LOC110500685


Basic Information

Item Value
gene id LOC110500685
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 51298879 ~ 51301196 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002470145.2
AATATACATTAATAAGCAAAGATTAGCCAATGGCTATAGAGATACGATGGCGTTGGAAAAACCCGCCTTATTTCCGATTTTTGCCGAACTTCACCGATTCTTATTTTTCCTCTCTaagcaatttttttatttttttttaatctgtgTTGTCTCGTTCGTCTCGCTCTGGATCGGCTACAACTCTTGGAAAAGAAGCTCGTTCACGAGGCCTACCTCGACCTTTCGGAAATCAAAGACATATTTCAAGTGTTTTTTCGcttagtattattatttttaaaccaGTTAAAACTagttatttttctttattttttaagaaGATGTCGAAGTTACTATTGCTTTACAacaacattttgtttttttacgggACTACGCGAGAATCCTCGGTCTCAAGTGGAAACCATGCCGGCGTGATCAGTGTTATTTGAAGTATTCCAACTGGGAAAATCCGACAAAGCCTGCGGTGTTTAATACATTAACGGGACGCGATTGGAAGGCCACGTCTAAAACGAAGTGACCCAGCTTGGCTTTGGCGGTACCAGAAGTGTTTTCACCATGGAAGGACGTGGTTGTTGCCACTGACTGGCTCAGGAGTGGACCAGCCACTGTAGACATTGTTCACAAAACTCTTGCTACAGAACATTACCACAAGACCAAGAGGTCTTCAACTAAAAATGTACACCTAAAAGCTGATGTGACATATTGTAGAATGTTGTCCCCCTTTAACAACTTTTTTGTTTGTTCTTGCATGAGTGTGTAGCCAGGAGGACTTTTTAAAGACTAGAGCAAGTAGGTTTAACAGGGAAGTTGTTACAGATATATGATCACATTGATTGCACTGCATCTGTTGATTTTTAAACGGCATGTCCATAAACCAATCAGTTTGCATTACCGATTTGCAAATACTTTTCTTAGTGGCTAGGCTCTTCTGTATGCTGCTCCTTTTTTAAAGTATAGAATGGTAGTTGCAAATGTACACCCCGATTTGTTGAGCCATTTAAATGAAATGATTGTAGTAACTATTTTGTTTTAAAGTAATAAAGAAATCAAAGTTA
>TU2003268
TCGTCTCGCTCTGGATCGGCTACAACTCTTGGAAAAGAAGCTCGTTCACGAGGCCTACCTCGACCTTTCGGAAATCAAAGACATATTTCAAGTGTTTTTTCGcttagtattattatttttaaaccaGTTAAAACTagttatttttctttattttttaagaaGATGTCGAAGTTACTATTGCTTTACAacaacattttgtttttttacgggACTACGCGAGAATCCTCGGTCTCAAGTGGAAACCATGCCGGCGTGATCAGTGTTATTTGAAGTATTCCAACTGGGAAAATCCGACAAAGCCTGCGGTGTTTAATACATTAACGGGACGCGATTGGAAGGCCACGTCTAAAACGAAGTGACCCAGCTTGGCTTTGGCGGTACCAGAAGTGTTTTCACCATGGAAGGACGTGGTTGTTGCCACTGACTGGCTCAGGAGTGGACCAGCCACTGTAGACATTGTTCACAAAACTCTTGCTACAGAACATTACCACAAGACCAAGAGGTCTTCAACTAAAAATGTACACCTAAAAGCTGATGTGACATATTGTAGAATGTTGTCCCCCTTTAACAACTTTTTTGTTTGTTCTTGCATGAGTGTGTAGCCAGGAGGACTTTTTAAAGACTAGAGCAAGTAGGTTTAACAGGGAAGTTGTTACAGATATATGATCACATTGATTGCACTGCATCTGTTGATTTTTAAACGGCATGTCCATAAACCAATCAGTTTGCATTACCGATTTGCAAATACTTTTCTTAGTGGCTAGGCTCTTCTGTATGCTGCTCCTTTTTTAAAGTATAGAATGGTAGTTGCAAATGTACACCCCGATTTGTTGAGCCATTTAAATGAAATGATTGTAGTAACTATTTTGTTTTAAAGTAATAAAGAAATCAAA
>TU2003269
TCGTCTCGCTCTGGATCGGCTACAACTCTTGGAAAAGAAGCTCGTTCACGAGGCCTACCTCGACCTTTCGGAAATCAAAGACATATTTCAAGTGTTTTTTCGcttagtattattatttttaaaccaGTTAAAACTagttatttttctttattttttaagaaGATGTCGAAGTTACTATTGCTTTACAacaacattttgtttttttacgggACTACGCGAGAATCCTCGGTCTCAAGTGGAAACCATGCCGGCGTGATCAGTGTTATTTGAAGTATTCCAACTGGGAAAATCCGACAAAGCCTGCGGTGTTTAATACATTAACGGTGAAAGACTTTACCGTAATTATAACGGGAAAGCTTGAAATACTAGTGTTTAGAGTAAATTTCGTTAATGTTATGTACATTTATATTCTGAAATAGGGACGCGATTGGAAGGCCACGTCTAAAACGAAGTGACCCAGCTTGGCTTTGGCGGTACCAGAAGTGTTTTCACCATGGAAGGACGTGGTTGTTGCCACTGACTGGCTCAGGAGTGGACCAGCCACTGTAGACATTGTTCACAAAACTCTTGCTACAGAACATTACCACAAGACCAAGAGGTCTTCAACTAAAAATGTACACCTAAAAGCTGATGTGACATATTGTAGAATGTTGTCCCCCTTTAACAACTTTTTTGTTTGTTCTTGCATGAGTGTGTAGCCAGGAGGACTTTTTAAAGACTAGAGCAAGTAGGTTTAACAGGGAAGTTGTTACAGATATATGATCACATTGATTGCACTGCATCTGTTGATTTTTAAACGGCATGTCCATAAACCAATCAGTTTGCATTACCGATTTGCAAATACTTTTCTTAGTGGCTAGGCTCTTCTGTATGCTGCTCCTTTTTTAAAGTATAGAATGGTAGTTGCAAATGTACACCCCGATTTGTTGAGCCATTTAAATGAAATGATTGTAGTAACTATTTTGTTTTAAAGTAATAAAGAAATCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002470145.2 False 1052 mRNA 0.38 3 51298879 51301196
TU2003268 False 893 lncRNA 0.39 3 51299034 51301192
TU2003269 True 989 lncRNA 0.38 2 51299034 51301192

