LOC110500651 (LOC106608649)


Basic Information

Item Value
gene id LOC110500651
gene name LOC106608649
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 50505238 ~ 50508101 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578135.2
TATGTCAATCATTCATTTCCACTCCAATTTCGTAATTGGAGTGGACATGGAATGACCTATATATCTGCTGTTCATTCATTTAAATGTAACTATTTTTGTTTATTAAAAGTAGCTGGACTTCATGTAATCCATTTCCACCACAAAAACCCTAAAAATAATCCTCTAGTACAGAGCAAAAGGACAGCCGCGTCCAGAACTTCTCACCCTCATCAAATATGCACCGGGTCTTCGCTCAGTGCTTCAAACGCGCCAGTTAGAGAGGGAGTAATCCACttgcatttatttttttgaaGCGCTCTGTCACTACGCACTTCATTTGTAGCCTACTACAACACAATCCATGTTCTTCTGGTCAATAATTTCAAAACTGTTTGGTACGATGGATTGGGTCACAACGCCCGAGCGTAAAGCGTAAAGATGCGCAGGGATATTCCATGAGGGCGATGTTTCAAGGTATATCCAGAATTTGGAGATGCCCACCTTTGCCAAGGAGGAAGCACCACTGTTTACAAGGATCCCATCCAGAGGAGCCATGTGTCCTGACCCCAGGCTGCATGGTCTCGGAATACCAGGAAAAGTACCCTGCCTACTGCACCACTGTTGTCCGTGCAGCCAAGAAGCTGAAGAATGAGTACCAGCCAATGGAAGGAAAGATATCCAACATGACCACTTTCAGGTCAGACTACGTGGCCCATGAAGTGACCCAGAGGCCACCAAAGGTCACCAAGTTGTATGTGCCACCTGATGGGAGAATGAGACACAGCAGCACTTACGTCAGGGACTACCCAACTCACCCTGTTCAGAAGCACATCATGACCAAGCCAGATGGGTACCATCCGCCCACAGCAAAGATGGTTGCCCAGTCTTTATACAAAGAGGATTTTCGAGCATGGCAAATCCAGAAAGTCCAACCCTACAGGACGCGTGACAACCTGAAGTTGAACAACAGCAAATTTGAGGTGACCACCACCTATCAAGACGAATTCTGCTACAAGGGCCCAGCCGAGGCCAGGGAGAGATTCAAACCAGCACCCGATGCCCCAGAGACCCTGCCCTTCGATGGCGCCACCAACTACCAGACGCAGTATATGTCCCATCCTGTCTAGCCCAGGCAGCCCAAGGAGAAGGCCGTCTACAGGCCCACCAGCGCCCCACTCAATGGGGTCTCCACCTACAGGCAGGACTATCTGGGCCTGCCGGCCAAGCCCGTCAAGCCCTTCAGGGCCAAGGTGGCTTGGGAGAGCAGCCCGGCAATCTTTCAGGGGACCACCGAGTTCCATGATCAGTACAAGTCCTGGCCCCTGCAGCCCAAGCACCGGCACCATGCTGAGGAGTACTGCCCAACTGAGGGCACTATGGTTGGTCTGCCCACAGCTCATGCTGACCATGTCAGCCACGAGTGCCTGGACAAAGGAGGCCAGGGCACCCCTCCAGACCAGGTCCACCATGAAGGAGCACTACCGTGCCTGGGACATGTTGCGTCCCCGCCCCACTTTACACGCAGATGAGCTAGAGAAACCCAAGGGGGCTTTCGCCAAGACCACCACCTTCCACTCAGTATACACACCCAAGACGGCCCAGCGCGCCACTAGCTTCAAGCCCACTCAGACGCTGCCGAGTCCCCAGGCCATGAATGAAGACTGTCTGTCGCCCCACCTACACGCCCAAGGAGATCCCATCTTGCCCAGCCTGGGATGGCTGTCCTCCTGGCTTTGAGTACAGCTCCATGGGGGAGACACAGGCTGTACCGGACCATCTCGATACAGGAAACAGGGCCGAGTCAGCTGGCCGCAGCCACAAGTCTCCTTACTCCCACAGCAGGAAGAGCTGCATGCTCCCCAGCCAAGCCAAGAGGGTGCCAGAGTCCTGACTACTAACCtgtacacacacagctagctagaGGACTTTCTTATTTTTCTATTCAAATAGAGCACCTTCAGTATTGTTTTATAgtcacatttttaaaaaatgtgataATGCTAGTTgtgcattttatttattttatacaaagACGTCACAAATTCTTACTTGAACATTACATCGTTAAGCTTTTTGCTATTTTATGTTATAAGTTAACAATGTGGACATGATGCAGCAGAATGTGTGTACCAGCAATATAATCAATTAAGTTTTTATTAATGAGCTGAATAAAAAGCCAGTccattaaaggcccaatgcagctgt

Function

NR:

description
PREDICTED: stabilizer of axonemal microtubules 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578135.2 True 2184 mRNA 0.50 4 50505238 50508101

Neighbor

gene id symbol gene type direction distance location
LOC110500647 NA coding upstream 10721 50489128 ~ 50494517 (+)
LOC110500645 LOC106608645 coding upstream 19137 50481842 ~ 50486101 (+)
LOC110500641 LOC106608640 coding upstream 149521 50297060 ~ 50355717 (+)
spata6l LOC106608638 coding upstream 234687 50263911 ~ 50270551 (+)
LOC110500640 LOC106608639 coding upstream 241484 50257673 ~ 50263754 (+)
LOC110500882 NA coding downstream 10917 50519018 ~ 50530191 (+)
LOC110500656 LOC106608653 coding downstream 54800 50562901 ~ 50578867 (+)
LOC110500658 LOC106608695 coding downstream 83945 50592046 ~ 50598188 (+)
trnaa-cgc-5 NA coding downstream 90442 50598543 ~ 50598614 (+)
LOC110500883 LOC106577571 coding downstream 90698 50598799 ~ 50615280 (+)
G1748560 NA non-coding upstream 89878 50375607 ~ 50415360 (+)
G1748578 NA non-coding upstream 97509 50402621 ~ 50407729 (+)
G1748517 NA non-coding upstream 147146 50357375 ~ 50358092 (+)
G1748499 NA non-coding upstream 227866 50276716 ~ 50277372 (+)
G1748486 LOC106608637 non-coding upstream 252672 50247456 ~ 50252566 (+)
G1748657 NA non-coding downstream 25908 50534009 ~ 50536926 (+)
G1748679 NA non-coding downstream 61163 50569264 ~ 50570060 (+)
G1748685 NA non-coding downstream 79041 50587142 ~ 50587464 (+)
G1748703 NA non-coding downstream 109326 50617427 ~ 50617656 (+)
LOC110500625 cj011 other upstream 895658 49606099 ~ 49609714 (+)
G1747814 LOC106606817 other upstream 1058612 49445839 ~ 49446626 (+)
G1747255 NA other upstream 1527480 48977326 ~ 48977758 (+)
G1746471 LOC106608612 other upstream 2141312 48325100 ~ 48363926 (+)
G1746210 NA other upstream 2410119 48094767 ~ 48095119 (+)
LOC110500674 dulda other downstream 608344 51116362 ~ 51133346 (+)
gbrap gbrap other downstream 625988 51134089 ~ 51142008 (+)
G1749651 NA other downstream 854585 51362686 ~ 51363380 (+)
G1749650 NA other downstream 910868 51418969 ~ 51450475 (+)

Expression


Co-expression Network