msantd1 (LOC106608655)


Basic Information

Item Value
gene id msantd1
gene name LOC106608655
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 50621283 ~ 50624034 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578144.2
gagggagtggttaagagagggggagggagggagaaagaggggcctCCTCCTAGTTGCTAGGGCAACTTGACATCACAGTGACGATTTCCTCCATTTAAAAGCTTTTAACCGGATCCCTCTCCTGCCCTAGGGCCCATTTTGAGTCCTCTTTCAGCTAAGCTCGGGGGAAGGGCACAGCACAGGCAGAGCGGTGTGTGACTGTTTGCAACCACATTCCACTGACATAATGCTAGACAGCAGAGAAGGGCTTCAAACTAAACCGTTTTTGGGGCCTATTTTTGTTTACAGAACCAAAACAGGAAGAGAGTGCTTTTGAGAGGGCTTTCAAAATGGCTGCAGAGGAGAGTTTTAGTTACCTCATTCCGGGCCACAGCGAGAAGCACAGAAGGGCCCGAAACTGGACCGATGCAGAGATGAAGGGGCTTCTGTATGTATGGGAACAGAATGTCGCTGAGCTGAAGAAATGTAAGAGGAACGCCAAGATCTACGAGAAGATGGCCCAGAGGTTCTTTGAGCTCACTGGAGAACAACGCCACCGGGAGGAGATAAAGATGAAAATCACCAACATGTCTTTCCAGTACAGGCAAGTGAAAATGAAGTGCACAACCAATGGGAGCGGTGGGACACCCGACTGGCCGTACTACAAAGCAATAGAGAAGCTCCTCACCAAGACTGACGACAATGGGACTATGAACTCGTTTGAGCTCCAGTCTCCtggcccctccacctccacagaggCCTCGATGTCCCATGCAGAGGGCCTCCCCACGGGCTTCCTTCCGGAGTACACAGGCTCCTCGGACGAGATGGAGATGAGGAAGGACCTGATTGGATGGGAGAGCTCTGGCAGCCTGCACTCTGGACTTCCCTGTCCCGATTCCCACCCGGCGCCGGCCAAGAGGAAGAAAGTGCACCAGCACCTGTCTCTGAAGCGGCGGAAGCTGAAGGTGATGGAGGCCATGCTGCAGGAGCAGCGGAAGGTGAGCCGGGCGGTGGAGGAGACGTGCCGCGAGGTGCGCCGCGTCATGCACCAGCAGAACTTCCTCCAGGTGCAGAGCCTGCAGCTCCAGGAGCGCATGATGAACCTGCTGGAGAAGATGATCCAGCCACTGACGGCCCCCACGTCAGCCTGGGGTGCTGCTGCCCAGCCTGGGGTCAAAGAGCCAGGCCAGGGATGAAGGGTCCAGTGAGGGGTcaaggagggtggtggtggtcagGACTCCCTAAAAACACGCCACTTCGATACaagtgacttttcgtagcaggttaggtgaGCATTTCTGCTGACCCTAaaacctaaccctttccctaaccttaacctaattctcctaacctgctacattaattatcctaacctgctgcgtaagttctcctaacctgctacgaaaagtcataGCTGTATCGAAATTGCGTCCCGGTGGTGCTCACTATATGGCTATGCTAGAAAATAAATGCCATATGCTACATGGCTATGTGTTATATGGTACATGGCTATGTGTTATATGCTACATGGCTATGTGTTATATGGTACATGGCTATGTGTTATATGCTACATGGCTATGTGTTTTATGGTACATGGCTATGTGTTATATGCTATAATATGGCTATGCTTCACTTTTTAACAACTGATTGAGAGTAAATAATGTCAATCTCACCCTAACCTTACCCCTGACCTGAATGGTCAATggcagagagaggaaaaagcaactTGCTCATCAGTGCTGAGGCCGGTTTTGTCCTTTCTAGCATGGCTATCTAGTGGTTgctgtgagagagtgagaggtcaGGGGTGAGGGTTCAGAGGTGTATGGCTGAGGCTGCTTTAAGACAAGTTCCACCATTCATTGATCGTTTTGAGCGATATCTACAAGCTAGGAAAATACTGTGCTTATTCACATTAACAAAAGACAACGTTTGTCcacaaattctatattttaatGACAAAAGGCATGGGCATTTGGTGTTGTATCACTTATTTTCTAATGTGTGTCCTGTTATGGTGTATGCATCTTCCAACTAGCATAGCCTACTTGTTTGAAATGTATGACTGAAATAAAAACATATGTTCTGTTGTCA
