rab1ba (LOC100695098)


Basic Information

Item Value
gene id rab1ba
gene name LOC100695098
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 53348513 ~ 53367113 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958175.1
TCTGTAGTGCCACATCATTTGATGTCACTGCCGCACCTGCGCAGCCATCTTGTACTTCTAGCGAGGAGCGGACACAGAAAGAAATCAAAAGGATCAAATAAACCTGTCAAATCAGAAGAAAATAGGAATGTCTTTAAACGTTATATAGCCTCATAACGATTAGACACCCAAGAAGGACAAGGTTAGGTTAAAAAAAAGACGGTGAAATAGACATTCAAGTGCTTCGGATATCCAGACCTACAAGTCATATTTTGCTTGTGAGTGAGAGGAGGAACAGTCAAATCGCCGAAAGAAAAACACATCCCGAACATCAGTCAAATCATGAATCCAGAATATGACTACCTGTTCAAGCTCCTCCTTATTGGTGACTCCGGTGTGGGAAAGTCCTGTCTTCTGCTCCGCTTTGCTGATGACACCTACACAGAGAGCTACATCAGCACCATCGGTGTAGACTTCAAGATCCGCACCATCGAGCTGGACGGCAAGACCATCAAACTACAGATTtgggACACTGCTGGTCAGGAGAGGTTCCGCACCATCACCTCCAGTTACTACAGGGGCGCCCACGGCATCATCGTGGTCTATGATGTCACAGATCAGGAGTCGTACAACAATGTGAAGCAGTGGCTGCAGGAGATCGATCGCTACGCCAGCGAGAACGTCAACAAGCTGCTGGTGGGGAACAAGTGTGACCTCACCACCAAGAAAGTAGTGGACTACACAACAGCCAAGGAATTTGCTGACTCCCTGGCCATCCCCTTCCTGGAAACAAGTGCCAAGAACGCCACCAACGTGGAGCAGGCCTTCATGACCATGGCTGCTGAGATCAAGAAGAGGATGGGCCCCGGGGCCACAGCTGGAGGGGACAAGCCCAACCTGAAGATCGACAGCACCCCTGTCAGGCAGTCTGGAGGGGGGTGCTGTTAAACTGGACTCTGTTCTGGATGCTTTCCTCTTCTTCACCCTCCCTGCTCTGGGCTTCACTTCCTCCACCTCTTAATCCCTCAGCCTCCCTCCCATCTCCCGTTCTCTTACTCTTGCCGCGGGATGGGTGGTTGGATAGGGAGGGGAGGAGTTGAGGGGTGAGAACTGGGGACTGACTTTAAGACCATATCTCCCCACAAAAAAGTAAAGAGAAAAGTTAGGTGGGGTTTAGGTTGagaacttttttttctttttttccaaGCGATGAGTCAGGAACGTAAACAGATATGCGAAAAGATTGGTATTGACTTAGAGGAGTACTGGGTGATAGAAGATTAGGTTTTAGATTCCGGCGAGcgcttatctctctccctctcctgtttacacacacacatacacacacacacacatacacacacgcacacacacgcacacacacagacagacagacaacaggggGCGGAGTGATTCTCCCACAGGAAGTCGTCACAGGTGAGGTTCTCTTTCCTTTAGGCTATGTCTGTCATTGCTATCCAATGGAAGTCCTATAGCAAATTCAGTTTAGAGTGCTACAGTAATCTGTAATTTATGTATTGGACCTGTTTTATCTCAGACTGCTGGGGTGCCTTGTAGTCATGACTACGTGTCACCATCTTAAGTCTGTTTATAGGTGTCAAGTGAGTGACGTTTTCAATCTAGCCTACGGTCTACGTTCCACATGCAATAGTAACACTAATGCACTATTTATACCcatgtatccatccatccatcatccattgTATGAACTGAATTGGCGTTggggcagactgcaccactaccAGCGTCCTAACAACTGAGTCATCCAATATATTAATCGATGAGGATACGGGTATCTAGGATACGGGTATcttagaaatataatgaatagaccGGACTCTGAAGGAAGGCAtcagcagagaggggagagacataCACTTTGTCTGTGTGGAGAAGAGGGTGCTGGGAAGGATCGCTCTGACTCCACGTAGAGCCTGAGCTTTAGGTTGATTCGACACAGAACAGGAGAACTTTTGGTTGAACTTGGAATCactccttcccttcatccctctacaTGCAGACGggaggatggagtgagagagactcTTGTTTTTTTCGAGTGCTTTAATATACTGTATGGTGTTAGTTAGCTCACATCACTCCTTGTTAGGATTTCACATGTAAAAAAAgaccaaacaaaaaaaacacagaaatatTAGAGATCTGCTTAAGTCATGTTTGTATGTCTTTTAAGTTGTCAGGACTCTATATTACAGTATGCCCAAGGTGGTTCTTCAACATAAACagacagtgtacacacacacacagaacgggGCATGACGTAGTACTAGATTAGTATGTCGGGGCTTGGGCAAGCGATATTCAACTAATTAACAGGACATATGAAACAAGAAATTTGCAATATTCTCTCTTCATATTCATAGATTATTGGTTcatattattttattgttattacaATGATTTTATTATTTGATATTTGTATTTTCTGTAGTTTTTTTCTAATCGAAAAAGCTTGTAAAAATTGCTTGAAATGTTGTCCAACTTTCTTTATCGGGTGGGTTGGGATGTTTGGTCGGGTGGGTTGGGATGTTGTTTGGTCGGGGGGTTGGGATGTTTGGTCGGGGGAGTTGGGGAGTTGTCTCTGAAAGCTACTGTTCCCTCCTGTGCCTCACTGGACTGAAGGATACGGACCGCGTGCATAACCTCTGTAATATGTCACCCCACAGGTTCTTTATGCCTTGGCCATGGCCCACTTCTCAGACCGTGTTGCCATCCACCATTTGTCATCACGTGTCCCACAGTGCATTTATTTTATGGTTGTCATGGTTTCATGTCAGTTAGTGTGGTCATTATGAAGCGTAGCCAACTCATTACCCCTCTCTTTAGATCAGTGCGTGAATGGTGTTCTTCAATCTTCATCATTGTCAACTGCTAGCTAGTTCCAGTAGCCTCTATATAGCTTAAGACATGGCGTGTGTTTGGCTGATCAGAATGTGTGTTAATGGGCCTGGCTGTCCTGACTGAGTTCCCCTTCTACAGGAACCTGCCCTGACTGAGTCCCCCTTCTACAGGAACCTGCCCTGCGCCGTTCCCTTCCCAGTCTGTCCTCATGGTTCTCATGGCTGTGTGTGATTTCTCAGGCATTCCTATGGAACTATGGAACCTAGCAGGAAAGTGGAGAAAACCCTCCAACCCCTGACCTTAACCAACCCCTGACCTTAACCAGCGCTAGTTTTGGATTAATGTAATGCACTACAGTACGGCTAATACTACTAATATGGCCTCTAAGCGTTTGTGTTCTTGACAACAGAGAATATTGGCCTTTTGTTCGTTATTACAACCTCAGTTTTCAATCCATTTTTCTGTAGAAGTAGTCATGGTTTACAACGGGACTTTAGGAAAATGGTTGAAATTGCAGTGACGTACTGTTAGCCAGGACTGGACCCACAGACTCGTTACAGCACTACAGTGAGCCTGTTGTGGAATGGACACGTCCATCTTGTCCTCTTGGTTAGCCCTTGACACGTCCTCTTGGTTAGCCCTTGACACGTCCTCTTGGTTAGCCCTTGACACGTCCTCTTGGTTAGCCCTTGACACGTCCATCTTGTCCTCTTGGTTAGCCCTTGACACGTCCATCTTGTCCTCTTGGTTAGCCCTTGACACGTCCTCTTGGTTAGCCCTTGACACGTCCATCTTGTCCTCTTGGTTAGCCCTTGACACGTCCATCTTGTCCTCTTGGTTAGCCCTTGACACGTCCTCTTGGTTAGCCCTTGACACGTCCTCTTGGTTAGCCCTTGACACGTCCTCTTGGTTAGCCCTTGACACGTCCTCTTGGTTAGCCCTTGACACGTCCTCTTGGTTAGCCCTTGACACGTCCTCTTGGTTAGCCCTTGACACGTCCTCTTGGTTAGCCCTTGACACGTCCATCTTGTCCTCTTGGTTAGCCCTTGACACGTCCATCTTGTCCTCTTGGTTAGCCCTTGACACGTCCTCTTGGTTAGCCCTTGACACGTCCTCTTGGTTAGCCCTTGACACGTCCTCTTGGTTAGCCCTTGACACGTCCTCTTGGTTAGCCCTTGACACGTCCATCTTGTCCTCTTGGTTAGCCCTTGACACGTCCATCTTGTCCTCTTGGTTAGCCCTTGACACGTCCTCTTGGTTAGCCCTTGACACGTCCTCTTGGTTAGCCCTTGACACGTCCATCTTGTCCTCTTGGTTAGCCCTTGACACGTCCATCTTGTCCTCTTGGTTAGCCCTTGACACGTCCTCTTGGTTAGCCCTTGACACGTCCATTTTGTCCTCTTGGTTAGCCCTTGACACGTCCATCTTGTCCTCTTGGTTAGCCCTTGACACGTCCTCTTGGTTAGCCCTTGACACGTCCATTTTGTCCTCTTGGTTAGCCCTTGACACGTCCATCTTGTCCTCTTGGTTAGCCCTTGACACGTCCATCTTGTCCTCTTGGTTAGCCCTTGGTGTTGCCAGTCTGACATGGTGCAGTAGGCAGTGTAACTGTTCTAACCTTCGACCTGTATGTCTTTATTACTATGAGAAGAGCAGACTAGAATGGTCGTACTCTTAACGACAACTATGTAAGCGTGTTGTACGGTCATGTTATATGGTCATTGAGCCTGGTTCAGTTTGGCGTTGAGCATTCCATTGGGTTTGAGCATGTTATGTCATGGTCACGTTACGGT

Function

NR:

description
PREDICTED: ras-related protein Rab-1B

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07874 RAB1A; Ras-related protein Rab-1A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958175.1 True 4655 mRNA 0.47 6 53348513 53367113

Neighbor

gene id symbol gene type direction distance location
si:ch73-40a2.1 LOC106608602 coding upstream 813 53335916 ~ 53347700 (+)
LOC110500887 LOC106608584 coding upstream 17859 53268513 ~ 53330654 (+)
LOC110500722 NA coding upstream 91853 53251413 ~ 53256660 (+)
cth1 LOC106608603 coding upstream 97855 53248674 ~ 53250658 (+)
LOC110500719 LOC106608586 coding upstream 103334 53215229 ~ 53245179 (+)
LOC110500724 LOC106608582 coding downstream 38933 53406046 ~ 53418358 (+)
LOC110500725 LOC106608581 coding downstream 133010 53500123 ~ 53505026 (+)
LOC110500727 LOC106608576 coding downstream 368891 53736004 ~ 53891327 (+)
LOC118942947 NA coding downstream 402574 53769687 ~ 53773325 (+)
LOC110500729 md2l1 coding downstream 700339 54067452 ~ 54070543 (+)
G1751883 NA non-coding upstream 61026 53287190 ~ 53287487 (+)
G1751863 NA non-coding upstream 81713 53266285 ~ 53266800 (+)
G1751865 NA non-coding upstream 87805 53260365 ~ 53260708 (+)
G1751821 NA non-coding upstream 187689 53160568 ~ 53160824 (+)
G1751922 NA non-coding downstream 48155 53415268 ~ 53415502 (+)
G1751912 NA non-coding downstream 51428 53418541 ~ 53419324 (+)
G1751913 NA non-coding downstream 52280 53419393 ~ 53421659 (+)
G1751925 NA non-coding downstream 58457 53425570 ~ 53425807 (+)
G1751940 NA non-coding downstream 78259 53445372 ~ 53445739 (+)
G1751699 LOC106608599 other upstream 376130 52962449 ~ 52972383 (+)
G1750050 NA other upstream 1151506 52191200 ~ 52197007 (+)
G1750030 LOC106608688 other upstream 1253408 52094709 ~ 52095105 (+)
G1750012 NA other upstream 1269511 52071600 ~ 52079002 (+)
LOC110500735 ablim2 other downstream 839585 54206483 ~ 54342581 (+)
G1753100 NA other downstream 1634466 55001579 ~ 55011678 (+)
LOC110500754 LOC106591080 other downstream 2223492 55590450 ~ 55592100 (+)
G1755158 NA other downstream 3019294 56386407 ~ 56387622 (+)
G1755570 NA other downstream 3426618 56793731 ~ 56794574 (+)

Expression


Co-expression Network