGGTAAGCTTTACTTTCCCAGTAGTACGTGCATTTgaacactagctagctagtagtAGCGACAACCAGGCTGTTTGCAACAGAAGTAAAAACACACGACCAATGTCCAGCGAATATTTAACACCGTCAAATGAGAAGAATGATGTTGCCAGTGCCGCTGAGAATAAGGATGGACAGAGCAGTGCTAATAATGGAGAAACCGAGACTCTTTCAAAAAAACAGAGAAAGAAGCTTATGAGGCACCAGaaatgggaggaggagaggaacctTCGTAAGCAGAAGCGAAAGGagaagaggcagaagaggagCCTTGAGAGGAAGAaccagggggaggagggaggggagtttGTGGGCCGGAAGCGTTTGAGGAAAGAGGTGACACCCAGTAGCCCCCTGAGACTGGTGATAGACTGCAGCTTCGATAACCTCATGATGTTTAAGGATGTTAGGAAGCTCCATAAACAAATCCAGAGATGTTATTCAGTTAACAGACGAGCGGCGCACCCTGTTCAGttTTATTTAACCAGCCTTGGTGGACAGCTGAAGCAAAACATGGATAAGACTGATGAAGGATGGGTTAACTGGAAGGATATAACGGTCAAAACAGAGGCGTACCATGAGGTGGTGGTCAAGGAGGAGCTGGTGTACTTGACCTCTGACTCTCCCAATGTGCTGACAGAGCTGGATGAAACCAAGGCCTATGTCATCGGAGGCCTGGtggaccacaaccaccacaaGGGCATCACCTTTAAACGGGCTCAGGAGCTGGGGATTGACCACGCACAGCTCCCACTGAACAGCTTTGTCAAGATGAATAGCCGCAAAGTGCTGGCGGTCAACCACGTGTTTGAGATCATACTGGTGTACCTGGAGAAAGGGAACTGGCAGGAAGCCTTCTTCACTGTCTTGCCTCTAAGGAAAGGGGCCATTCCCCTGGGCCAGGAGGGCATAGCCACGGAGGATGAGGAGGAATCTGACAGAGACGCAGAGACGGTCACACCGAACACAACGGGCAACGAACAGGACCAACAGTAGAACGTACAGGGATGACAGGACACACTGCAGTTGGAAGACGCCCCTAAATATGAGTGCAGCATAGCTGTGTCCTAATGCGAATTATCGATTGCAAAATGGTTGATTTAGtgagttttgtatttattttgccgAATTATACATCTTTTTTTTAGTCAATGTTTAAATAACATAAAATTTCTGTTTTCAGCTTTATTTAATGGAAGATATTTTACTTGGAGTGCTTATATTAAGTGAACAAGTCGTACATATCTGCAGTTCTACCTTCAGACCTATTCTTGATGCTCTGCAGCAAGCCTTGTTtcattaaaatgtttttaaaaaaata

Function

NR:

description
tRNA methyltransferase 10 homolog A-like

GO: NA

KEGG:

id description
K15445 TRMT10, TRM10, RG9MTD; tRNA (guanine9-N1)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578121.2 True 1534 mRNA 0.45 7 50257673 50263754

Neighbor

gene id symbol gene type direction distance location
LOC110500637 LOC106608635 coding upstream 17745 50230206 ~ 50239928 (+)
LOC110500635 LOC106608610 coding upstream 33333 50217151 ~ 50224340 (+)
LOC110500633 LOC100694115 coding upstream 174349 50081554 ~ 50083324 (+)
LOC110500632 ddit4l coding upstream 201274 50053888 ~ 50056399 (+)
LOC110500631 NA coding upstream 213831 50035554 ~ 50043842 (+)
spata6l LOC106608638 coding downstream 157 50263911 ~ 50270551 (+)
LOC110500641 LOC106608640 coding downstream 33306 50297060 ~ 50355717 (+)
LOC110500645 LOC106608645 coding downstream 218088 50481842 ~ 50486101 (+)
LOC110500647 NA coding downstream 225374 50489128 ~ 50494517 (+)
LOC110500651 LOC106608649 coding downstream 241484 50505238 ~ 50508101 (+)
G1748486 LOC106608637 non-coding upstream 5107 50247456 ~ 50252566 (+)
G1748484 NA non-coding upstream 10468 50244580 ~ 50247205 (+)
G1748480 NA non-coding upstream 27898 50229311 ~ 50229775 (+)
G1748462 NA non-coding upstream 58127 50199346 ~ 50199546 (+)
G1748450 NA non-coding upstream 75683 50181729 ~ 50181990 (+)
G1748499 NA non-coding downstream 12962 50276716 ~ 50277372 (+)
G1748517 NA non-coding downstream 93621 50357375 ~ 50358092 (+)
G1748560 NA non-coding downstream 111853 50375607 ~ 50415360 (+)
G1748578 NA non-coding downstream 138867 50402621 ~ 50407729 (+)
G1748657 NA non-coding downstream 270255 50534009 ~ 50536926 (+)
LOC110500625 cj011 other upstream 648093 49606099 ~ 49609714 (+)
G1747814 LOC106606817 other upstream 811047 49445839 ~ 49446626 (+)
G1747255 NA other upstream 1279915 48977326 ~ 48977758 (+)
G1746471 LOC106608612 other upstream 1893747 48325100 ~ 48363926 (+)
G1746210 NA other upstream 2162554 48094767 ~ 48095119 (+)
LOC110500883 LOC106577571 other downstream 335156 50598799 ~ 50615280 (+)
LOC110500674 dulda other downstream 852691 51116362 ~ 51133346 (+)
gbrap gbrap other downstream 870335 51134089 ~ 51142008 (+)
G1749651 NA other downstream 1098932 51362686 ~ 51363380 (+)
G1749650 NA other downstream 1155215 51418969 ~ 51450475 (+)

Expression


Co-expression Network