elp5 (elp5)


Basic Information

Item Value
gene id elp5
gene name elp5
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 51107730 ~ 51110207 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578164.2
AAGCGCGAAAGGGGATACAAACCGGATGCTTATCAAGCATTGAGTTTTCCCTGGCACGAGCTGCGTGTCTTGTACATGGAATACAATCGTACAACTTCATTATTCTCCTAAACGCAAATTTCGGTGCTCCATCTATGTCCAGCTGACAAACGCTTGTCATGAGAATTGTCGTCAGATTTGTAGGGCAGCATCAATATTTGAAGGCGGATGAAGAGGAATCACACGTAATAACCGACACTCTTGCTACAACGTTAGCTAACAATCTGGGCAGCTAGGAAGCCTGTAACGTTAATATGTTGTTGGAAGTTTTGCAAGGAACAGAAGCGGGGGGATTCATTTTGATACAAGATTCTGTGAATTACTGTGGTCGACACCTCCTGAAAAGCTGCATCAATACAGCACTTAAACGGGAAGAAGTGGTCCATGTATTGGGGTTTGAAGTTAGTCAAGAGGAACTCAATGATGGACTCGACAGAACATCTGCACAGAGGCTGCACTTTCACAATGCCTACTCTGACCCTCTCGGCTGGACCGGTAATTCACCGTTTACGGTCCACCAGTTTACCCTAGAGGACATCAGCACTCTTCTCAAACAAACACCTCAGGCCAAAGCAGTGACACTTGTCATTGACTCTCTGTCATGGATTTTGAGGCATCACGACCCTGCTGCTATCTGCCAGAAACTTCAGGCTCTCAAAAAAGGTGGAGTTGTGAGAGCTGTAATTGGTCTGCTGCACTCAGACCTGCATCAGCGAGGCACTGTGGGAAGCATATGCCACTTGGCTACCTCAGTCATCACTGTGGCCCCAGGGACCAGAGGACTAGGGGCCTTCGCCAAAATAACAAGACGCACCAAGTCGGGCAAGCTTATGCAAGATGAGGAGATATTCAGCATCAATGAGGACCTGACAGTTACAATACAGAGCAAACGCAGTCATCCTGGAAGCACACCGATGAATACAGACGAATCTGAGGTGGATCCGACAGCCAACCTGACCTTTAACCTGCGCCTGtctgatacacagagagaggccaAAGAAAAACTGCCGCTTCCCTTCGTCTTCAGTAAAGAGAAGAAGTCAGCACTTCTGCACCCGGGCACCGGTTCAGGACGGATCCTTTACGAGCCTGATGCCAATGATGATTATGACCAGGAGGATCCTGATGACGACCTTGATGTCTAGAGGACAGGCTACTAGCCATGTAGAGCACAGCTCCTTGCAGTTAATGCCACTTTTGGACATGTCTAGTCAGACCCAACACATTAGCCACATGAACTCACATAGACTTATGAATAATGATAAAATAGTTCCTGTAGTTTGTTGCTACTTTTAGGTCTTTAAAGGAGCAACTGAGTTATTGTGATGGCCCTCAACGATGCAAGTGTATACCAACTTAATAATGGTCAATAAAAGCTTGGCCCTGGTCTACTCTTAAAAACAATCAACATCACTGGCATGGAATAGTCAGCAATTAATATACATGAATACAACTTGAATAGCTTGGCTGGACTTCTACGTCATCATCAATGATGACAATATTAAACAACACAATGCTTAttggagtggcaggtagcctagtggttagagcgttgggccagtaatgcaaaggttgctggattgaatccccgagctgccaAAGTAAACAtttatcgttctgcccctgaacaaggcagtta

Function

symbol description
elp5 Predicted to contribute to tRNA binding activity. Predicted to be involved in positive regulation of cell migration and tRNA modification. Predicted to act upstream of or within tRNA wobble uridine modification. Predicted to be located in cytoplasm. Predicted to be part of elongator holoenzyme complex. Predicted to be active in cytosol and nucleus. Orthologous to human ELP5 (elongator acetyltransferase complex subunit 5).

NR:

description
elongator complex protein 5

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG:

id description
K11376 ELP5, IKI1; elongator complex protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578164.2 True 1678 mRNA 0.46 8 51107730 51110207

Neighbor

gene id symbol gene type direction distance location
LOC110500672 NA coding upstream 6076 51100000 ~ 51101654 (+)
LOC110500669 LOC106608664 coding upstream 39818 51053386 ~ 51067912 (+)
LOC110500665 LOC106608660 coding upstream 198123 50906480 ~ 50909607 (+)
LOC110500664 LOC106608659 coding upstream 202432 50902786 ~ 50905298 (+)
LOC110500663 LOC106608696 coding upstream 263098 50842409 ~ 50844632 (+)
LOC110500674 dulda coding downstream 6155 51116362 ~ 51133346 (+)
gbrap gbrap coding downstream 24291 51134089 ~ 51142008 (+)
LOC110500675 LOC106608669 coding downstream 35073 51145280 ~ 51153770 (+)
LOC110500677 LOC106608671 coding downstream 59109 51169316 ~ 51174187 (+)
LOC110500680 LOC106608673 coding downstream 91836 51202043 ~ 51216929 (+)
G1749498 NA non-coding upstream 21900 51085569 ~ 51085830 (+)
G1749486 NA non-coding upstream 52273 51055242 ~ 51055457 (+)
G1749470 NA non-coding upstream 71698 51035570 ~ 51036032 (+)
G1749436 LOC106608661 non-coding upstream 114592 50990742 ~ 50993138 (+)
G1749434 LOC106608661 non-coding upstream 121011 50982248 ~ 50986719 (+)
G1749521 NA non-coding downstream 32778 51142985 ~ 51143430 (+)
G1749536 NA non-coding downstream 33511 51143718 ~ 51144006 (+)
G1749540 NA non-coding downstream 56142 51166349 ~ 51166714 (+)
G1749567 NA non-coding downstream 90453 51200660 ~ 51200930 (+)
G1749580 NA non-coding downstream 129064 51239271 ~ 51239603 (+)
LOC110500883 LOC106577571 other upstream 504453 50598799 ~ 50615280 (+)
LOC110500625 cj011 other upstream 1498150 49606099 ~ 49609714 (+)
G1747814 LOC106606817 other upstream 1661104 49445839 ~ 49446626 (+)
G1747255 NA other upstream 2129972 48977326 ~ 48977758 (+)
G1746471 LOC106608612 other upstream 2743804 48325100 ~ 48363926 (+)
G1749651 NA other downstream 252479 51362686 ~ 51363380 (+)
G1749650 NA other downstream 308762 51418969 ~ 51450475 (+)
G1750012 NA other downstream 961393 52071600 ~ 52079002 (+)

Expression


Co-expression Network