LOC110500679 (LOC106608674)


Basic Information

Item Value
gene id LOC110500679
gene name LOC106608674
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 51217984 ~ 51230820 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958129.1
TTCTTCAGTCGCCTGAGGTTTTAGGggcgctgttaccttcaacacTGCGGTGGTGGTGTGACTGGACCATACCCGGTCATCTGTGACGtgcacaccaaggaacttgaagccttTGAACCTCTCCGCTGCAGCCCGTCGCCCCTTCaccccgtttcctgtagtccaccatcAACTCCTTGGTTTTACTGTCATTGAGACCGAGGCTGTTTTCCTCGCACCTCTCTGCCAGGACTCttgaccacctccctgtaggctgttacGTCTGCGTCCGTGTGTCCATATTCAAATGAGAGCGAGACGTTGCCTACACAGGTGTAAAGATCAAATGCTGCGTCCGCAGTTGGTTTGTTCTCACTCCTTTTGAACAAAGAAGTCTGAATCGTTCCAGTCGAAGGATGGGCAGGATTCAACACCTGATATTATGGGCTGTGTTGGTGGTGTGTTGTGTAGCTGAGAGACAGTACTTCTTCCAGTCCAACTCCTCCACTTGGGAACAGGCCAGGCTACACTGCCAGGTGTGCTACAAGGAGATGGTGAGCCTGACCCCTGAAAACATCCAGCAACTTGCCCAGAACCTGACCTCTTCTTACTGGATCGGCCTCCGCAAAACCATGAACAACGGCTCCTTCCCCTGGTCCCGCTGGTCCAACGGAAACCCCCTCGCCTTCCAGAACTGGTACCCCGGTCGCCCCATACTCTCCAAGCCCAAGAATCCTGTGAACATCTTTAACAACTACTATTCCATCCGCCCCAATTACTGTGGGTGTTGCTGCACCAATAACAGCAACTCTACCAGCGTTCCCCCGGTAACTACTGTTAATAGTAGCTACCATGGTACTGACTTCGGTAACTCTACAGATGACCTTTTCACAGGAAAGGTAAACATGACTGCATCGTCAACGAAGACACCAGCCGTGACAAAGATGACGTCTGTCATGACGGGATCAACGTTCTTTACTGGAGTTACTGGTGGCATCAATGGCACCAATATGACTAGTGGGAACAATGGGACGAATGAAACTGAGACAGACGTGTACATTGAGGAGCCTTGCATAGCCATGCTCAGTTTTGGACTTTGGTTCGATAAAATCTGCTCAGAGCTTCTTCCTTATATCTGCTATGAAGACCGTTTCTACGGTAATGCCACCATGACCAACAAGACACTACACAGCGCGACTCTGAGCTGGACCCGTGGGCCTGGTGACATCAGCGGATACAGGATGGAGGTCAAGTCCACTGACTACAACCTGACCCTAAACCACAGCAGTCTGAACCAGACCTATGACCTTTCTAACCTCACCGCCGGAACCCAGTACAGAGTCCAGGTGTTCCCCATTAAGTGTGGAAGAGACCTCAACCCACAGAACGTCTCCTTCTACACCAAGCCTGGCGTGATCCAAAAACTCAATGTCGCCAATGTCTCAGAAACAAGCATCTTCCTGACCTGGTTCGCTCCTGAGGGCAACCATGACTTGTACAACATTCAGGTGAGGGGTGAACCCGACCTGAAAATGACCACACGCACAGAGAGCGCCCTGGTCAAAGGCCTGATACCAGGAGGGCTTTACACGTTTGAGGTCAATGCCGAGGTGGAGGACAAGTCCATCGAGGGAGATCGGCTGCATATCCCCTCCTACACCAAACCAGGAATGGTGTCAAACTTAAAGCCGACGGCTCTTACTAATGACAGTGTCCAATTCCAATGGGAACCGCCGACAGGTAACACCTCTGGGTACAGAGCGTACGCCTGGAGAGAAGGAAACAACGGAACGGTTGACATATTCAGGCTGGAACGGACATACACGACTCTGATGGTGGGGAACCAGTCGCCAGGTGCCAAGATCTGGCTGAGCGTTGTGGCACTGGTGCCCGACGGATCGGTTGAGGGAGAACCCAGCAAAGTGATTGGCCGCACCACTCCAGGTGAAGTTACAAACTTACTGCTGGACATTACTGAGGACACCATCAGAGTGTCCTGGACACCTCCTCAGGGAAACTACGAGACATTCAGTGTTCAGCTCAAGCTAAACGCTTCTAACAAGGAAGTGGAAACAGAGAATACAACTAACAGTCAACTCTCATTCACCAAGCTAAAGGCAGGAGCTGAATATTTAGTGACAGTCACCACTCTGAATGGGTATCTCAAGAGTTACCCAATTTCCACTGCAAATTTCACTCTTCCTCTCCCACCGCAATCAGCCCAAATCAATTCCTTCAATAAGAGTCATGTCACCCTGTCATGGAAAGCCCCCGTGGCATCCCAAGGTGTACAAATAATGTACCTGGTGAAATACATAACTGAATTCTGGAATGATACGCAGACGTACGAGACACACGCAACCAACTATACATTTCATGAGTTGCATGCTGGGACCAATTACACCTTCGAAGTACGAGTGAAGGCGGGAACCCAGGAAAGCCAGCCCGTCCAAACATCACAGACCACAAGTGCTACGGTGAGAGTTCGAACTATGACTATGGCGTGTTCCTCCAGCGAACCTTCCATCTGTGAGGATAGCGGCACACGGACAGAGGTCCTGCAAAATTTGATTAGCCATTTCCGCAAGTGGTTCAGCAAGATGGAAAATGAAACTTTGGTTGATAAGGTGTTCTGGGAACTGGAGTGGCGAGGGgcataattacacacacacacacacacacacacacacacacacaccacacaccacacaccacacacaatcaCAATCTATTCAATATAATTTCTTAGTCAAGATTAAGATGAATTGTATTTTGATAATAATAAATTCTAACAATAGATAAATGAAAAGTTGGATGTGTGCCAAGAATGTATGTGTTTTGAATTTCTTGTCTATCCTTGTTTTCCTTGTTTTCAGGATGTGATGTATGTTTTACAAATGCATTTTAGTAAGGTATTTTCTCTGACCAAATTACTGAATAAAAAgctgactgtc
>XM_036958130.1
tggagtcatgggTGTACAAGTAGCACAGAAATGGGCTGAGCACTAGTAATTCGCGGGTGAGCGGTTTGTTCACCCGCACCCACCTGCAGTAGCTAAAGATCCATCCGCAACCACCCGACACACTATGcgataaagtgaaaatctgaagCCCGCACTGGACCCAAAACCTCAAATATGGAAAATGCGCAGTAGCCTACAGAATGCGGGGGAAAAAAATGGCCAGGATTTCAAAAATAGGTCTATgtttctgttttacatttttgccAACTCTCAGGCCGTGAAACACTAATCACTGCACACCTTATCTAACGCGCATTGAAAAGTACTGCTTTTATTCTTCTAATTAGTCCATTATAGTCAGTGCATTAACTTTTCAACTGTGCTCCAAATCGTTTTGAAATCGGAGCATCTGCGACTGCAATTGAACATCACGAGCGAACCTCTATCCTGTCTTGCTACAACGGTGAAATGCGGAACATTGAAGCATATAATTGGTGAAGTTATGTTACGGATCAAGGGGATTGGATGCATGTTTTAAAGAAACAACCCTCAAGATTAGAGTGGAAATTAATGGCGATAAAGGTTCTATCACTGAGTTTAAAAAAACGTATGTACAATGTTGTCAACAAAATTAGGTTGCTGTTACTCCCGCCCCTAATTGCAGAATGCAGCCTTTTGACAGCATATTTAATCCACACTAGCAAAAGTGATTTTGGTGATTGGCATTTAGGCTGTGACAGACCCAGAGTGTTTTAGCAGGGACGTTTGGTACAGTGACCTGATTTGGAACTATGAAAAAGAATTTAGTCAAACAGGTTATGAACCCAAAAGTGTACATTTTATTCTAGAGGGTGGACAATAAATAGAAACATAATTTAGTTTAGTGTGTAGGGGCAGATTTGTCATCTTGTCTTTGGGATATTTGCTATATTTAGTCTGATCAGTGGAATAATTGTCATTCTTAACAATGAGCAACAATATAGGGTCATTCCTGTGCTTGTCATCAagaacactactgttattccccacaCTTATTTTATAGTTCCACTTCCCAATGTTGCCAGTGTTATCACATATTTGAAATCTGATGTGACTACTTGTCTTTGTAAATTAATTATATGAGGCTATGTATTTTTGCAGCCATTCATGGACAGTTTTGAATAAGCCATACAAATAAGCATGGGATATTAAATGCTCTAGGAATCAAATATAATTTGACATGTTAGGGGGACTCAACTTGTTCACATCAATGTGTTTTCCAATAATACTCTGAATACTCCAATGACACTCCCTGTGAgtcttctctctcatcctctcattcTGAATGCAGTCCGTGTGTCCATATTCAAATGAGAGCGAGACGTTGCCTACACAGGTGTAAAGATCAAATGCTGCGTCCGCAGTTGGTTTGTTCTCACTCCTTTTGAACAAAGAAGTCTGAATCGTTCCAGTCGAAGGATGGGCAGGATTCAACACCTGATATTATGGGCTGTGTTGGTGGTGTGTTGTGTAGCTGAGAGACAGTACTTCTTCCAGTCCAACTCCTCCACTTGGGAACAGGCCAGGCTACACTGCCAGGTGTGCTACAAGGAGATGGTGAGCCTGACCCCTGAAAACATCCAGCAACTTGCCCAGAACCTGACCTCTTCTTACTGGATCGGCCTCCGCAAAACCATGAACAACGGCTCCTTCCCCTGGTCCCGCTGGTCCAACGGAAACCCCCTCGCCTTCCAGAACTGGTACCCCGGTCGCCCCATACTCTCCAAGCCCAAGAATCCTGTGAACATCTTTAACAACTACTATTCCATCCGCCCCAATTACTGTGGGTGTTGCTGCACCAATAACAGCAACTCTACCAGCGTTCCCCCGGTAACTACTGTTAATAGTAGCTACCATGGTACTGACTTCGGTAACTCTACAGATGACCTTTTCACAGGAAAGGTAAACATGACTGCATCGTCAACGAAGACACCAGCCGTGACAAAGATGACGTCTGTCATGACGGGATCAACGTTCTTTACTGGAGTTACTGGTGGCATCAATGGCACCAATATGACTAGTGGGAACAATGGGACGAATGAAACTGAGACAGACGTGTACATTGAGGAGCCTTGCATAGCCATGCTCAGTTTTGGACTTTGGTTCGATAAAATCTGCTCAGAGCTTCTTCCTTATATCTGCTATGAAGACCGTTTCTACGGTAATGCCACCATGACCAACAAGACACTACACAGCGCGACTCTGAGCTGGACCCGTGGGCCTGGTGACATCAGCGGATACAGGATGGAGGTCAAGTCCACTGACTACAACCTGACCCTAAACCACAGCAGTCTGAACCAGACCTATGACCTTTCTAACCTCACCGCCGGAACCCAGTACAGAGTCCAGGTGTTCCCCATTAAGTGTGGAAGAGACCTCAACCCACAGAACGTCTCCTTCTACACCAAGCCTGGCGTGATCCAAAAACTCAATGTCGCCAATGTCTCAGAAACAAGCATCTTCCTGACCTGGTTCGCTCCTGAGGGCAACCATGACTTGTACAACATTCAGGTGAGGGGTGAACCCGACCTGAAAATGACCACACGCACAGAGAGCGCCCTGGTCAAAGGCCTGATACCAGGAGGGCTTTACACGTTTGAGGTCAATGCCGAGGTGGAGGACAAGTCCATCGAGGGAGATCGGCTGCATATCCCCTCCTACACCAAACCAGGAATGGTGTCAAACTTAAAGCCGACGGCTCTTACTAATGACAGTGTCCAATTCCAATGGGAACCGCCGACAGGTAACACCTCTGGGTACAGAGCGTACGCCTGGAGAGAAGGAAACAACGGAACGGTTGACATATTCAGGCTGGAACGGACATACACGACTCTGATGGTGGGGAACCAGTCGCCAGGTGCCAAGATCTGGCTGAGCGTTGTGGCACTGGTGCCCGACGGATCGGTTGAGGGAGAACCCAGCAAAGTGATTGGCCGCACCACTCCAGGTGAAGTTACAAACTTACTGCTGGACATTACTGAGGACACCATCAGAGTGTCCTGGACACCTCCTCAGGGAAACTACGAGACATTCAGTGTTCAGCTCAAGCTAAACGCTTCTAACAAGGAAGTGGAAACAGAGAATACAACTAACAGTCAACTCTCATTCACCAAGCTAAAGGCAGGAGCTGAATATTTAGTGACAGTCACCACTCTGAATGGGTATCTCAAGAGTTACCCAATTTCCACTGCAAATTTCACTCTTCCTCTCCCACCGCAATCAGCCCAAATCAATTCCTTCAATAAGAGTCATGTCACCCTGTCATGGAAAGCCCCCGTGGCATCCCAAGGTGTACAAATAATGTACCTGGTGAAATACATAACTGAATTCTGGAATGATACGCAGACGTACGAGACACACGCAACCAACTATACATTTCATGAGTTGCATGCTGGGACCAATTACACCTTCGAAGTACGAGTGAAGGCGGGAACCCAGGAAAGCCAGCCCGTCCAAACATCACAGACCACAAGTGCTACGGTGAGAGTTCGAACTATGACTATGGCGTGTTCCTCCAGCGAACCTTCCATCTGTGAGGATAGCGGCACACGGACAGAGGTCCTGCAAAATTTGATTAGCCATTTCCGCAAGTGGTTCAGCAAGATGGAAAATGAAACTTTGGTTGATAAGGTGTTCTGGGAACTGGAGTGGCGAGGGgcataattacacacacacacacacacacacacacacacacacaccacacaccacacaccacacacaatcaCAATCTATTCAATATAATTTCTTAGTCAAGATTAAGATGAATTGTATTTTGATAATAATAAATTCTAACAATAGATAAATGAAAAGTTGGATGTGTGCCAAGAATGTATGTGTTTTGAATTTCTTGTCTATCCTTGTTTTCCTTGTTTTCAGGATGTGATGTATGTTTTACAAATGCATTTTAGTAAGGTATTTTCTCTGACCAAATTACTGAATAAAAAgctgactgtc

