LOC110500711 (LOC106608589)


Basic Information

Item Value
gene id LOC110500711
gene name LOC106608589
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 53105557 ~ 53139436 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578230.2
TCCGCCTTGTTTCGCTCTTTCGGTCCTGCACACTCACAACGCTTCAGTACGTGCGCGTGAAGGTGCACAGGCTCGGTGACACTTGCACCCAGCTCTTTGGGAATAGGAGGAAAGTCGGAAGAAAAGGTTATTTTAAGGACAGCAATAACAACATTTATTCTCACCGTTACTGTGCAGAATATCGTGAAATTACAGGAAAATGGCAGATTCAATGACCCAGTCCGCCCAGATATCATCGTCGCAGGAGCTTGCCGATGGACAGAACTCTGTTGCGGCCAAAGACTCAAAAATGTCGGTCAAGGACTTGGTGCACTGGCGAGACCCCAAGAAGTCTGGCGTGGTGTTCGGCCTGTCCCTGCTGACGCTCCTGTCCCTGGCGGCGTTCAGCGTCATCAGCGTTGTCTCCTACCTGCTCCTTGCCCTGCTCTGTGTCACCATCTCCTTCCGCATCTACAAGGCTGTCGTCCAGGCCGTGCAGAAGTCCGACGACGGACACCCCTTCAAAGCTCTGATGGAGAAGGATGTCAGCGTTCCCCCTGAGACCTTCCGCAAGCACGTGGACGCCAGTCTGACCCACATCAACCGACTCCTAAAACAGCTGCGCAAACTCTTCCTAGTCGAGGACCTCATCGACTCCCTGAAGCTGGCTGTTGTGATGTGGCTGCTGACCTACGTAGGAGCCGTTTTCAACGGCATCACCATCCTCATCCTGGCTGACATCCTCCTCTTTGCCGTACCCCCCTTCTATGAGAAGAACAAGACCCAGATTGACCACTACATGGAAATCGCACGTACTCAAGTCAACACCACAATGGCCAAGCTGCAAGAGAAACTCCCTGGAGCCATCAAGCGTACAAAAGCTGAATGATTGACCCTCATACATCTTAATCACCATCCTCATCACATTTATCCCATCTTAAACCCCTTTCCCTcgccctctcccttctctttccctACTGTCTCCCTCCCACATACCATCTGCACTGAACCAGCTAGGTAGAAAAAAAATGCTACTCAATAGTCAATGTAAACCGCTCAGCTTAACTACAAGAATTTAGAACAAGAATGGTGCCTACTGCGCCGGCAGGAAACGCGTCTAACGGGAGGAAGTGATGTAAACGCTTCGGCATAACACCTGTCTTTGATGCAGGGGTCAAGTGAACAAGACTGAATCAATGAcctggtattgtattgtagtgtaaagTTGGGAGGGTGTAGGGAGCATCATTGACGAGTTAGGACCAGTGTTTGTTTAGCAAAAAAGCAGATGTCTGTACTTTTTAACTATGCCTTTCACTGAacataagtaaaaaaaaaaattaaaaaagttttaaaaaagagctaactgataaataaataaactttgGGGTGTAATTTGTGGCTagtctttttccttctctctgtgtggCAGTTGTATggataaacaaaaaaaaaagttgttttgaACCTGGTCCTGGGATTTCACTGTTACTGATTGGCCTGTTATGGAGTTGTCGTCTTCACCTTAAAGGCTTGTATGTATAACGTTTCTGCAATGCACTGAACTTCAAATCCCATGAGCAGGTTGAAATAAAAGGATTGGAACACTGAA
>XM_021578229.2
GCCTTGTTTCGCTCTTTCGGTCCTGCACACTCACAACGCTTCAGTACGTGCGCGTGAAGGTGCACAGGCTCGGTGACACTTGCACCCAGCTCTTTGGGAATAGGAGGAAAGTCGGAAGAAAAGGTTATTTTAAGGACAGCAATAACAACATTTATTCTCACCGTTACTGTGCAGAATATCGTGAAATTACAGGAAAATGGCAGATTCAATGACCCAGTCCGCCCAGATATCATCGTCGCAGGAGCTTGCCGATGGACAGAACTCTGTTGCGGCCAAAGACTCAAAAATGTCGGattcctttctttCCTCTTCGCCTGTATCTCTCATTCAGTCTCCTGAAGTCAAGGACTTGGTGCACTGGCGAGACCCCAAGAAGTCTGGCGTGGTGTTCGGCCTGTCCCTGCTGACGCTCCTGTCCCTGGCGGCGTTCAGCGTCATCAGCGTTGTCTCCTACCTGCTCCTTGCCCTGCTCTGTGTCACCATCTCCTTCCGCATCTACAAGGCTGTCGTCCAGGCCGTGCAGAAGTCCGACGACGGACACCCCTTCAAAGCTCTGATGGAGAAGGATGTCAGCGTTCCCCCTGAGACCTTCCGCAAGCACGTGGACGCCAGTCTGACCCACATCAACCGACTCCTAAAACAGCTGCGCAAACTCTTCCTAGTCGAGGACCTCATCGACTCCCTGAAGCTGGCTGTTGTGATGTGGCTGCTGACCTACGTAGGAGCCGTTTTCAACGGCATCACCATCCTCATCCTGGCTGACATCCTCCTCTTTGCCGTACCCCCCTTCTATGAGAAGAACAAGACCCAGATTGACCACTACATGGAAATCGCACGTACTCAAGTCAACACCACAATGGCCAAGCTGCAAGAGAAACTCCCTGGAGCCATCAAGCGTACAAAAGCTGAATGATTGACCCTCATACATCTTAATCACCATCCTCATCACATTTATCCCATCTTAAACCCCTTTCCCTcgccctctcccttctctttccctACTGTCTCCCTCCCACATACCATCTGCACTGAACCAGCTAGGTAGAAAAAAAATGCTACTCAATAGTCAATGTAAACCGCTCAGCTTAACTACAAGAATTTAGAACAAGAATGGTGCCTACTGCGCCGGCAGGAAACGCGTCTAACGGGAGGAAGTGATGTAAACGCTTCGGCATAACACCTGTCTTTGATGCAGGGGTCAAGTGAACAAGACTGAATCAATGAcctggtattgtattgtagtgtaaagTTGGGAGGGTGTAGGGAGCATCATTGACGAGTTAGGACCAGTGTTTGTTTAGCAAAAAAGCAGATGTCTGTACTTTTTAACTATGCCTTTCACTGAacataagtaaaaaaaaaaattaaaaaagttttaaaaaagagctaactgataaataaataaactttgGGGTGTAA
>XM_021578228.2
CCTTGTTTCGCTCTTTCGGTCCTGCACACTCACAACGCTTCAGTACGTGCGCGTGAAGGTGCACAGGCTCGGTGACACTTGCACCCAGCTCTTTGGGAATAGGAGGAAAGTCGGAAGAAAAGGTTATTTTAAGGACAGCAATAACAACATTTATTCTCACCGTTACTGTGCAGAATATCGTGAAATTACAGGAAAATGGCAGATTCAATGACCCAGTCCGCCCAGATATCATCGTCGCAGGAGCTTGCCGATGGACAGAACTCTGTTGCGGCCAAAGACTCAAAAATGTCGGattcctttctttCCTCTTCGCCTGTATCTCTCATTCAGTCTCCTGAAGACAAAGGGGTGGTGCTGGGCTCTGACACACCCTCCTCAGAAGGGGTGGCCACCTCCCTTCGCTTCACCAGGCCTTCTCAACCCGGCTCATCTTCTTCCGCAAACTACGGGAGCGACCCACCTGACGGAAAGCAAGATGATTCACCGACTGTGACGTCCCCCGTGTCTGAGAGGATTAAGGCACTGGAGGCCATGGCAGCAAAGAAGGAGCTCAAGAACGACGGCGGCTTCCCTCACTTCAAAGAGCGTCACTATGAGACGTCTCCTACTGAGGCGCCAACAGAGAGCACCTCACCCTTCCAGACAAAAGGAGCCTCCATTGATCAGGAATCGCCAGAATCCCCCTTTGAGGTCATGGGAGAAGCCCGACAAGGTAGTGAGTTTGAAGATACTGCAGACTGGATGAGAGCTCACTTACCCCCTGTGCCCGACTTTGAAGATGCTCTTGTATCAGAGGAGGATGGCAAATCCCAAGAGATAAAAGTGGCAGATAAAGTGGTGCCTGATGACCCAGAGGCGTTTGCCTGTGTCCCTGACGCTTTCATGGACTCTCCCATTGAAAGGCCTGAACTGAAAAATGTCTTCAAAGACCCAGCGCAGCAGCCTAGCGTCGAGGACGAATTTGATCTGAGCTTCCTACCTAAAGCTTACATAGCAGACACCCAAGGCCCCCCTGACCTTCATTCCGAGCTCACTGCTTCGCCTGCTCCTCCTGCTGGTTTGGACTCACCCTATCCTTCCTCTGACTCGAAAGAGAAGGATTTGAAGACCAAGCAGGCCCCATGGGGTGGTGACCTGGCGCACCAAGGGGTAGTCGACAGCTCAGGAGACTCTGAGGACACCGTCATCGAGGACACCGCCTCCATTCCTGGCCCCACTTTGTCAAGTGATGCCACACCTGCCCATAACCCCTCTGTTCCATCTCTCCCTACTGAAGAAAAGGAAACTCCGCCAGCGAAGCAGCCAATGCGGGTCCCTACCATCAATGTTATTGAGACGGACGAGCCGAATTACAGCGATGAGGAGATGGAGATTGAAATGGAGGATGAAAATTATGAAGTTGTAGAAGACCCTGTGAAAGAGGCACCAAAAATACCTGAGCCACAACCAGATGTGACTAAAAAGGAATTTTCCCAAATTCCTCCCTTAGAATATGAGGGttattctcctccctcctctcctgtcgaCTCTGATGAATACTCACCTAAACACAAGATCCTGAAATCTGATTTGGATACAGATAATATGAAGACCACAGTACCTAATGATGAGTCAAAGGGCTCAAGTGCTGAGGTTTCACAAGCACAGAAAGTGGAGTCTGACCACTCACAGACCCCCAATGAGTCTAATGGAAAGTCTTCCCCTTCTACTGCCAAACCTCCTGAGAAAACCGCAGAGAACCTTTCAGACTTTCCAGAATATGATGACGATGACTGGTCAACTGGCGCGCAAGATATCTTAATTAACTTGAGCTCTGCTAATGTTGCAGCTCAGGATCTTCCACTTTGCCCCTCATCCAAGTTTGAAGAGAAGCCAGAGTCTGATATTAAGGAGGATTATATGCAGACAGTTGAGCTTTCAAAACCCAACTACATGGAGGATGGCGCAATCCGTAAATACGACAGACAGTCTTTTGAAGATGAAGACGCATTTCCATCCATGAATGACACCATTGATGATAAAGAGCTGAACTTTAACACTGTACCTGAGCCTTCTCCTTCCAATCCAACCTCACAGATCCATATTGGAACACTACTCCCTCAAAACAATGCAACCACTGTGGAGCAGGATATCCCCTCGATGGCTGACGTGGACTCCTTCCCCAAGCCAGTTGGAGGCCAGCCATCTCCCAGGGAGTTTCCCAAAGATCCATTCGCCTCTTTCCAGAGCGAACTGCCTGGCAGCACCCTGGAGCCCAAGACTGAGAAGAAATTGAATGATGAAATCCTCATTACAGATAGTGTTGTCAACAGCAAGATACTTCCGGCTCAGGAAGCTGAAGCAGGACACCAGTCACCAGACAATACCAGTGACCCAGAAAGCATTGAGCCGGACTGCTCAGTCTCTGGTGCCACGGACAGCTTCGTCGAGTTCATGAGGGAGTGCCTGAAGTCACGACAGGACGAAGATCCAGAAGACCTCCGTCAAGATCTCACAGCCAAGGATGAGTGTCCTAAAACAGGCGCCCCTCCCTCCCAGCCCACACCAACCATGGTCATGGATCTGGAGCAGGAACGCCTCACTATCAATGCCCTCAAAGAATTGGGCAGCAGCCAAGAGGAggaggctgacctccagtctagTATCAAGGCTTCTGAGAAATCCCAGTCTTCCTTTATATCAACAACCTCTGACCCTCCTTCTCCCCAAAACAAACCTGCTTCCGACGGTGTATATTCCAAAGAGGTAGAGGCCATCGACGTGTGGGTGGCTGAGGCCTACCACCTTGCAGAGCATGTCTTGGCAGCAATACTAACGCACTTGTCAGTCAAGGACTTGGTGCACTGGCGAGACCCCAAGAAGTCTGGCGTGGTGTTCGGCCTGTCCCTGCTGACGCTCCTGTCCCTGGCGGCGTTCAGCGTCATCAGCGTTGTCTCCTACCTGCTCCTTGCCCTGCTCTGTGTCACCATCTCCTTCCGCATCTACAAGGCTGTCGTCCAGGCCGTGCAGAAGTCCGACGACGGACACCCCTTCAAAGCTCTGATGGAGAAGGATGTCAGCGTTCCCCCTGAGACCTTCCGCAAGCACGTGGACGCCAGTCTGACCCACATCAACCGACTCCTAAAACAGCTGCGCAAACTCTTCCTAGTCGAGGACCTCATCGACTCCCTGAAGCTGGCTGTTGTGATGTGGCTGCTGACCTACGTAGGAGCCGTTTTCAACGGCATCACCATCCTCATCCTGGCTGACATCCTCCTCTTTGCCGTACCCCCCTTCTATGAGAAGAACAAGACCCAGATTGACCACTACATGGAAATCGCACGTACTCAAGTCAACACCACAATGGCCAAGCTGCAAGAGAAACTCCCTGGAGCCATCAAGCGTACAAAAGCTGAATGATTGACCCTCATACATCTTAATCACCATCCTCATCACATTTATCCCATCTTAAACCCCTTTCCCTcgccctctcccttctctttccctACTGTCTCCCTCCCACATACCATCTGCACTGAACCAGCTAGGTAGAAAAAAAATGCTACTCAATAGTCAATGTAAACCGCTCAGCTTAACTACAAGAATTTAGAACAAGAATGGTGCCTACTGCGCCGGCAGGAAACGCGTCTAACGGGAGGAAGTGATGTAAACGCTTCGGCATAACACCTGTCTTTGATGCAGGGGTCAAGTGAACAAGACTGAATCAATGAcctggtattgtattgtagtgtaaagTTGGGAGGGTGTAGGGAGCATCATTGACGAGTTAGGACCAGTGTTTGTTTAGCAAAAAAGCAGATGTCTGTACTTTTTAACTATGCCTTTCACTGAacataagtaaaaaaaaaaattaaaaaagttttaaaaaagagctaactgataaataaataaactttgGGGTGTAA

