LOC110500656 (LOC106608653)


Basic Information

Item Value
gene id LOC110500656
gene name LOC106608653
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 50562901 ~ 50578867 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578142.2
TGTACcacatgtatatagcctcgttattgttatttcagTCACATGAGTATGGCCTGATATATGCTTCTGACATGGTTAAACAGCTTTTTTTTTGCTGCCATCATGTAATGCCAATGTTGACAGAATACGTCACTTACACACATGCTAAACTCTTGTTTAGCATATCAGGTAGTACAGTAGGCCTTTGTTTTTAGTGCAGCAAACCAATCCAATAGAATACTGTTGAGAAATGCGATGGATACAACAACGCCACATCCACTATATCCTGCCAGGGGCGGAAGTCTGGAAGTCTGTTCCAAACAGTAATCATTCCAGCACGGAGTGTGAAGTGTCAGCATCTCTCCCTTCGCACGCCCATAATTCCTGTCATGTCGTTCCGAAGAGGCGTGGTCAGACAGAGCAAGTTTAGGCACGTTTTTGCCCAGGCATGGAAGGCTGAGCACTGCATCGATGATGTCCGAGTGTCCCGTGTCACATGGGACGGGCCCCTCTGCGCTGTGAACCCCAAATTCACCGCAGTCATCATTGAATCAGGCGGAGGAGGGGCCTTCCTCGTTCTGCCACTCAACAAGAGTGGCAGGATTGACCAGGCCACTCCCACGGTGTGTGGACACGCAGCCCCGGTGCTGGACGTCCAGTGGTGTCCCCATGACGACAACATCATCGCCAGTGCCTCGGAGGACTGCACCGTAAAAGTTTGGGAGGTCCCTGATGGAGGGCTGACAGGGCCAATGACAGAGCCTGTAGTAACACTGGAGGGCCACAGCAAACGAGTGGGGATCCTGGCCTGGCACCCGACAGCCTTCAACATCCTCCTAACTGCAGgctgtgataacctggtgtgtgtgtgggacgtGGGCACGGGGGAGCTGGTCTACCAGATAGCCGATGCCCACCCCGACCTGATCTACAGCGTGAGCTGGAACCGGGAGGGCAGTGCCATCTGCACCGTGTGCAAGGACAAGGCGTTGCGTGTCATCGACCCGCGACGGGGCACCGTCCTCAAGGTGAAAGAGAAGGTCCACGACGGCACCAGGCCCATGAGGGCCGTGTTCCTCTCGGATGGGAAGATCCTGACCACGGGCTTCAGCCGCATGAGTGAAAGGCAGCTGGCCTTGTGGGATACGAATGATATGTCTGAGCCAATGGCAGTGCAGGAGATGGACACCAGTAACGGTGTTCTCCTTCCCTACTATGACCCTGACACTAACATGGTCTACCTGTGTGGAAAGGGGGACTGCACCATCCGGTACTTTGAGGTGACAGACGAGTCGCCTTATGTCCATTTTCTCAGCCTGTACAGCAGCAAAGAGCCCCAGCGAGGAGCAGGCTTTCTCAGCAAGAGGGGCGTGGACGTCAACAAGTGTGAGATCGCCAGGTTCTACAAATTGCATGAGAGGAAAGTAGAGCCCATTTCTATGACGGTACCACGGAAGTCAGACCTGTTCCAGGGGGACCTGTACCCGGACACTGCCGGTGTGGAGCCCTCTCTCCTGGCCGAGGATTGGATCGCTGGGCAGGACGCGGCACCCCTGCTAGTCTCTCTGAGCGGGGGCTATGCTGGCACCCCCTCCAAGCACAGAGACAAGCTCAGGAACAAGCCCAAGCTGCAGTCGCAGGGCTCCGGGACGGATTCTACCCCAGTCCCCCGGCAGGCCGCCTCTCCCACGGCAACCACCACCGCCAAGGAAATGGAGAGcgagggggtgggggtggtgcAGCAGAGGGTCACTCGAGCAGAAGGAGAAGGAGCATCCGATAGGGCGAGAAGAGAGGAGGAGGTGCTGAGTGAGGTGCTAGCGGAGGTGAAGGCCCTTCGTTCAGTGGTCTTGGCCCAGGGCCAGAGGATCGAGCTGTTGGAGAGGCAGCTGGTCCGCATCGAGGATGGGGATGTCTGATTGGCCGATGGGGCATCACCACTACACCCAAAGGGCATTCTTACTAAAACTCCATAGACCATAGCCTTACTAGAATCAACAGCAGTACCTTAAGCTGAGTGGGAGGATGTAGTGAAGTGTAGCTCCGTGACTAACTGTGTATATCACAGAGGGGCCGAGAATAAGGTGAACTGTTATAGTGAAGGTGTTTTGTGGGTGAATCTAAATTGTTTCCTTGTTCCCTCGCATCCTCTCCCCTCGCCTTCTCAAAACGCATTGGAGGACAAGGTCAGAGGTTCCTCCCTTCGAGACTTCTCTTCCAATGGGGTTTGAGAAGGAAGAGGGAACAAGGAAACACAATTGAGATGCACCCTACATTCTCTATAGATGCTGCTTCAGTTAGATGGCAGGTGATATAGGATGAATGGAGATCATCTGTATAAAACATCCATACTGCAGTAAGACATGTCACCAGATTTTTTTTGAAGGAGCATCGATGGTGACAGTATTTGAAGGTGTATCACTACAAAACCTAAGACATGCGGAATCAATCATAGCCTACTCACGAATCCTTATGACATCTGGCACAAAGGTCTATGTTAATTTGGTACATTTTGCAAAATGGCACATCAGTATACATTGTATGTGTGTACACCCTCAATAAATGTTACCAAGTAGATTGCCAGATCATTTACAGTTGCTGTGTTCATTGAAGCACTCGCATTGTGAATCCATTAGGGATTGTTTCATCAGGTAGTTACAGCTGCTAATCATGTCATATCAAATGTGATACTCCATTATTAATACTTATACATTTGTACATGTATGGCTTTATACGTTGGCTTTATACATTACCATCATAGGAAGCTATTACTCTAAAATCAGACCATTGGTATTATAAATATAATTGTATATGCTAATAGCGCTACGCTGTTTACAAAACTGCACTGGTTCATTGCGATTGGATTAGTTGTATTGAATTGTGCTGTACAGCGCATATATTGACATATAAAGAAAAACAGATCGGTCAATTTCCAAATAATGTTTATTTTGATATGAAGCTCTTTTTCTTACAAATGATGTGAAGGACGTGAGTTGGAGGTAGCTTAAAAAACATTCCTATCATGTATGTTTCTCTTTTTGGATGAtttttgtaattatttttttCAACCTTAGAAGGTAATACTTAATTTGTGCTCTCCAACTAAGTTGTCTTAGGTGAATGAAGCAACATGCAGTATCATTTGTCACAAAGGGTTATAAATTCCAATGACGGCTTATAACAGAGTTCAAGTTAAGTGTTACCTCAGAGAATGTGTTCCAAGCAGAACTAATGTAATATACCATTAACCATAGCAGTTGTATGAGTGTCACGAGGCACAGAACTTTAAAATGTTACAATGAAATTAgattgaacttttttttttttttttactgtgaatGATGTAATCCAAGCCAGTAGAACCTACTAGACTAATGTAGCAGCAGCTGCTCTGTTTCTATTTGAAGATGGGAAAGAAAGGGCATACGATGCTCGACTGTTGGACGGAACTGAAAAATAATAGTTCACtgttacatttagatttgtttgcATTTATCCGCAGTTTATACCTCACCCCTTTTGCAGCCTTGGGTACTGTTCacatatagcctggtcccagatctgtttaagGCTGTGTTGTCTACAATGACTACAGGAGTTGGCGAGACAGCACAAACAGTCCTGGGACCAGGTTAGTTCACATCGGGCTCATGTGTTTGTTTTATTTACTTGATTAATATTTCTGtatgctctgtcataatacacattttatgtgtgtggttgtgaacAAATAGAGGATGAAAATAACACTCCACTGTGCAAATCTTCCAATAAACACTCCTTTCTCTTTT
>XM_021578141.2