>XM_021578145.2
gggagtggttaagagagggggagggagggagaaagaggggcctCCTCCTAGTTGCTAGGGCAACTTGACATCACAGTGACGATTTCCTCCATTTAAAAGCTTTTAACCGGATCCCTCTCCTGCCCTAGGGCCCATTTTGAGTCCTCTTTCAGCTAAGCTCGGGGGAAGGGCACAGCACAGGCAGAGCGGTGTGTGACTGTTTGCAACCACATTCCACTGACATAATGCTAGACAGCAGAGAAGGGCTTCAAACTAAACCGTTTTTGGGGCCTATTTTTGTTTACAGAACCAAAACAGGAAGAGAGTGCTTTTGAGAGGGCTTTCAAAATGGCTGCAGAGGAGAGTTTTAGTTACCTCATTCCGGGCCACAGCGAGAAGCACAGAAGGGCCCGAAACTGGACCGATGCAGAGATGAAGGGGCTTCTGTATGTATGGGAACAGAATGTCGCTGAGCTGAAGAAATGTAAGAGGAACGCCAAGATCTACGAGAAGATGGCCCAGAGGTTCTTTGAGCTCACTGGAGAACAACGCCACCGGGAGGAGATAAAGATGAAAATCACCAACATGTCTTTCCAGTACAGGAAAATGAAGTGCACAACCAATGGGAGCGGTGGGACACCCGACTGGCCGTACTACAAAGCAATAGAGAAGCTCCTCACCAAGACTGACGACAATGGGACTATGAACTCGTTTGAGCTCCAGTCTCCtggcccctccacctccacagaggCCTCGATGTCCCATGCAGAGGGCCTCCCCACGGGCTTCCTTCCGGAGTACACAGGCTCCTCGGACGAGATGGAGATGAGGAAGGACCTGATTGGATGGGAGAGCTCTGGCAGCCTGCACTCTGGACTTCCCTGTCCCGATTCCCACCCGGCGCCGGCCAAGAGGAAGAAAGTGCACCAGCACCTGTCTCTGAAGCGGCGGAAGCTGAAGGTGATGGAGGCCATGCTGCAGGAGCAGCGGAAGGTGAGCCGGGCGGTGGAGGAGACGTGCCGCGAGGTGCGCCGCGTCATGCACCAGCAGAACTTCCTCCAGGTGCAGAGCCTGCAGCTCCAGGAGCGCATGATGAACCTGCTGGAGAAGATGATCCAGCCACTGACGGCCCCCACGTCAGCCTGGGGTGCTGCTGCCCAGCCTGGGGTCAAAGAGCCAGGCCAGGGATGAAGGGTCCAGTGAGGGGTcaaggagggtggtggtggtcagGACTCCCTAAAAACACGCCACTTCGATACaagtgacttttcgtagcaggttaggtgaGCATTTCTGCTGACCCTAaaacctaaccctttccctaaccttaacctaattctcctaacctgctacattaattatcctaacctgctgcgtaagttctcctaacctgctacgaaaagtcataGCTGTATCGAAATTGCGTCCCGGTGGTGCTCACTATATGGCTATGCTAGAAAATAAATGCCATATGCTACATGGCTATGTGTTATATGGTACATGGCTATGTGTTATATGCTACATGGCTATGTGTTATATGGTACATGGCTATGTGTTATATGCTACATGGCTATGTGTTTTATGGTACATGGCTATGTGTTATATGCTATAATATGGCTATGCTTCACTTTTTAACAACTGATTGAGAGTAAATAATGTCAATCTCACCCTAACCTTACCCCTGACCTGAATGGTCAATggcagagagaggaaaaagcaactTGCTCATCAGTGCTGAGGCCGGTTTTGTCCTTTCTAGCATGGCTATCTAGTGGTTgctgtgagagagtgagaggtcaGGGGTGAGGGTTCAGAGGTGTATGGCTGAGGCTGCTTTAAGACAAGTTCCACCATTCATTGATCGTTTTGAGCGATATCTACAAGCTAGGAAAATACTGTGCTTATTCACATTAACAAAAGACAACGTTTGTCcacaaattctatattttaatGACAAAAGGCATGGGCATTTGGTGTTGTATCACTTATTTTCTAATGTGTGTCCTGTTATGGTGTATGCATCTTCCAACTAGCATAGCCTACTTGTTTGAAATGTATGACTGAAATAAAAACATATGTTCTGTTGTCA

