LOC110500694 (LOC106608686)


Basic Information

Item Value
gene id LOC110500694
gene name LOC106608686
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 51501598 ~ 51507145 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578199.2
GCCAACGATAGGTACCCACTTAGGTGCGTGTTGGAGGGACATATAATAACACACCATTGAAGATTGTTTTAAGTTAACTAGCACGGTTACTCAATAATGCCCAGCAAAAAGAAGAAATATAACGCCAGATTCCCTCCGGCCAGGATTAAGAAGATCATGCAGACTGATGAAGAGATAGGCAAAGTGGCTGCCGCAGTTCCTGTCATCATATCACGAGCTTTGGAGCTGTTCCTGGAGTCTCTCCTGACGAAAGCCTGTCAAGTCACCCAGTCCCGGAACGCAAAAACAATGACAACGTCACACTTaaAACAGTGCATTGAGCTGGAGCAGCAGTTTGACTTCCTGAAGGACCTGGTAGCAGCAGTGCCAGACATGCAGGGCGAGGGAGAGGAGAACCACGCAGAGGGGGGGGAAAAAGGTGCACGCAGAGGTCGAAAGCCGGGGTCAGGCCGCAAGAACGGAGGAGCCCGCTCCAAGGGAAAAGACAAGAAGCTATCAGACACAGAGTCGGAGCAAGAGGATGACTCTGAGGATAGCGAGACAGATGGGGATGAGGAGGACGGTTCTCAGTCAAGCACAAACCTGCAGCCGCAATCCCGATTCCACAGCCCAGACACCATACCACCTCAGTACCTCCACATGGGCACCACACAGGGGGGCCTGGCCATGTCCCTAGGCTCCTTTGCCCCCCACCCCTCGCTGATGGGCACCGCACCCCCGCCTCCCCCATCCATGCCGCACAAAGACGATGACGACGACGATGAAGACTATGACTCTTAGCTCCCCCCGCTCTTTTTACCTTTCATTTTCTCATAAGTTGTTCTCTTGTTTGGCTGCATTGACAAAGAGTTGGGTCTGGGGAAACGCTCACATGCAGCTCATTGTTCAGGAAAAGTCTACAACTGTCAGTAAGGCTCGTAGACATGACAGCTGCCACCGCTGAAGATGAGCGTAATCGGTTGTATATTATGTTTTAATTatcattttttttcttattttattgTGGAGAGAATTTGAACCAGGTTGTTTTTTTAAGACAGGTGGTCGTTCTATTTGgactacacacacaaaaaaaccagTTGATGCGTCAAAGCCTCTGGCCTAGCCCAAGGACAGGTTTGATTATTAAGTCCCATTGTAGTTTGCACTTTggttattctctctctgtgttttctgtttgcgACATTGGTGTTCGAAGAACATATCACTCCATTTCCGCTTTCAATGTCTGCTCAAGTTAGTTTGTGGATCTCAACCGAACCCCTGCGCAGCCTAACAGCCTCATAgaatactgtacacacagacaccTACTTGATGATTTCAGAGCAGCAGTATGTCATATTTTAAAAGTGATCAGCACTTACCTATAGGAAAAGGAGATGAGGTTTATTGTCTGTGAGGATTATCATGAATTTGGCAGAGTGGCAGGTCATCCTCTCCAACTAGTTTGATTGTTAGGCTACATAGGCCCTCAACAAATGGGTAAGGAGATGTATTTTACGAAAGGTTATGAATTCTTGTCAATgcatttttttcccctttttaATTAAACTTTTTATGATAATTTATCCTCATGAAGACCTTGACCGTTAGCTTACTTCAACCATATTCAAATGTAATTATGCTAATGTTTACAACTCCAATTGGATGTTCTTGTTTGTTCATTTGAAATTTGGGTGACAAGTCACTACTTTGGAGGTATGACATGAAATATGTTGttttgtaccccccccccccccaaaagaaacATCTCTTGAAGACAAAAGTGTCTGTGCTGGCTATTCTTATCTGAAAGATACTGTGACGCTCCTGAAGCATAACTTTGTTTTTAAAGTTGTTAAACCCCTACCCCTTCTCACCTATAATTTGTTTTCAAGAAGATATCgtacccccccctccccacttgGAATAAAATTAGCCTTTGTATTACGtgttgttctttctctctttttagaTTGTTTtaatgtctgtgtctgtcttgaTATGAAATGTTTAACGGTAGGCAGTTAAACTTGATgctgtatgtaaactttaacattctTTTTATTTTGTATGGGTGAAATAAAGTTCAGATTTCAATAAAA