GTACcacatgtatatagcctcgttattgttatttcagTCACATGAGTATGGCCTGATATATGCTTCTGACATGGTTAAACAGCTTTTTTTTTGCTGCCATCATGTAATGCCAATGTTGACAGAATACGTCACTTACACACATGCTAAACTCTTGTTTAGCATATCAGGTAGTACAGTAGGCCTTTGTTTTTAGTGCAGCAAACCAATCCAATAGAATACTGTTGAGAAATGCGATGGATACAACAACGCCACATCCACTATATCCTGCCAGGGGCGGAAGTCTGGAAGTCTGTTCCAAACAGTAATCATTCCAGCACGGAGTGTGAAGTGTCAGCATCTCTCCCTTCGCACGCCCATAATTCCTGGTAACCATTCCCTTGTTGTCTACATTTTAATTTACCAATATTTTGACGCGTTTTACATGTCTGTTCATTTTAAGTATTGCACCACAGATACGCATTTTTTAACCAACTAGGTGGAAAATCATTTTGCAACAGGATTGTGCGCCGCGcgtctttattttttttgagcgcTAATCATCGCTTGTGTTTATCCATCTACAACAATTATTTCCTGCCATCGTGGTAGGTCGGCTGTGTAGCCGTCTCTCAGACATAGCAAAGGATTAAGTTACTGCTGGTGGCGGATTATTCTATTGGCTTCCTCTTGTCACGTTCTAGTCTTCGGCCTTTATCTTTTCCAATTGAAGTTGCCTGAAATCGAGTCATGTCGTTCCGAAGAGGCGTGGTCAGACAGAGCAAGTTTAGGCACGTTTTTGCCCAGGCATGGAAGGCTGAGCACTGCATCGATGATGTCCGAGTGTCCCGTGTCACATGGGACGGGCCCCTCTGCGCTGTGAACCCCAAATTCACCGCAGTCATCATTGAATCAGGCGGAGGAGGGGCCTTCCTCGTTCTGCCACTCAACAAGAGTGGCAGGATTGACCAGGCCACTCCCACGGTGTGTGGACACGCAGCCCCGGTGCTGGACGTCCAGTGGTGTCCCCATGACGACAACATCATCGCCAGTGCCTCGGAGGACTGCACCGTAAAAGTTTGGGAGGTCCCTGATGGAGGGCTGACAGGGCCAATGACAGAGCCTGTAGTAACACTGGAGGGCCACAGCAAACGAGTGGGGATCCTGGCCTGGCACCCGACAGCCTTCAACATCCTCCTAACTGCAGgctgtgataacctggtgtgtgtgtgggacgtGGGCACGGGGGAGCTGGTCTACCAGATAGCCGATGCCCACCCCGACCTGATCTACAGCGTGAGCTGGAACCGGGAGGGCAGTGCCATCTGCACCGTGTGCAAGGACAAGGCGTTGCGTGTCATCGACCCGCGACGGGGCACCGTCCTCAAGGTGAAAGAGAAGGTCCACGACGGCACCAGGCCCATGAGGGCCGTGTTCCTCTCGGATGGGAAGATCCTGACCACGGGCTTCAGCCGCATGAGTGAAAGGCAGCTGGCCTTGTGGGATACGAATGATATGTCTGAGCCAATGGCAGTGCAGGAGATGGACACCAGTAACGGTGTTCTCCTTCCCTACTATGACCCTGACACTAACATGGTCTACCTGTGTGGAAAGGGGGACTGCACCATCCGGTACTTTGAGGTGACAGACGAGTCGCCTTATGTCCATTTTCTCAGCCTGTACAGCAGCAAAGAGCCCCAGCGAGGAGCAGGCTTTCTCAGCAAGAGGGGCGTGGACGTCAACAAGTGTGAGATCGCCAGGTTCTACAAATTGCATGAGAGGAAAGTAGAGCCCATTTCTATGACGGTACCACGGAAGTCAGACCTGTTCCAGGGGGACCTGTACCCGGACACTGCCGGTGTGGAGCCCTCTCTCCTGGCCGAGGATTGGATCGCTGGGCAGGACGCGGCACCCCTGCTAGTCTCTCTGAGCGGGGGCTATGCTGGCACCCCCTCCAAGCACAGAGACAAGCTCAGGAACAAGCCCAAGCTGCAGTCGCAGGGCTCCGGGACGGATTCTACCCCAGTCCCCCGGCAGGCCGCCTCTCCCACGGCAACCACCACCGCCAAGGAAATGGAGAGcgagggggtgggggtggtgcAGCAGAGGGTCACTCGAGCAGAAGGAGAAGGAGCATCCGATAGGGCGAGAAGAGAGGAGGAGGTGCTGAGTGAGGTGCTAGCGGAGGTGAAGGCCCTTCGTTCAGTGGTCTTGGCCCAGGGCCAGAGGATCGAGCTGTTGGAGAGGCAGCTGGTCCGCATCGAGGATGGGGATGTCTGATTGGCCGATGGGGCATCACCACTACACCCAAAGGGCATTCTTACTAAAACTCCATAGACCATAGCCTTACTAGAATCAACAGCAGTACCTTAAGCTGAGTGGGAGGATGTAGTGAAGTGTAGCTCCGTGACTAACTGTGTATATCACAGAGGGGCCGAGAATAAGGTGAACTGTTATAGTGAAGGTGTTTTGTGGGTGAATCTAAATTGTTTCCTTGTTCCCTCGCATCCTCTCCCCTCGCCTTCTCAAAACGCATTGGAGGACAAGGTCAGAGGTTCCTCCCTTCGAGACTTCTCTTCCAATGGGGTTTGAGAAGGAAGAGGGAACAAGGAAACACAATTGAGATGCACCCTACATTCTCTATAGATGCTGCTTCAGTTAGATGGCAGGTGATATAGGATGAATGGAGATCATCTGTATAAAACATCCATACTGCAGTAAGACATGTCACCAGATTTTTTTTGAAGGAGCATCGATGGTGACAGTATTTGAAGGTGTATCACTACAAAACCTAAGACATGCGGAATCAATCATAGCCTACTCACGAATCCTTATGACATCTGGCACAAAGGTCTATGTTAATTTGGTACATTTTGCAAAATGGCACATCAGTATACATTGTATGTGTGTACACCCTCAATAAATGTTACCAAGTAGATTGCCAGATCATTTACAGTTGCTGTGTTCATTGAAGCACTCGCATTGTGAATCCATTAGGGATTGTTTCATCAGGTAGTTACAGCTGCTAATCATGTCATATCAAATGTGATACTCCATTATTAATACTTATACATTTGTACATGTATGGCTTTATACGTTGGCTTTATACATTACCATCATAGGAAGCTATTACTCTAAAATCAGACCATTGGTATTATAAATATAATTGTATATGCTAATAGCGCTACGCTGTTTACAAAACTGCACTGGTTCATTGCGATTGGATTAGTTGTATTGAATTGTGCTGTACAGCGCATATATTGACATATAAAGAAAAACAGATCGGTCAATTTCCAAATAATGTTTATTTTGATATGAAGCTCTTTTTCTTACAAATGATGTGAAGGACGTGAGTTGGAGGTAGCTTAAAAAACATTCCTATCATGTATGTTTCTCTTTTTGGATGAtttttgtaattatttttttCAACCTTAGAAGGTAATACTTAATTTGTGCTCTCCAACTAAGTTGTCTTAGGTGAATGAAGCAACATGCAGTATCATTTGTCACAAAGGGTTATAAATTCCAATGACGGCTTATAACAGAGTTCAAGTTAAGTGTTACCTCAGAGAATGTGTTCCAAGCAGAACTAATGTAATATACCATTAACCATAGCAGTTGTATGAGTGTCACGAGGCACAGAACTTTAAAATGTTACAATGAAATTAgattgaacttttttttttttttttactgtgaatGATGTAATCCAAGCCAGTAGAACCTACTAGACTAATGTAGCAGCAGCTGCTCTGTTTCTATTTGAAGATGGGAAAGAAAGGGCATACGATGCTCGACTGTTGGACGGAACTGAAAAATAATAGTTCACtgttacatttagatttgtttgcATTTATCCGCAGTTTATACCTCACCCCTTTTGCAGCCTTGGGTACTGTTCacatatagcctggtcccagatctgtttaagGCTGTGTTGTCTACAATGACTACAGGAGTTGGCGAGACAGCACAAACAGTCCTGGGACCAGGTTAGTTCACATCGGGCTCATGTGTTTGTTTTATTTACTTGATTAATATTTCTGtatgctctgtcataatacacattttatgtgtgtggttgtgaacAAATAGAGGATGAAAATAACACTCCACTGTGCAAATCTTCCAATAAACACTCCTTTCTCTTTT