Function

NR:

description
reticulon-3-like isoform X1

GO: NA

KEGG:

id description
K20723 RTN3; reticulon-3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578230.2 False 1591 mRNA 0.47 7 53105557 53139436
XM_021578229.2 False 1419 mRNA 0.48 8 53105560 53139219
XM_021578228.2 True 3905 mRNA 0.50 9 53105561 53139219

Neighbor

gene id symbol gene type direction distance location
LOC110500702 LOC106608597 coding upstream 108922 52989362 ~ 52996635 (+)
LOC110500701 LOC106608599 coding upstream 134241 52969508 ~ 52971316 (+)
LOC110500700 LOC106608599 coding upstream 141597 52962132 ~ 52963960 (+)
LOC110500695 LOC106608687 coding upstream 1550727 51509283 ~ 51554830 (+)
LOC110500694 LOC106608686 coding upstream 1598412 51501598 ~ 51507145 (+)
si:dkey-28a3.2 LOC106608587 coding downstream 9383 53148819 ~ 53159292 (+)
LOC110500717 LOC106608585 coding downstream 24675 53164111 ~ 53214983 (+)
LOC110500719 LOC106608586 coding downstream 75793 53215229 ~ 53245179 (+)
cth1 LOC106608603 coding downstream 109238 53248674 ~ 53250658 (+)
LOC110500722 NA coding downstream 111977 53251413 ~ 53256660 (+)
G1751792 LOC106608591 non-coding upstream 6146 53098749 ~ 53099411 (+)
G1751766 NA non-coding upstream 43075 53061348 ~ 53062482 (+)
G1751764 NA non-coding upstream 55096 53050230 ~ 53050461 (+)
G1751761 NA non-coding upstream 60640 53044717 ~ 53044917 (+)
G1751760 NA non-coding upstream 61145 53044192 ~ 53044412 (+)
G1751821 NA non-coding downstream 21132 53160568 ~ 53160824 (+)
G1751865 NA non-coding downstream 120929 53260365 ~ 53260708 (+)
G1751863 NA non-coding downstream 126849 53266285 ~ 53266800 (+)
G1751699 LOC106608599 other upstream 133174 52962449 ~ 52972383 (+)
G1750050 NA other upstream 908550 52191200 ~ 52197007 (+)
G1750030 LOC106608688 other upstream 1010452 52094709 ~ 52095105 (+)
G1750012 NA other upstream 1026555 52071600 ~ 52079002 (+)
G1749650 NA other upstream 1655082 51418969 ~ 51450475 (+)
LOC110500735 ablim2 other downstream 1067262 54206483 ~ 54342581 (+)
G1753100 NA other downstream 1862143 55001579 ~ 55011678 (+)
LOC110500754 LOC106591080 other downstream 2451169 55590450 ~ 55592100 (+)
G1755158 NA other downstream 3246971 56386407 ~ 56387622 (+)

Expression


Co-expression Network