>XM_036958139.1
GCCAACGATAGGTACCCACTTAGGTGCGTGTTGGAGGGACATATAATAACACACCATTGAAGATTGTTTTAAGTTAACTAGCACGGTTACTCAATAATGCCCAGCAAAAAGAAGAAATATAACGCCAGATTCCCTCCGGCCAGGATTAAGAAGATCATGCAGACTGATGAAGAGATAGGCAAAGTGGCTGCCGCAGTTCCTGTCATCATATGTATCCTTATCAGGCCCGAGAGCTTCACCTGGCTGTATTTCATTGCATGTTTCAACTGCCTGGTCCTGTCGGCTGGTGGCTACTTTTCCCTTTTCTTAATTCAACCACCAGCACGAGCTTTGGAGCTGTTCCTGGAGTCTCTCCTGACGAAAGCCTGTCAAGTCACCCAGTCCCGGAACGCAAAAACAATGACAACGTCACACTTaaAACAGTGCATTGAGCTGGAGCAGCAGTTTGACTTCCTGAAGGACCTGGTAGCAGCAGTGCCAGACATGCAGGGCGAGGGAGAGGAGAACCACGCAGAGGGGGGGGAAAAAGGTGCACGCAGAGGTCGAAAGCCGGGGTCAGGCCGCAAGAACGGAGGAGCCCGCTCCAAGGGAAAAGACAAGAAGCTATCAGACACAGAGTCGGAGCAAGAGGATGACTCTGAGGATAGCGAGACAGATGGGGATGAGGAGGACGGTTCTCAGTCAAGCACAAACCTGCAGCCGCAATCCCGATTCCACAGCCCAGACACCATACCACCTCAGTACCTCCACATGGGCACCACACAGGGGGGCCTGGCCATGTCCCTAGGCTCCTTTGCCCCCCACCCCTCGCTGATGGGCACCGCACCCCCGCCTCCCCCATCCATGCCGCACAAAGACGATGACGACGACGATGAAGACTATGACTCTTAGCTCCCCCCGCTCTTTTTACCTTTCATTTTCTCATAAGTTGTTCTCTTGTTTGGCTGCATTGACAAAGAGTTGGGTCTGGGGAAACGCTCACATGCAGCTCATTGTTCAGGAAAAGTCTACAACTGTCAGTAAGGCTCGTAGACATGACAGCTGCCACCGCTGAAGATGAGCGTAATCGGTTGTATATTATGTTTTAATTatcattttttttcttattttattgTGGAGAGAATTTGAACCAGGTTGTTTTTTTAAGACAGGTGGTCGTTCTATTTGgactacacacacaaaaaaaccagTTGATGCGTCAAAGCCTCTGGCCTAGCCCAAGGACAGGTTTGATTATTAAGTCCCATTGTAGTTTGCACTTTggttattctctctctgtgttttctgtttgcgACATTGGTGTTCGAAGAACATATCACTCCATTTCCGCTTTCAATGTCTGCTCAAGTTAGTTTGTGGATCTCAACCGAACCCCTGCGCAGCCTAACAGCCTCATAgaatactgtacacacagacaccTACTTGATGATTTCAGAGCAGCAGTATGTCATATTTTAAAAGTGATCAGCACTTACCTATAGGAAAAGGAGATGAGGTTTATTGTCTGTGAGGATTATCATGAATTTGGCAGAGTGGCAGGTCATCCTCTCCAACTAGTTTGATTGTTAGGCTACATAGGCCCTCAACAAATGGGTAAGGAGATGTATTTTACGAAAGGTTATGAATTCTTGTCAATgcatttttttcccctttttaATTAAACTTTTTATGATAATTTATCCTCATGAAGACCTTGACCGTTAGCTTACTTCAACCATATTCAAATGTAATTATGCTAATGTTTACAACTCCAATTGGATGTTCTTGTTTGTTCATTTGAAATTTGGGTGACAAGTCACTACTTTGGAGGTATGACATGAAATATGTTGttttgtaccccccccccccccaaaagaaacATCTCTTGAAGACAAAAGTGTCTGTGCTGGCTATTCTTATCTGAAAGATACTGTGACGCTCCTGAAGCATAACTTTGTTTTTAAAGTTGTTAAACCCCTACCCCTTCTCACCTATAATTTGTTTTCAAGAAGATATCgtacccccccctccccacttgGAATAAAATTAGCCTTTGTATTACGtgttgttctttctctctttttagaTTGTTTtaatgtctgtgtctgtcttgaTATGAAATGTTTAACGGTAGGCAGTTAAACTTGATgctgtatgtaaactttaacattctTTTTATTTTGTATGGGTGAAATAAAGTTCAGATTTCAATAAAA

