LOC110500680 (LOC106608673)


Basic Information

Item Value
gene id LOC110500680
gene name LOC106608673
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 51202043 ~ 51216929 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578177.2
TGAACTCTGCACAGCCCCTCCCCTATTCTGGTTATTGGGGAAATCCCCGAAATGCACGCTTTTCACTGAAacaaaatattttgctttatAGCTGCTACGGATTGCATTGACAGAGAACCAAGGTGCTGCAAGAAAAGATTCATAAACGGGAGGCGAGATCCTATCGCCTTCCTCCCTCCTTGTGTCCCTGTGTCCAATCCTCTCCTCCCAACCGGTCTTGTGAACTGTCGAGAAAGTGAACGGATACAGGATGGAAGAGCTCAGCCCCCCCCTGGGCCAATGTTCCTTCCAGCAGATTTGGGAGAGCAATATGACACCTCAGGGGCCCAGTATTCCACTGGTTGCTACTGAAAACTGGTCTGACCTGGATGTCTCGATAAATGGCATCCACTTACCTCCCTCACAGCTCCTTCCCGACGCGACTCTCCACAAGGTCTTTGACGAGGTCCTGTTTGAACTGCTGGAGCCCCCGGTTGTGGAGCCCTCTGTGTCAAACCTGGACAGCGTGCCTCCCCCCGCCTCCACAGTCCCCTCCACCAACGACTACCCTGGGAAGCACGGCTTCCAGCTGCGATTCCAAAAGTCGGGTACCGCCAAGTCTGTCACTTCCACTTATTCTGTGCAGCTGAACAAGCTGTACTGCCAGCTGGCTAAGACGTGCCCTGTGGAGGTGTTGATGGCCATGGATCCCCCGCCAGGAGCCATCCTCAGGGCCACCGCTATCTACAAGAAGTCTGAGCATGTCTCTGAGGTCGTCCGGCGCTGCCCCCACCACCAGAGCGCCTCAGATAACAATGAAGgcGTGGTCCACCGCAGTCACTTGATTAGGGTGGAGGGGAGCCAGTGGGCTCAATACCTGGAGGATGGAAACACCAAGCGTCAAAGTGTGCTACTGCCCTATGAGCCTCCTCAGCTGGGCTCTGAAACGACTACTGTTCTCCTGAACTTCATGTGTAACTCCAGTTGCATGGGTGGTATGAACAGACGGCCCATCCTCACCATCCTGACCCTGGAGACCCAGGAGGGTCAGGTTTTGGGTCGCCGTTGTTTCGAGGTCCGTGTGTGTGCCTGTCCCGGCCGGGACCGCAAGACCGAAGAAGAGAACACAAACAAACTGAACGGGACCAAGACCACCAACGGCTCCAAGAGAAGTAAGACTCGGGCCACGTCTCAACCCTCGTCTCCTATGTCATTGTTGaccttgtctcctctctcctcagagtCCCAACAGGCCCTGCCCCCTCCAGGGACCAGCAAGAAGATCAAGAATGGCTCCAGCACCGAGGATGAAGACAAGGACAATGTATTTTTGTTGCAGgTCCGTGGCCGAGAGCACTATGAGTGGCTCAAGAAGATCAATGACAGTCTGGAGCTGATGGACCACATTCCTCCCGCTGAGCAGGAGAAATACAAGAAGAAAGGTTCCGCAAAGATCCTCAAGCAAGAAGCAATGGCCCCGAAGAGCGGAAAGCGGCTGCTTACAAAGGAAGACAGGAGCGACTCGGACTAAGGCCAGGACACGTCGGTCCTTATTCTCCTGTCTATTCCAGACCAACATTAAGTTGCGACTCCCAAGTTAAATGCCCAATACCAAACCCTAGTCCCTACATGTAGGCACTTCTGAAAGGATAGATATTAGCAAGATAGTAATAGCTCCACCTAGACAGCCATACGCTGGACCCAGAAAGGGGTCAATAGCGACGGACcaacattttaataaatgttGTCATATGAACACgcaagacatggcaaaatgtgtagaattgcaggaaattagcttcaaAACAGTTCAAACTGTGTAAaaagttgttttattttttattgtattgttttttttatatggcGGTAAATGACTGTCCATCCGGAGCTTTTAACAGCTAGGAAAATTGTGACcggaccttctcaaatagtacAAGTACCATGTTGGGATTTTCACCATATTTCGGATACCAGTCCAACAATTTCAGTATAACACAAACTGCGTAAGTGTATGGCCTAGGGTTTGGTTTAGAATTAGCTAGGTAAGCTAAGACCCCTCCTCCCACTGCCTTAACCATCTGCTGGgacttcctcctcctcacctgcCCCCCAAACAGCACTTTAGCTTGTGCTTTTATGATTTGGACCAATTAAATCAAGTATTCATATCTTGACCTGCCTAGCCACGATGCTTTGTTACCAGTTAATTGGCCAGTTGCCTGTTAGTATTTTTATACCTGTTGAACATAACTGCTGTTATCCCTCCCCCTGAAACCTTCTTTTGCCCCTTTTTTTTTAACTTGTTGCTCTGGTTAGAATGTTTTttcattgttaaaaaaaaaatacatttgagttCTCTCTCTTGTGAAGCGGTCTGATACTATGATTATGATACACTTAGCACATGTATATTTGTTTAATTTATCGTTCTCTGATGGAAACTCTTTTTGATGTAATTCGGTGCTGAGACATGAGGCTCTATTTTGTTTAGTGGGAAAGGAGACATTTCAGGGAACTTTTAAAATCAATTAAAGCAATTTCTTAAGTAATACTT
>XM_021578178.2
TGAACTCTGCACAGCCCCTCCCCTATTCTGGTTATTGGGGAAATCCCCGAAATGCACGCTTTTCACTGAAacaaaatattttgctttatAGCTGCTACGGATTGCATTGACAGAGAACCAAGGTGCTGCAAGAAAAGATTCATAAACGGGAGGCGAGATCCTATCGCCTTCCTCCCTCCTTGTGTCCCTGTGTCCAATCCTCTCCTCCCAACCGGTCTTGTGAACTGTCGAGAAAGTGAACGGATACAGGATGGAAGAGCTCAGCCCCCCCCTGGGCCAATGTTCCTTCCAGCAGATTTGGGAGAGCAATATGACACCTCAGGGGCCCAGTATTCCACTGGTTGCTACTGAAAACTGGTCTGACCTGGATGTCTCGCTCCTTCCCGACGCGACTCTCCACAAGGTCTTTGACGAGGTCCTGTTTGAACTGCTGGAGCCCCCGGTTGTGGAGCCCTCTGTGTCAAACCTGGACAGCGTGCCTCCCCCCGCCTCCACAGTCCCCTCCACCAACGACTACCCTGGGAAGCACGGCTTCCAGCTGCGATTCCAAAAGTCGGGTACCGCCAAGTCTGTCACTTCCACTTATTCTGTGCAGCTGAACAAGCTGTACTGCCAGCTGGCTAAGACGTGCCCTGTGGAGGTGTTGATGGCCATGGATCCCCCGCCAGGAGCCATCCTCAGGGCCACCGCTATCTACAAGAAGTCTGAGCATGTCTCTGAGGTCGTCCGGCGCTGCCCCCACCACCAGAGCGCCTCAGATAACAATGAAGgcGTGGTCCACCGCAGTCACTTGATTAGGGTGGAGGGGAGCCAGTGGGCTCAATACCTGGAGGATGGAAACACCAAGCGTCAAAGTGTGCTACTGCCCTATGAGCCTCCTCAGCTGGGCTCTGAAACGACTACTGTTCTCCTGAACTTCATGTGTAACTCCAGTTGCATGGGTGGTATGAACAGACGGCCCATCCTCACCATCCTGACCCTGGAGACCCAGGAGGGTCAGGTTTTGGGTCGCCGTTGTTTCGAGGTCCGTGTGTGTGCCTGTCCCGGCCGGGACCGCAAGACCGAAGAAGAGAACACAAACAAACTGAACGGGACCAAGACCACCAACGGCTCCAAGAGAAGTAAGACTCGGGCCACGTCTCAACCCTCGTCTCCTATGTCATTGTTGaccttgtctcctctctcctcagagtCCCAACAGGCCCTGCCCCCTCCAGGGACCAGCAAGAAGATCAAGAATGGCTCCAGCACCGAGGATGAAGACAAGGACAATGTATTTTTGTTGCAGgTCCGTGGCCGAGAGCACTATGAGTGGCTCAAGAAGATCAATGACAGTCTGGAGCTGATGGACCACATTCCTCCCGCTGAGCAGGAGAAATACAAGAAGAAAGGTTCCGCAAAGATCCTCAAGCAAGAAGCAATGGCCCCGAAGAGCGGAAAGCGGCTGCTTACAAAGGAAGACAGGAGCGACTCGGACTAAGGCCAGGACACGTCGGTCCTTATTCTCCTGTCTATTCCAGACCAACATTAAGTTGCGACTCCCAAGTTAAATGCCCAATACCAAACCCTAGTCCCTACATGTAGGCACTTCTGAAAGGATAGATATTAGCAAGATAGTAATAGCTCCACCTAGACAGCCATACGCTGGACCCAGAAAGGGGTCAATAGCGACGGACcaacattttaataaatgttGTCATATGAACACgcaagacatggcaaaatgtgtagaattgcaggaaattagcttcaaAACAGTTCAAACTGTGTAAaaagttgttttattttttattgtattgttttttttatatggcGGTAAATGACTGTCCATCCGGAGCTTTTAACAGCTAGGAAAATTGTGACcggaccttctcaaatagtacAAGTACCATGTTGGGATTTTCACCATATTTCGGATACCAGTCCAACAATTTCAGTATAACACAAACTGCGTAAGTGTATGGCCTAGGGTTTGGTTTAGAATTAGCTAGGTAAGCTAAGACCCCTCCTCCCACTGCCTTAACCATCTGCTGGgacttcctcctcctcacctgcCCCCCAAACAGCACTTTAGCTTGTGCTTTTATGATTTGGACCAATTAAATCAAGTATTCATATCTTGACCTGCCTAGCCACGATGCTTTGTTACCAGTTAATTGGCCAGTTGCCTGTTAGTATTTTTATACCTGTTGAACATAACTGCTGTTATCCCTCCCCCTGAAACCTTCTTTTGCCCCTTTTTTTTTAACTTGTTGCTCTGGTTAGAATGTTTTttcattgttaaaaaaaaaatacatttgagttCTCTCTCTTGTGAAGCGGTCTGATACTATGATTATGATACACTTAGCACATGTATATTTGTTTAATTTATCGTTCTCTGATGGAAACTCTTTTTGATGTAATTCGGTGCTGAGACATGAGGCTCTATTTTGTTTAGTGGGAAAGGAGACATTTCAGGGAACTTTTAAAATCAATTAAAGCAATTTCTTAAGTAATACTT
>XM_021578179.2
TGAACTCTGCACAGCCCCTCCCCTATTCTGGTTATTGGGGAAATCCCCGAAATGCACGCTTTTCACTGAAacaaaatattttgctttatAGCTGCTACGGATTGCATTGACAGAGAACCAAGGTGCTGCAAGAAAAGATTCATAAACGGGAGGCGAGATCCTATCGCCTTCCTCCCTCCTTGTGTCCCTGTGTCCAATCCTCTCCTCCCAACCGGTCTTGTGAACTGTCGAGAAAGTGAACGGATACAGGATGGAAGAGCTCAGCCCCCCCCTGGGCCAATGTTCCTTCCAGCAGATTTGGGAGAGCAATATGACACCTCAGGGGCCCAGTATTCCACTGGTTGCTACTGAAAACTGGTCTGACCTGGATGTCTCGATAAATGGCATCCACTTACCTCCCTCACAGCTCCTTCCCGACGCGACTCTCCACAAGGTCTTTGACGAGGTCCTGTTTGAACTGCTGGAGCCCCCGGTTGTGGAGCCCTCTGTGTCAAACCTGGACAGCGTGCCTCCCCCCGCCTCCACAGTCCCCTCCACCAACGACTACCCTGGGAAGCACGGCTTCCAGCTGCGATTCCAAAAGTCGGGTACCGCCAAGTCTGTCACTTCCACTTATTCTGTGCAGCTGAACAAGCTGTACTGCCAGCTGGCTAAGACGTGCCCTGTGGAGGTGTTGATGGCCATGGATCCCCCGCCAGGAGCCATCCTCAGGGCCACCGCTATCTACAAGAAGTCTGAGCATGTCTCTGAGGTCGTCCGGCGCTGCCCCCACCACCAGAGCGCCTCAGATAACAATGAAGgcGTGGTCCACCGCAGTCACTTGATTAGGGTGGAGGGGAGCCAGTGGGCTCAATACCTGGAGGATGGAAACACCAAGCGTCAAAGTGTGCTACTGCCCTATGAGCCTCCTCAGCTGGGCTCTGAAACGACTACTGTTCTCCTGAACTTCATGTGTAACTCCAGTTGCATGGGTGGTATGAACAGACGGCCCATCCTCACCATCCTGACCCTGGAGACCCAGGAGGGTCAGGTTTTGGGTCGCCGTTGTTTCGAGGTCCGTGTGTGTGCCTGTCCCGGCCGGGACCGCAAGACCGAAGAAGAGAACACAAACAAACTGAACGGGACCAAGACCACCAACGGCTCCAAGAGAAagtCCCAACAGGCCCTGCCCCCTCCAGGGACCAGCAAGAAGATCAAGAATGGCTCCAGCACCGAGGATGAAGACAAGGACAATGTATTTTTGTTGCAGgTCCGTGGCCGAGAGCACTATGAGTGGCTCAAGAAGATCAATGACAGTCTGGAGCTGATGGACCACATTCCTCCCGCTGAGCAGGAGAAATACAAGAAGAAAGGTTCCGCAAAGATCCTCAAGCAAGAAGCAATGGCCCCGAAGAGCGGAAAGCGGCTGCTTACAAAGGAAGACAGGAGCGACTCGGACTAAGGCCAGGACACGTCGGTCCTTATTCTCCTGTCTATTCCAGACCAACATTAAGTTGCGACTCCCAAGTTAAATGCCCAATACCAAACCCTAGTCCCTACATGTAGGCACTTCTGAAAGGATAGATATTAGCAAGATAGTAATAGCTCCACCTAGACAGCCATACGCTGGACCCAGAAAGGGGTCAATAGCGACGGACcaacattttaataaatgttGTCATATGAACACgcaagacatggcaaaatgtgtagaattgcaggaaattagcttcaaAACAGTTCAAACTGTGTAAaaagttgttttattttttattgtattgttttttttatatggcGGTAAATGACTGTCCATCCGGAGCTTTTAACAGCTAGGAAAATTGTGACcggaccttctcaaatagtacAAGTACCATGTTGGGATTTTCACCATATTTCGGATACCAGTCCAACAATTTCAGTATAACACAAACTGCGTAAGTGTATGGCCTAGGGTTTGGTTTAGAATTAGCTAGGTAAGCTAAGACCCCTCCTCCCACTGCCTTAACCATCTGCTGGgacttcctcctcctcacctgcCCCCCAAACAGCACTTTAGCTTGTGCTTTTATGATTTGGACCAATTAAATCAAGTATTCATATCTTGACCTGCCTAGCCACGATGCTTTGTTACCAGTTAATTGGCCAGTTGCCTGTTAGTATTTTTATACCTGTTGAACATAACTGCTGTTATCCCTCCCCCTGAAACCTTCTTTTGCCCCTTTTTTTTTAACTTGTTGCTCTGGTTAGAATGTTTTttcattgttaaaaaaaaaatacatttgagttCTCTCTCTTGTGAAGCGGTCTGATACTATGATTATGATACACTTAGCACATGTATATTTGTTTAATTTATCGTTCTCTGATGGAAACTCTTTTTGATGTAATTCGGTGCTGAGACATGAGGCTCTATTTTGTTTAGTGGGAAAGGAGACATTTCAGGGAACTTTTAAAATCAATTAAAGCAATTTCTTAAGTAATACTT
>XM_021578180.2
TGAACTCTGCACAGCCCCTCCCCTATTCTGGTTATTGGGGAAATCCCCGAAATGCACGCTTTTCACTGAAacaaaatattttgctttatAGCTGCTACGGATTGCATTGACAGAGAACCAAGGTGCTGCAAGAAAAGATTCATAAACGGGAGGCGAGATCCTATCGCCTTCCTCCCTCCTTGTGTCCCTGTGTCCAATCCTCTCCTCCCAACCGGTCTTGTGAACTGTCGAGAAAGTGAACGGATACAGGATGGAAGAGCTCAGCCCCCCCCTGGGCCAATGTTCCTTCCAGCAGATTTGGGAGAGCAATATGACACCTCAGGGGCCCAGTATTCCACTGGTTGCTACTGAAAACTGGTCTGACCTGGATGTCTCGCTCCTTCCCGACGCGACTCTCCACAAGGTCTTTGACGAGGTCCTGTTTGAACTGCTGGAGCCCCCGGTTGTGGAGCCCTCTGTGTCAAACCTGGACAGCGTGCCTCCCCCCGCCTCCACAGTCCCCTCCACCAACGACTACCCTGGGAAGCACGGCTTCCAGCTGCGATTCCAAAAGTCGGGTACCGCCAAGTCTGTCACTTCCACTTATTCTGTGCAGCTGAACAAGCTGTACTGCCAGCTGGCTAAGACGTGCCCTGTGGAGGTGTTGATGGCCATGGATCCCCCGCCAGGAGCCATCCTCAGGGCCACCGCTATCTACAAGAAGTCTGAGCATGTCTCTGAGGTCGTCCGGCGCTGCCCCCACCACCAGAGCGCCTCAGATAACAATGAAGgcGTGGTCCACCGCAGTCACTTGATTAGGGTGGAGGGGAGCCAGTGGGCTCAATACCTGGAGGATGGAAACACCAAGCGTCAAAGTGTGCTACTGCCCTATGAGCCTCCTCAGCTGGGCTCTGAAACGACTACTGTTCTCCTGAACTTCATGTGTAACTCCAGTTGCATGGGTGGTATGAACAGACGGCCCATCCTCACCATCCTGACCCTGGAGACCCAGGAGGGTCAGGTTTTGGGTCGCCGTTGTTTCGAGGTCCGTGTGTGTGCCTGTCCCGGCCGGGACCGCAAGACCGAAGAAGAGAACACAAACAAACTGAACGGGACCAAGACCACCAACGGCTCCAAGAGAAagtCCCAACAGGCCCTGCCCCCTCCAGGGACCAGCAAGAAGATCAAGAATGGCTCCAGCACCGAGGATGAAGACAAGGACAATGTATTTTTGTTGCAGgTCCGTGGCCGAGAGCACTATGAGTGGCTCAAGAAGATCAATGACAGTCTGGAGCTGATGGACCACATTCCTCCCGCTGAGCAGGAGAAATACAAGAAGAAAGGTTCCGCAAAGATCCTCAAGCAAGAAGCAATGGCCCCGAAGAGCGGAAAGCGGCTGCTTACAAAGGAAGACAGGAGCGACTCGGACTAAGGCCAGGACACGTCGGTCCTTATTCTCCTGTCTATTCCAGACCAACATTAAGTTGCGACTCCCAAGTTAAATGCCCAATACCAAACCCTAGTCCCTACATGTAGGCACTTCTGAAAGGATAGATATTAGCAAGATAGTAATAGCTCCACCTAGACAGCCATACGCTGGACCCAGAAAGGGGTCAATAGCGACGGACcaacattttaataaatgttGTCATATGAACACgcaagacatggcaaaatgtgtagaattgcaggaaattagcttcaaAACAGTTCAAACTGTGTAAaaagttgttttattttttattgtattgttttttttatatggcGGTAAATGACTGTCCATCCGGAGCTTTTAACAGCTAGGAAAATTGTGACcggaccttctcaaatagtacAAGTACCATGTTGGGATTTTCACCATATTTCGGATACCAGTCCAACAATTTCAGTATAACACAAACTGCGTAAGTGTATGGCCTAGGGTTTGGTTTAGAATTAGCTAGGTAAGCTAAGACCCCTCCTCCCACTGCCTTAACCATCTGCTGGgacttcctcctcctcacctgcCCCCCAAACAGCACTTTAGCTTGTGCTTTTATGATTTGGACCAATTAAATCAAGTATTCATATCTTGACCTGCCTAGCCACGATGCTTTGTTACCAGTTAATTGGCCAGTTGCCTGTTAGTATTTTTATACCTGTTGAACATAACTGCTGTTATCCCTCCCCCTGAAACCTTCTTTTGCCCCTTTTTTTTTAACTTGTTGCTCTGGTTAGAATGTTTTttcattgttaaaaaaaaaatacatttgagttCTCTCTCTTGTGAAGCGGTCTGATACTATGATTATGATACACTTAGCACATGTATATTTGTTTAATTTATCGTTCTCTGATGGAAACTCTTTTTGATGTAATTCGGTGCTGAGACATGAGGCTCTATTTTGTTTAGTGGGAAAGGAGACATTTCAGGGAACTTTTAAAATCAATTAAAGCAATTTCTTAAGTAATACTT

Function

NR:

description
cellular tumor antigen p53-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578177.2 False 2533 mRNA 0.48 10 51202043 51216929
