LOC110500677 (LOC106608671)


Basic Information

Item Value
gene id LOC110500677
gene name LOC106608671
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 51169316 ~ 51174187 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578172.2
ATTGCTGGATTGGCTATTACGATGCCAATGAGGGCGCGGTTAATATCAGGAATCCCGGGAGGTTGTCTGGATAAAAAGTTTGCGGTGGTGATCTGAGCTAAGTTAAGACAAGAGGGGGACATTGTTGTGAATCTGTATCCGTGCGAGTATGACCGACGCAGAAGAGCAGAGCGCCCCATCGTCGGCACCAGTGGAAGAACCGCCACAGCTGGAGAGAAAAATTATAGCCTCTGCAGTCCAAGGCACGGTGAAATGGTTCAACGTGCGCAATGGCTATGGCTTTATCAACAGaaaCGACACCAAAGAAGATGTCTTTGTTCATCAGACTGCCATCAAGAACAACAACCCCAGGAAGTTCCTTCGCAGTGTTGGAGATGGGGAGGTGGTGGAGTTTGATGTGGTCGAGGCCGCCAAGGTAGGTAAACCTggCTCTGAGGCAGCCAACGTGACCGGGCCTAGCGGGGTTCCTGTGAAAGGCAGCCGCTATGCGCCCAACAAACGTCGCTTCCGCCGCCGCCGCACCTCCCCTCGCAGCCCTCAGCCCGATGATAAGGGTGACGGCACCTCTGTCCCCACCTCGGAAGGCGAAGGGGAGAATGGCAGAGGGGAGAATGGTGGTGAACGACCTGCACCGCGACGACGCAGGCCCCGCAGACCCAGACGGGAAGGACGAGAGGGCGAGTCAGGGGAACAGGAGGGAGCAGTGGAAGGCGACCAGCAGAGGCCACCACCGCGCAGGTTCAGGCCCCAGTACCGCAGGCCATTCCGTCCTCGCCCACCCCCTGGGGAGGGTAAGCAGGATGGCAGCGCCCCCACCGAGAGGCAGGAAGGCCAGTTAGCGGACGGCCAGAAAGAGGTGGAGGCCCAGCAGACAAACGGGAAGCAGGCCAATGAAGACGGCCAGAAACCCCGCCGACAGTTCAGCCGCCGCAGGCAGAGGAACTCCGAGTCTAACACAGTCTCTAAAGATGGGACAGAGAAGCCAGCCTTGGGGCCTAGCACCACCGCTCAGACCTCCAAGCCAGCTGACGTCAAGGCCTCCCCCAAGTCCTCCCCCAAAACCATCCACAAATCACCAGAGGCACCTGCCACGACAGTTCCCGTGGCGGCAGAATGACGCCTCTGAGCAGATGGTGTCACGTGACCCCAGGCAAGCGGTGGGACTCCACACTAAACTGATGCAACCTTTCGGTGGTTGGTTGGAGGAGGGGTTTGGGTTACGCCTATTGCACTACTACATTGCACTACAAAACCGCATCGTAGGCCATATTGTAGCTGATGTCACTAGTATGTGACCATTTAGTTCCTTAAGTAATTAGTTATTTTTCTACATGGGTTTTTAGAGGAATTACATAAGTCTTTTGATGGGATGGAAAGCACCAGGTGGATTTAGCTTTTCCTGTTTCCTTTATAATTTTGGGACATTCTGGCATTCAATGAAAGCCCACCTATATTACAGGTGTAATTCGGTTGCCAATTGAAGACTCAAATCCTGTGGGACCCACTGCTTGTTTGAGGTTGGAAGTTTTAAGTTGTGGCATTATTTTGTGTTCAGTTTTTGTTTTAATGTCGGGCTCTCTCCTCTTGGCATCCTGTTGGTCTCGCTCTGTAGGTCCTATGGACCGTTAGACGCAGTCCCCCATCTAACAGGACATACCCACCTGACTTGTCTACACACTGCGtatgggagaaggggaggagaggaagggatatAGTGGGTTGTCTGTGTTTACAATTGAGAAAATACTCATTTTTAGAAGAAAGTGTGAACCTGCTTGGATGCCCATTTAAACCACAAAACCCACAACTTCTTTAATTGACTGAGAATGGGCACAAGCATTAGAGTGGCTCCAGCCTCTATTTAAGTTTGATAACATGAAAGCAAAGCAGGTGTGAGTGTAGTGGTAGTCTGGGACCTGACCCCCACCCCAGATTCTAAAACATGCTGCTGCCCCCCCCCTCATAAAGGCATGAGGCTGGTTTAAATAAATATTGTAATTGTAATTTTTTGGTTTTGTATGTGCTTGTTTGGAGGGGATTATGTGCAATGTCAGTATCAGAATGTCTATAAAAATCATGTTTGCAAAGACTACAATGCATTTCTTTGTACTGAGTAATGTGACCATACAATGTAAAATGTCTTGAATCACATTTAGTGGGATGAAACTGAAGTTGGTCATTTAATTTCTTCAACTCAAGCTCCAATAACAACATTTCATCTAAACTA
