LOC110500663 (LOC106608696)


Basic Information

Item Value
gene id LOC110500663
gene name LOC106608696
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 50842409 ~ 50844632 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578152.2
TTGCCTGTCATGCTATAACAGCATGCATGTACAAGGCAAGGTGGCATGATCGTTTAGTCAATTAACCAGATATATATTGGGTAATGATTTGCCGTCTAATCCACGAGACATGCATTCCGTCAACATTGTGCTCATTTTCATTTTGGCAATGAATGGACTCTACATGCATAAAGTGAATGTCTTTCCCTGAACCAACCATTCTGGAATAAAAAGAAATACATGGACGGGATGGATTCGTTTAACTCAAGCGGAGTTGACACGTTCCCCGTTGTCAACTTAAATTCCTCATCAGAAAGTCCATATTTTTCGGCTACAATAGCGAGTCTTGCAGCACTTGTAAGTTTTCTTATTTTGTTTACAGTGGTCGGGAACGTTCTGGTTGTAATTGCGGTATTAACAAGCCGGGCAATGAAAGCTCCCCAGAATCTGTTTTTGGTTTCGTTAGCCACCGCAGACATTCTGGTTGCCACTTTGGTGATGCCATTTTCTCTGGCAAACGAACTTATGGGCTACTGGTATTTCGGCAGAGTTTGGTGTGGAATTTACCTCGCTTTAGATGTATTATTTTGCACTTCGTCCATCGTCCATCTGTGCGCAATCAGTTTGGACCGCTACTGGTCTGTTACGCAAGCTGTTGAATATAATCTCAAACGGACTCCTAAACGAGTGAAGTGTATTATCGTCATTGTATGGCTTATATCTGCCATGATATCTTCTCCTCCGTTAATATCAATAGACAAAAACAATGATAACTCTCAGTACCCAGGGTGTGAGCTGAACAATGACACTTGGTACATCCTCTCCTCTAGCATTGCGTCATTCTTTGCGCCTTGCCTAATCATGATATTAGTGTATATTAGAATATACCAAGTGGCCAAGACCAGGACCAGGGGCATGTCGGAGAAAAAACATGGTCCAGGTGAACATACAATGACTGAGAATGGGCTAAGCAAAGCTGCCTTGTGCAAAATCAACGGGGACAGAGAGACCGGGCACTGCCAGTGCCCACCCACGCCCAGCATGATGACCACAGAGGTTCATGATGAGGGGGACCTGGAGGAGAGCTCCTCCTCAGAGGACAAAGGTCACACCAAACCTCAGGACCTGAACCATAAGAGGGTCAAGCGGGCCAGCCGGAAGAACAGTGCCATCTCCAAACACTCCAGCCGGATCTCTAGAGCCAGCAACAAATCCATGGACCTGTTCGCctccaggaggaagaggaggaggagctctGTGTCCATGAAAAAGGTCTCCCAGGCCAGGGAGAAGAGGTTCACCTTTGTGCTGGCTGTAGTCATGGGGGTATTTGTGGTGTGCTGGTTCCCATTCTTCTTCAGCTACTGCCTGCACGGAGTGTGCGGGGACCCCTGTAAGATCCCCGATCCCCTCTTTAAATTCTTCTTCTGGATTGGTTACTGCAACAGCTCACTCAACCCCGCCATCTACACCATCTTCAACCAGGATTTCCGACGCGCCTTTCAGAAAATCCTTTGCAAGTCGTGGAAAAAATCCTTCTAGATATATGTGATAATGGGAGGGACAAGCCAGGACTAAATATGCCCTGAGATGACCATGACAATCTCAATATGGACATATGAAATCTACCATGGAATATTCATATGAAAGAAGCCTATtttttgtattcaaccatatgaACAATGCAACGTGCACACTGTACTTACAGTGGTCATACACATTGTCATGCTGTAACTCAATTGAGAGAGCATCATTCTGAACTACGCCTTCATATTCCCTCACAGGCAACTCTTGTGCTCTCATTACCCAACATATTTATGTTACTGGCCTGCATATTTGCCATTCACGTTCAGTGTGTGCATAGTGGTTCCCAGAACAAGATGTTCTGAAGTGTATCGCAAGGCTTTAACTCAATGTCACATTAGATATCTGGTACTCCTGAGTCCTATACAACCAAAGTAACACAATTTCCAGGCTAATCATGCTAATGCGAAAACACAGGGGAACTAGCCGGGCGCATCAGCAGTCTAATCCACTATGTTGACTTGTCATGGGTAATGATTTCCAAGTGGACCCTAGGGATTACAGACAAATGGTTGAGGTGTTGAGGGCTGAGTATATGTTTTTAAAACGTGGGCTACGGTTGTTCCTTTTATTTATAATCGTAAGAAAGATCTGTATTTTTCACCCTGGATGCTGATGAATATATACCTAAGAATAAAACATAAAGTATTTATTTGAAGTA

