LOC110500701 (LOC106608599)


Basic Information

Item Value
gene id LOC110500701
gene name LOC106608599
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 52969508 ~ 52971316 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578208.2
TTCATGTAGCACATATTAAGGGTAGACTGTGTTGGTATACGCACAGATAGGACAATGAGAccgatttcaccggatgtataattATGAAGCAGTCGCTTGGCAGTTATGTCGCCCGCCAAGCAGGGAGTTTTTGTATGAGGCTAGTAGCATAGAATCTCTCTCCAATAATCAATCTGAGCACCAGGCTTGTCGGTATGTTCTCCGTATACCCCAATGGTCCGAATAGCCTCTCTCTATTTGGTGGGGAGTGGACATTTCAACCGGATGCTTCAGATTTCATATCCGGTGAAACATGTgactttttgttttgtctttggtgtTAAAGTGGGCGAAAGTGGTATTTGGTATAACGTGCGATAGTTTCAGTGACGGTGTTCGGTCAGTCTGACAGTAAAGATGCCATTGCGTGGAGGAACAACTGGGCCAAAGGATGCCACTGAGGAGGTGCAGAAGATTTGTGATGAgATGAAGCCGCATGCAGAGCAGAAAACGGGGAGGAATTTTGACGTTTTCACAGCGAAAATTTACAAGACTCAGTTGGTGGCAGGGACCAACTTCTTCATCAAGGTTCATGTTGGTGGTGAAGACCATGTCCACCTGCGCGTGTATAAAATGCTGCCACACGCCGGAAGCAAACTGGAGCTGACCAGCCTGCAGGAGTCCAAAGCCCACAGCGACCCCATCGAATACTTCTGATTAACCCTGACATTTGACCCCATCAAGTACTTCTAATGACCCCTGTGACCCAGCCGCAGTCCGAGCCGAACCCCGGTGCCTACCCTACCCAATACACCACAGCCTCCTTTCCCTCCACATAATAGATCTGTGGTCATTCTACAGCCCAGGTAGCCTTTTAATATCAGTTTTCAGTGTTTCTTAAAATGATTTTATAATATGTAGCTGATGGGAAACCTTCATGTATGAAGGGAAATTGAAATAATGAATGAGCTCCAAACAAGAAATAATATTTGCCTACTCAATTAAAGACAATATACTATTTTGCCACATGGTTAATAAATCATAATACTTTTTAACTAAGATTAA

Function

NR:

description
cystatin-B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578208.2 True 1044 mRNA 0.44 3 52969508 52971316

Neighbor

gene id symbol gene type direction distance location
LOC110500700 LOC106608599 coding upstream 5548 52962132 ~ 52963960 (+)
LOC110500695 LOC106608687 coding upstream 1414678 51509283 ~ 51554830 (+)
LOC110500694 LOC106608686 coding upstream 1462363 51501598 ~ 51507145 (+)
LOC110500691 LOC106608684 coding upstream 1483620 51457228 ~ 51485888 (+)
LOC110500885 LOC106608683 coding upstream 1556261 51370721 ~ 51413247 (+)
LOC110500702 LOC106608597 coding downstream 18046 52989362 ~ 52996635 (+)
LOC110500711 LOC106608589 coding downstream 134241 53105557 ~ 53139436 (+)
si:dkey-28a3.2 LOC106608587 coding downstream 177503 53148819 ~ 53159292 (+)
LOC110500717 LOC106608585 coding downstream 192795 53164111 ~ 53214983 (+)
LOC110500719 LOC106608586 coding downstream 243913 53215229 ~ 53245179 (+)
G1751702 NA non-coding upstream 2818 52961160 ~ 52966690 (+)
G1751687 NA non-coding upstream 79208 52889765 ~ 52890300 (+)
G1751646 NA non-coding upstream 163994 52805257 ~ 52805514 (+)
G1751645 NA non-coding upstream 167057 52802224 ~ 52802451 (+)
G1751642 NA non-coding upstream 168156 52801136 ~ 52801352 (+)
G1751700 NA non-coding downstream 3022 52974338 ~ 52975041 (+)
G1751727 NA non-coding downstream 4602 52975918 ~ 52976149 (+)
G1751729 NA non-coding downstream 6453 52977769 ~ 52977970 (+)
G1751738 NA non-coding downstream 29358 53000674 ~ 53001197 (+)
G1751739 NA non-coding downstream 35820 53007136 ~ 53007397 (+)
G1750050 NA other upstream 772501 52191200 ~ 52197007 (+)
G1750030 LOC106608688 other upstream 874403 52094709 ~ 52095105 (+)
G1750012 NA other upstream 890506 52071600 ~ 52079002 (+)
G1749650 NA other upstream 1519033 51418969 ~ 51450475 (+)
G1749651 NA other upstream 1606128 51362686 ~ 51363380 (+)
LOC110500722 NA other downstream 280433 53251413 ~ 53256660 (+)
LOC110500735 ablim2 other downstream 1235382 54206483 ~ 54342581 (+)
G1753100 NA other downstream 2030263 55001579 ~ 55011678 (+)
LOC110500754 LOC106591080 other downstream 2619289 55590450 ~ 55592100 (+)
G1755158 NA other downstream 3415091 56386407 ~ 56387622 (+)

Expression


Co-expression Network