cth1 (LOC106608603)


Basic Information

Item Value
gene id cth1
gene name LOC106608603
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 53248674 ~ 53250658 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578245.2
TGATCCTCGTTTTAAAGGGAAGGCGGGAGTGGGAACTGGGTCAAGTTAAAAATACAGAGGACACAGGCGCAAGATACGTGCTACTTCATAACAAAGCAAGTAGGGTGGCCGGTAGTTCACTTCATTAACGGGCAGTAGGCTAGAATAGGTTTTAACGCTTCTTTTATTTCTACGAATTTCATGCGGAAAAGTTCTTTAGAATTTCCTTGGACATTGAGGTTACAGTCGAACAACAGGTGGAGAGCGTCTGGGGCACAGTCGTTGGGCAATATCTTCAATTCGTAACAATGTTTGAGAGAAGCAGTGATGACCTGCCCATGTTCCCCTACCATGAGGGACGAGATGACCTGTTCCCTAGGGAGCACTGCTCAGCTAGAGGTGGGGGAGGCATGTCCCTGGCTGAGGCCCTCCTTCCCCTAGTGGAGTCTCCCTCCCAGATCCCCTGGTTGTGCTCCACCCGCTATAAGACGGAGCTGTGCAGTCGCTATGCCGACACGGGCTTCTGCAAGTATGCTGAGCGCTGCCAGTTTGCCCATGGCCTCCACGACCTCCACGTGCAGTCCCGCCATCCCAAGTACAAGACGGAACTGTGCCGCACCTTCCACACGGCAGGCTACTGCGTCTATGGCACCCGCTGCTTGTTCGCCCACACTGCCAAGGAACAGCGCCCCCCACACCGCCGGCGCCGCAACATCCCCTGCCGCACCTTCCGCTCATTTGGTGTGTGCCCCTTTGGCACACGCTGCAACTTCCTGCACATTGAGGGTGACAGTAGTGGCGGCCTGGATTCCCCAAACAGCGCTCCTGAGAAGGCCCCCATTGCCAGGCCCCAGCCACAATCCCAGGACTGGAAGCCCCGCGGGGCCCTGTGCCGCACCTTTAGCTCCTTTGGCTTCTGCCTCTACGGCACCCGCTGCTGCTTCCAACATGGCCTGCCGAGCAGCATCCAGGGGGGTGCCCGCACCCATCTGCTGTCCCTAGCTTCAGACAGGTTCTCTTCTCCctgctcctcatcctcctcctctccaccatctGGACTGCCCTCCCCAGTCTGGCCTGAGGATTCATCCACCCCGCTGAACAACCCCGTGGCCCACAATGCCTTCACCTTCTCCATCCAGCTGAATGATGTGCTGCTGCCTCTGGCCCTCAGGCTCCAGCAGCTGGACAACAGCCAGGCCATGGAGGCTGCCTGCAACATGCAGAGTGTCTGGGGGGACAAGCTTTAGTCACTTGGCAAGAATGGTATTGTAACTAATGTGATGTATAGCCAGCCTACTGTATATTGTGATGGTTTGCTATGGTCTTGGAAGCCATATGTATTTTAATAGGGGGGTGGTGTAAGTGTCTTTTGGGATGTTCCATGTGACGATCTTCAATGTTAGTTTGGAGAGACTGATTACTGTCCTGCATTACAATTTGTATGGCCTCATTGGTGTTCTGACTGATCCACTCATTTTGTTTATATAGATTAGGCCTTGTAACTGTACATTTTAATGAGGTTATACATGTTTATTTATGAGTTTTAACTTAAGTTTTTATTTATTGTGATACTTCTGCCTTGAATAAACCACAATTTTTAATGA

Function

NR:

description
mRNA decay activator protein ZFP36L2-B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578245.2 True 1586 mRNA 0.53 2 53248674 53250658

Neighbor

gene id symbol gene type direction distance location
LOC110500719 LOC106608586 coding upstream 3495 53215229 ~ 53245179 (+)
LOC110500717 LOC106608585 coding upstream 33691 53164111 ~ 53214983 (+)
si:dkey-28a3.2 LOC106608587 coding upstream 89382 53148819 ~ 53159292 (+)
LOC110500711 LOC106608589 coding upstream 109238 53105557 ~ 53139436 (+)
LOC110500702 LOC106608597 coding upstream 252039 52989362 ~ 52996635 (+)
LOC110500722 NA coding downstream 755 53251413 ~ 53256660 (+)
LOC110500887 LOC106608584 coding downstream 17855 53268513 ~ 53330654 (+)
si:ch73-40a2.1 LOC106608602 coding downstream 85258 53335916 ~ 53347700 (+)
rab1ba LOC100695098 coding downstream 97855 53348513 ~ 53367113 (+)
LOC110500724 LOC106608582 coding downstream 155388 53406046 ~ 53418358 (+)
G1751821 NA non-coding upstream 87850 53160568 ~ 53160824 (+)
G1751787 NA non-coding upstream 110214 53092517 ~ 53138460 (+)
G1751792 LOC106608591 non-coding upstream 149263 53098749 ~ 53099411 (+)
G1751766 NA non-coding upstream 186192 53061348 ~ 53062482 (+)
G1751865 NA non-coding downstream 9707 53260365 ~ 53260708 (+)
G1751863 NA non-coding downstream 15627 53266285 ~ 53266800 (+)
G1751883 NA non-coding downstream 36532 53287190 ~ 53287487 (+)
G1751905 NA non-coding downstream 104760 53355418 ~ 53356897 (+)
G1751699 LOC106608599 other upstream 276291 52962449 ~ 52972383 (+)
G1750050 NA other upstream 1051667 52191200 ~ 52197007 (+)
G1750030 LOC106608688 other upstream 1153569 52094709 ~ 52095105 (+)
G1750012 NA other upstream 1169672 52071600 ~ 52079002 (+)
G1749650 NA other upstream 1798199 51418969 ~ 51450475 (+)
LOC110500735 ablim2 other downstream 956040 54206483 ~ 54342581 (+)
G1753100 NA other downstream 1750921 55001579 ~ 55011678 (+)
LOC110500754 LOC106591080 other downstream 2339947 55590450 ~ 55592100 (+)
G1755158 NA other downstream 3135749 56386407 ~ 56387622 (+)

Expression


Co-expression Network