Neighbor

gene id symbol gene type direction distance location
LOC110500679 LOC106608674 coding upstream 68059 51217984 ~ 51230820 (+)
LOC110500680 LOC106608673 coding upstream 81950 51202043 ~ 51216929 (+)
LOC110500677 LOC106608671 coding upstream 124692 51169316 ~ 51174187 (+)
LOC110500675 LOC106608669 coding upstream 145109 51145280 ~ 51153770 (+)
gbrap gbrap coding upstream 156982 51134089 ~ 51142008 (+)
LOC110500686 LOC106608678 coding downstream 15618 51316814 ~ 51332192 (+)
LOC110500687 LOC106608680 coding downstream 50117 51350884 ~ 51361534 (+)
LOC110500885 LOC106608683 coding downstream 69525 51370721 ~ 51413247 (+)
LOC110500691 LOC106608684 coding downstream 156032 51457228 ~ 51485888 (+)
LOC110500694 LOC106608686 coding downstream 200402 51501598 ~ 51507145 (+)
G1749584 NA non-coding upstream 52571 51243605 ~ 51246308 (+)
G1749582 NA non-coding upstream 57749 51240866 ~ 51241130 (+)
G1749580 NA non-coding upstream 59276 51239271 ~ 51239603 (+)
G1749567 NA non-coding upstream 97949 51200660 ~ 51200930 (+)
G1749540 NA non-coding upstream 132165 51166349 ~ 51166714 (+)
G1749626 NA non-coding downstream 4163 51305359 ~ 51305617 (+)
G1749627 NA non-coding downstream 4617 51305813 ~ 51306034 (+)
G1749628 NA non-coding downstream 4945 51306141 ~ 51309648 (+)
G1749634 NA non-coding downstream 13125 51314321 ~ 51314812 (+)
G1749640 NA non-coding downstream 36472 51337668 ~ 51338090 (+)
LOC110500674 dulda other upstream 165541 51116362 ~ 51133346 (+)
LOC110500883 LOC106577571 other upstream 695602 50598799 ~ 50615280 (+)
LOC110500625 cj011 other upstream 1689299 49606099 ~ 49609714 (+)
G1747814 LOC106606817 other upstream 1852253 49445839 ~ 49446626 (+)
G1749651 NA other downstream 61490 51362686 ~ 51363380 (+)
G1749650 NA other downstream 117773 51418969 ~ 51450475 (+)
G1750012 NA other downstream 770404 52071600 ~ 52079002 (+)
G1750030 LOC106608688 other downstream 793513 52094709 ~ 52095105 (+)
G1750050 NA other downstream 890004 52191200 ~ 52197007 (+)

Expression


Co-expression Network