Function

NR:

description
myb/SANT-like DNA-binding domain-containing protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578144.2 False 2076 mRNA 0.49 3 50621283 50624034
XM_021578145.2 True 2068 mRNA 0.49 3 50621285 50624034

Neighbor

gene id symbol gene type direction distance location
LOC110500883 LOC106577571 coding upstream 6003 50598799 ~ 50615280 (+)
trnaa-cgc-5 NA coding upstream 22669 50598543 ~ 50598614 (+)
LOC110500658 LOC106608695 coding upstream 23095 50592046 ~ 50598188 (+)
LOC110500656 LOC106608653 coding upstream 42416 50562901 ~ 50578867 (+)
LOC110500882 NA coding upstream 91092 50519018 ~ 50530191 (+)
LOC110500660 LOC106608656 coding downstream 5378 50629412 ~ 50707579 (+)
LOC110500661 hgfa coding downstream 87462 50711496 ~ 50732973 (+)
LOC110500662 LOC106608658 coding downstream 110689 50734723 ~ 50767433 (+)
LOC110500663 LOC106608696 coding downstream 218375 50842409 ~ 50844632 (+)
LOC110500664 LOC106608659 coding downstream 278752 50902786 ~ 50905298 (+)
G1748706 NA non-coding upstream 266 50620786 ~ 50621017 (+)
G1748704 NA non-coding upstream 2509 50618286 ~ 50618774 (+)
G1748703 NA non-coding upstream 3627 50617427 ~ 50617656 (+)
G1748685 NA non-coding upstream 33819 50587142 ~ 50587464 (+)
G1748728 NA non-coding downstream 86896 50710930 ~ 50711195 (+)
G1748735 NA non-coding downstream 145688 50769722 ~ 50770727 (+)
G1749267 NA non-coding downstream 152341 50776375 ~ 50776590 (+)
G1749270 NA non-coding downstream 201778 50825812 ~ 50912133 (+)
G1749434 LOC106608661 non-coding downstream 358214 50982248 ~ 50986719 (+)
LOC110500625 cj011 other upstream 1011703 49606099 ~ 49609714 (+)
G1747814 LOC106606817 other upstream 1174657 49445839 ~ 49446626 (+)
G1747255 NA other upstream 1643525 48977326 ~ 48977758 (+)
G1746471 LOC106608612 other upstream 2257357 48325100 ~ 48363926 (+)
LOC110500674 dulda other downstream 492411 51116362 ~ 51133346 (+)
gbrap gbrap other downstream 510055 51134089 ~ 51142008 (+)
G1749651 NA other downstream 738652 51362686 ~ 51363380 (+)
G1749650 NA other downstream 794935 51418969 ~ 51450475 (+)
G1750012 NA other downstream 1447566 52071600 ~ 52079002 (+)

Expression


Co-expression Network