Function

NR:

description
dr1-associated corepressor-like

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K21752 DRAP1, NC2-alpha; Dr1-associated corepressor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578199.2 False 2084 mRNA 0.44 7 51501598 51507145
XM_036958139.1 True 2195 mRNA 0.44 7 51501598 51507145

Neighbor

gene id symbol gene type direction distance location
LOC110500691 LOC106608684 coding upstream 15710 51457228 ~ 51485888 (+)
LOC110500885 LOC106608683 coding upstream 88351 51370721 ~ 51413247 (+)
LOC110500687 LOC106608680 coding upstream 140064 51350884 ~ 51361534 (+)
LOC110500686 LOC106608678 coding upstream 169406 51316814 ~ 51332192 (+)
LOC110500685 NA coding upstream 200402 51298879 ~ 51301196 (+)
LOC110500695 LOC106608687 coding downstream 2138 51509283 ~ 51554830 (+)
LOC110500700 LOC106608599 coding downstream 1454987 52962132 ~ 52963960 (+)
LOC110500701 LOC106608599 coding downstream 1462363 52969508 ~ 52971316 (+)
LOC110500702 LOC106608597 coding downstream 1482217 52989362 ~ 52996635 (+)
LOC110500711 LOC106608589 coding downstream 1598412 53105557 ~ 53139436 (+)
G1749650 NA non-coding upstream 76057 51418969 ~ 51450475 (+)
G1749654 NA non-coding upstream 85245 51414780 ~ 51416353 (+)
G1749649 NA non-coding upstream 87380 51413371 ~ 51414218 (+)
G1749677 NA non-coding upstream 98057 51389695 ~ 51403541 (+)
G1749674 NA non-coding upstream 116452 51384345 ~ 51385146 (+)
G1749655 LOC106608688 non-coding downstream 63266 51570411 ~ 51573264 (+)
G1749835 NA non-coding downstream 269256 51776401 ~ 51777211 (+)
G1749836 NA non-coding downstream 270566 51777711 ~ 51780760 (+)
G1749858 NA non-coding downstream 313508 51820653 ~ 51820956 (+)
G1749651 NA other upstream 138218 51362686 ~ 51363380 (+)
gbrap gbrap other upstream 359590 51134089 ~ 51142008 (+)
LOC110500674 dulda other upstream 368260 51116362 ~ 51133346 (+)
LOC110500883 LOC106577571 other upstream 898321 50598799 ~ 50615280 (+)
G1750012 NA other downstream 564455 52071600 ~ 52079002 (+)
G1750030 LOC106608688 other downstream 587564 52094709 ~ 52095105 (+)
G1750050 NA other downstream 684055 52191200 ~ 52197007 (+)
G1751699 LOC106608599 other downstream 1455304 52962449 ~ 52972383 (+)
LOC110500722 NA other downstream 1744604 53251413 ~ 53256660 (+)

Expression


Co-expression Network