Function

NR:

description
coronin-1B-like

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0051015 actin filament binding molecular_function

KEGG:

id description
K13886 CORO1B_1C_6; coronin-1B/1C/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578142.2 False 3770 mRNA 0.47 11 50562901 50578867
XM_021578141.2 True 4128 mRNA 0.47 11 50562902 50578867

Neighbor

gene id symbol gene type direction distance location
LOC110500882 NA coding upstream 32710 50519018 ~ 50530191 (+)
LOC110500651 LOC106608649 coding upstream 54800 50505238 ~ 50508101 (+)
LOC110500647 NA coding upstream 68384 50489128 ~ 50494517 (+)
LOC110500645 LOC106608645 coding upstream 76800 50481842 ~ 50486101 (+)
LOC110500641 LOC106608640 coding upstream 207184 50297060 ~ 50355717 (+)
LOC110500658 LOC106608695 coding downstream 13179 50592046 ~ 50598188 (+)
trnaa-cgc-5 NA coding downstream 19676 50598543 ~ 50598614 (+)
LOC110500883 LOC106577571 coding downstream 19932 50598799 ~ 50615280 (+)
msantd1 LOC106608655 coding downstream 42416 50621283 ~ 50624034 (+)
LOC110500660 LOC106608656 coding downstream 50545 50629412 ~ 50707579 (+)
G1748657 NA non-coding upstream 25975 50534009 ~ 50536926 (+)
G1748560 NA non-coding upstream 147541 50375607 ~ 50415360 (+)
G1748578 NA non-coding upstream 155172 50402621 ~ 50407729 (+)
G1748517 NA non-coding upstream 204809 50357375 ~ 50358092 (+)
G1748499 NA non-coding upstream 285529 50276716 ~ 50277372 (+)
G1748685 NA non-coding downstream 8275 50587142 ~ 50587464 (+)
G1748703 NA non-coding downstream 38560 50617427 ~ 50617656 (+)
G1748704 NA non-coding downstream 39419 50618286 ~ 50618774 (+)
G1748706 NA non-coding downstream 41919 50620786 ~ 50621017 (+)
LOC110500625 cj011 other upstream 953321 49606099 ~ 49609714 (+)
G1747814 LOC106606817 other upstream 1116275 49445839 ~ 49446626 (+)
G1747255 NA other upstream 1585143 48977326 ~ 48977758 (+)
G1746471 LOC106608612 other upstream 2198975 48325100 ~ 48363926 (+)
G1746210 NA other upstream 2467782 48094767 ~ 48095119 (+)
LOC110500674 dulda other downstream 537578 51116362 ~ 51133346 (+)
gbrap gbrap other downstream 555222 51134089 ~ 51142008 (+)
G1749651 NA other downstream 783819 51362686 ~ 51363380 (+)
G1749650 NA other downstream 840102 51418969 ~ 51450475 (+)

Expression


Co-expression Network