XM_021578178.2 False 2503 mRNA 0.48 10 51202043 51216929
XM_021578179.2 False 2464 mRNA 0.48 11 51202043 51216929
XM_021578180.2 True 2434 mRNA 0.48 11 51202043 51216929

Neighbor

gene id symbol gene type direction distance location
LOC110500677 LOC106608671 coding upstream 27856 51169316 ~ 51174187 (+)
LOC110500675 LOC106608669 coding upstream 48273 51145280 ~ 51153770 (+)
gbrap gbrap coding upstream 60146 51134089 ~ 51142008 (+)
LOC110500674 dulda coding upstream 68697 51116362 ~ 51133346 (+)
elp5 elp5 coding upstream 91836 51107730 ~ 51110207 (+)
LOC110500679 LOC106608674 coding downstream 1055 51217984 ~ 51230820 (+)
LOC110500685 NA coding downstream 81950 51298879 ~ 51301196 (+)
LOC110500686 LOC106608678 coding downstream 99885 51316814 ~ 51332192 (+)
LOC110500687 LOC106608680 coding downstream 134384 51350884 ~ 51361534 (+)
LOC110500885 LOC106608683 coding downstream 153792 51370721 ~ 51413247 (+)
G1749567 NA non-coding upstream 1113 51200660 ~ 51200930 (+)
G1749540 NA non-coding upstream 35329 51166349 ~ 51166714 (+)
G1749536 NA non-coding upstream 58037 51143718 ~ 51144006 (+)
G1749521 NA non-coding upstream 58613 51142985 ~ 51143430 (+)
G1749498 NA non-coding upstream 116213 51085569 ~ 51085830 (+)
G1749580 NA non-coding downstream 22342 51239271 ~ 51239603 (+)
G1749582 NA non-coding downstream 23937 51240866 ~ 51241130 (+)
G1749584 NA non-coding downstream 26676 51243605 ~ 51246308 (+)
G1749626 NA non-coding downstream 88430 51305359 ~ 51305617 (+)
LOC110500883 LOC106577571 other upstream 598766 50598799 ~ 50615280 (+)
LOC110500625 cj011 other upstream 1592463 49606099 ~ 49609714 (+)
G1747814 LOC106606817 other upstream 1755417 49445839 ~ 49446626 (+)
G1749651 NA other downstream 145757 51362686 ~ 51363380 (+)
G1749650 NA other downstream 202040 51418969 ~ 51450475 (+)
G1750012 NA other downstream 854671 52071600 ~ 52079002 (+)
G1750030 LOC106608688 other downstream 877780 52094709 ~ 52095105 (+)
G1750050 NA other downstream 974271 52191200 ~ 52197007 (+)

Expression


Co-expression Network