>XM_021578173.2
TTGGCTATTACGATGCCAATGAGGGCGCGGTTAATATCAGGAATCCCGGGAGGTTGTCTGGATAAAAAGTTTGCGGTGGTGATCTGAGCTAAGTTAAGACAAGAGGGGGACATTGTTGTGAATCTGTATCCGTGCGAGTATGACCGACGCAGAAGAGCAGAGCGCCCCATCGTCGGCACCAGTGGAAGAACCGCCACAGCTGGAGAGAAAAATTATAGCCTCTGCAGTCCAAGGCACGGTGAAATGGTTCAACGTGCGCAATGGCTATGGCTTTATCAACAGaaaCGACACCAAAGAAGATGTCTTTGTTCATCAGACTGCCATCAAGAACAACAACCCCAGGAAGTTCCTTCGCAGTGTTGGAGATGGGGAGGTGGTGGAGTTTGATGTGGTCGAGGCCGCCAAGggCTCTGAGGCAGCCAACGTGACCGGGCCTAGCGGGGTTCCTGTGAAAGGCAGCCGCTATGCGCCCAACAAACGTCGCTTCCGCCGCCGCCGCACCTCCCCTCGCAGCCCTCAGCCCGATGATAAGGGTGACGGCACCTCTGTCCCCACCTCGGAAGGCGAAGGGGAGAATGGCAGAGGGGAGAATGGTGGTGAACGACCTGCACCGCGACGACGCAGGCCCCGCAGACCCAGACGGGAAGGACGAGAGGGCGAGTCAGGGGAACAGGAGGGAGCAGTGGAAGGCGACCAGCAGAGGCCACCACCGCGCAGGTTCAGGCCCCAGTACCGCAGGCCATTCCGTCCTCGCCCACCCCCTGGGGAGGGTAAGCAGGATGGCAGCGCCCCCACCGAGAGGCAGGAAGGCCAGTTAGCGGACGGCCAGAAAGAGGTGGAGGCCCAGCAGACAAACGGGAAGCAGGCCAATGAAGACGGCCAGAAACCCCGCCGACAGTTCAGCCGCCGCAGGCAGAGGAACTCCGAGTCTAACACAGTCTCTAAAGATGGGACAGAGAAGCCAGCCTTGGGGCCTAGCACCACCGCTCAGACCTCCAAGCCAGCTGACGTCAAGGCCTCCCCCAAGTCCTCCCCCAAAACCATCCACAAATCACCAGAGGCACCTGCCACGACAGTTCCCGTGGCGGCAGAATGACGCCTCTGAGCAGATGGTGTCACGTGACCCCAGGCAAGCGGTGGGACTCCACACTAAACTGATGCAACCTTTCGGTGGTTGGTTGGAGGAGGGGTTTGGGTTACGCCTATTGCACTACTACATTGCACTACAAAACCGCATCGTAGGCCATATTGTAGCTGATGTCACTAGTATGTGACCATTTAGTTCCTTAAGTAATTAGTTATTTTTCTACATGGGTTTTTAGAGGAATTACATAAGTCTTTTGATGGGATGGAAAGCACCAGGTGGATTTAGCTTTTCCTGTTTCCTTTATAATTTTGGGACATTCTGGCATTCAATGAAAGCCCACCTATATTACAGGTGTAATTCGGTTGCCAATTGAAGACTCAAATCCTGTGGGACCCACTGCTTGTTTGAGGTTGGAAGTTTTAAGTTGTGGCATTATTTTGTGTTCAGTTTTTGTTTTAATGTCGGGCTCTCTCCTCTTGGCATCCTGTTGGTCTCGCTCTGTAGGTCCTATGGACCGTTAGACGCAGTCCCCCATCTAACAGGACATACCCACCTGACTTGTCTACACACTGCGtatgggagaaggggaggagaggaagggatatAGTGGGTTGTCTGTGTTTACAATTGAGAAAATACTCATTTTTAGAAGAAAGTGTGAACCTGCTTGGATGCCCATTTAAACCACAAAACCCACAACTTCTTTAATTGACTGAGAATGGGCACAAGCATTAGAGTGGCTCCAGCCTCTATTTAAGTTTGATAACATGAAAGCAAAGCAGGTGTGAGTGTAGTGGTAGTCTGGGACCTGACCCCCACCCCAGATTCTAAAACATGCTGCTGCCCCCCCCCTCATAAAGGCATGAGGCTGGTTTAAATAAATATTGTAATTGTAATTTTTTGGTTTTGTATGTGCTTGTTTGGAGGGGATTATGTGCAATGTCAGTATCAGAATGTCTATAAAAATCATGTTTGCAAAGACTACAATGCATTTCTTTGTACTGAGTAATGTGACCATACAATGTAAAATGTCTTGAATCACATTTAGTGGGATGAAACTGAAGTTGGTCATTTAATTTCTTCAACTCAAGCTCCAATAACAACATTTCATCTAAACTA