Function

NR:

description
receptor-type tyrosine-protein phosphatase eta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958129.1 False 2933 mRNA 0.49 13 51217984 51230820
XM_036958130.1 True 3996 mRNA 0.45 12 51218295 51230820

Neighbor

gene id symbol gene type direction distance location
LOC110500680 LOC106608673 coding upstream 1055 51202043 ~ 51216929 (+)
LOC110500677 LOC106608671 coding upstream 43797 51169316 ~ 51174187 (+)
LOC110500675 LOC106608669 coding upstream 64214 51145280 ~ 51153770 (+)
gbrap gbrap coding upstream 76087 51134089 ~ 51142008 (+)
LOC110500674 dulda coding upstream 84638 51116362 ~ 51133346 (+)
LOC110500685 NA coding downstream 68059 51298879 ~ 51301196 (+)
LOC110500686 LOC106608678 coding downstream 85994 51316814 ~ 51332192 (+)
LOC110500687 LOC106608680 coding downstream 120493 51350884 ~ 51361534 (+)
LOC110500885 LOC106608683 coding downstream 139901 51370721 ~ 51413247 (+)
LOC110500691 LOC106608684 coding downstream 226408 51457228 ~ 51485888 (+)
G1749567 NA non-coding upstream 17054 51200660 ~ 51200930 (+)
G1749540 NA non-coding upstream 51270 51166349 ~ 51166714 (+)
G1749536 NA non-coding upstream 73978 51143718 ~ 51144006 (+)
G1749521 NA non-coding upstream 74554 51142985 ~ 51143430 (+)
G1749498 NA non-coding upstream 132154 51085569 ~ 51085830 (+)
G1749580 NA non-coding downstream 8451 51239271 ~ 51239603 (+)
G1749582 NA non-coding downstream 10046 51240866 ~ 51241130 (+)
G1749584 NA non-coding downstream 12785 51243605 ~ 51246308 (+)
G1749626 NA non-coding downstream 74539 51305359 ~ 51305617 (+)
LOC110500883 LOC106577571 other upstream 614707 50598799 ~ 50615280 (+)
LOC110500625 cj011 other upstream 1608404 49606099 ~ 49609714 (+)
G1747814 LOC106606817 other upstream 1771358 49445839 ~ 49446626 (+)
G1749651 NA other downstream 131866 51362686 ~ 51363380 (+)
G1749650 NA other downstream 188149 51418969 ~ 51450475 (+)
G1750012 NA other downstream 840780 52071600 ~ 52079002 (+)
G1750030 LOC106608688 other downstream 863889 52094709 ~ 52095105 (+)
G1750050 NA other downstream 960380 52191200 ~ 52197007 (+)

Expression


Co-expression Network