Function

NR:

description
alpha-2 adrenergic receptor-like

GO:

id name namespace
GO:0019229 regulation of vasoconstriction biological_process
GO:0007194 negative regulation of adenylate cyclase activity biological_process
GO:0006940 regulation of smooth muscle contraction biological_process
GO:0030168 platelet activation biological_process
GO:0071875 adrenergic receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004938 alpha2-adrenergic receptor activity molecular_function

KEGG:

id description
K04140 ADRA2C; adrenergic receptor alpha-2C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578152.2 True 2224 mRNA 0.44 1 50842409 50844632

Neighbor

gene id symbol gene type direction distance location
LOC110500662 LOC106608658 coding upstream 74976 50734723 ~ 50767433 (+)
LOC110500661 hgfa coding upstream 109436 50711496 ~ 50732973 (+)
LOC110500660 LOC106608656 coding upstream 134830 50629412 ~ 50707579 (+)
msantd1 LOC106608655 coding upstream 218375 50621283 ~ 50624034 (+)
LOC110500883 LOC106577571 coding upstream 227129 50598799 ~ 50615280 (+)
LOC110500664 LOC106608659 coding downstream 58154 50902786 ~ 50905298 (+)
LOC110500665 LOC106608660 coding downstream 61848 50906480 ~ 50909607 (+)
LOC110500669 LOC106608664 coding downstream 208754 51053386 ~ 51067912 (+)
LOC110500672 NA coding downstream 255368 51100000 ~ 51101654 (+)
elp5 elp5 coding downstream 263098 51107730 ~ 51110207 (+)
G1749267 NA non-coding upstream 65819 50776375 ~ 50776590 (+)
G1748735 NA non-coding upstream 71682 50769722 ~ 50770727 (+)
G1748728 NA non-coding upstream 131214 50710930 ~ 50711195 (+)
G1748706 NA non-coding upstream 221392 50620786 ~ 50621017 (+)
G1748704 NA non-coding upstream 223635 50618286 ~ 50618774 (+)
G1749434 LOC106608661 non-coding downstream 137616 50982248 ~ 50986719 (+)
G1749436 LOC106608661 non-coding downstream 146110 50990742 ~ 50993138 (+)
G1749470 NA non-coding downstream 190938 51035570 ~ 51036032 (+)
G1749486 NA non-coding downstream 210610 51055242 ~ 51055457 (+)
G1749498 NA non-coding downstream 240937 51085569 ~ 51085830 (+)
LOC110500625 cj011 other upstream 1232829 49606099 ~ 49609714 (+)
G1747814 LOC106606817 other upstream 1395783 49445839 ~ 49446626 (+)
G1747255 NA other upstream 1864651 48977326 ~ 48977758 (+)
G1746471 LOC106608612 other upstream 2478483 48325100 ~ 48363926 (+)
LOC110500674 dulda other downstream 271813 51116362 ~ 51133346 (+)
gbrap gbrap other downstream 289457 51134089 ~ 51142008 (+)
G1749651 NA other downstream 518054 51362686 ~ 51363380 (+)
G1749650 NA other downstream 574337 51418969 ~ 51450475 (+)
G1750012 NA other downstream 1226968 52071600 ~ 52079002 (+)

Expression


Co-expression Network