Function

NR:

description
Y-box-binding protein 2-A-like isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578172.2 False 2227 mRNA 0.51 9 51169316 51174187
XM_021578173.2 True 2206 mRNA 0.51 9 51169325 51174187

Neighbor

gene id symbol gene type direction distance location
LOC110500675 LOC106608669 coding upstream 15546 51145280 ~ 51153770 (+)
gbrap gbrap coding upstream 27419 51134089 ~ 51142008 (+)
LOC110500674 dulda coding upstream 35970 51116362 ~ 51133346 (+)
elp5 elp5 coding upstream 59109 51107730 ~ 51110207 (+)
LOC110500672 NA coding upstream 67662 51100000 ~ 51101654 (+)
LOC110500680 LOC106608673 coding downstream 27856 51202043 ~ 51216929 (+)
LOC110500679 LOC106608674 coding downstream 43797 51217984 ~ 51230820 (+)
LOC110500685 NA coding downstream 124692 51298879 ~ 51301196 (+)
LOC110500686 LOC106608678 coding downstream 142627 51316814 ~ 51332192 (+)
LOC110500687 LOC106608680 coding downstream 177126 51350884 ~ 51361534 (+)
G1749540 NA non-coding upstream 2602 51166349 ~ 51166714 (+)
G1749536 NA non-coding upstream 25310 51143718 ~ 51144006 (+)
G1749521 NA non-coding upstream 25886 51142985 ~ 51143430 (+)
G1749498 NA non-coding upstream 83486 51085569 ~ 51085830 (+)
G1749486 NA non-coding upstream 113859 51055242 ~ 51055457 (+)
G1749567 NA non-coding downstream 26473 51200660 ~ 51200930 (+)
G1749580 NA non-coding downstream 65084 51239271 ~ 51239603 (+)
G1749582 NA non-coding downstream 66679 51240866 ~ 51241130 (+)
G1749584 NA non-coding downstream 69418 51243605 ~ 51246308 (+)
LOC110500883 LOC106577571 other upstream 566039 50598799 ~ 50615280 (+)
LOC110500625 cj011 other upstream 1559736 49606099 ~ 49609714 (+)
G1747814 LOC106606817 other upstream 1722690 49445839 ~ 49446626 (+)
G1749651 NA other downstream 188499 51362686 ~ 51363380 (+)
G1749650 NA other downstream 244782 51418969 ~ 51450475 (+)
G1750012 NA other downstream 897413 52071600 ~ 52079002 (+)
G1750030 LOC106608688 other downstream 920522 52094709 ~ 52095105 (+)
G1750050 NA other downstream 1017013 52191200 ~ 52197007 (+)

Expression


Co-expression Network