XLOC_036536


Basic Information

Item Value
gene id XLOC_036536
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 30919949 ~ 30921272 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072480
tttttttttgcaaatttgatGCAATTCTTCGTAAACTTGTTCGGCTCTTATCTGATAGGCCTATcagatcgctcaaaccacttcagaaggtgatcTAGGATGCATttcagatgaaactggacaggtatAATAATTTTAGAcaaaactaatataaacaaaattaattatgaccaggagaaaatctgacctgctcctgaaacacctgtaggtgCCCTTTTAAAGCTTTAATACtaaaacataaagcaaacatgtTCCAACTTTTCaagcctgtagccaggggggttcagaagacccacccctcactgacaaaggtccaaaaTTTGTCCCATGTATgaactcatttgtcctattttaactgctatgccatcataaataatgaaaataatccatcgaaaaaggctttaagacctaTTGGAATTCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072480 True 421 lncRNA 0.36 2 30919949 30921272

Neighbor

gene id symbol gene type direction distance location
XLOC_036535 gstt1a coding downstream 128683 30787111 ~ 30791266 (-)
XLOC_036534 p2rx7 coding downstream 140848 30758169 ~ 30779101 (-)
XLOC_036533 gucd1 coding downstream 177716 30730628 ~ 30742233 (-)
XLOC_036532 dock8 coding downstream 495767 30325902 ~ 30424182 (-)
XLOC_036531 NA coding downstream 752245 30167630 ~ 30167704 (-)
XLOC_036537 smarcb1a coding upstream 8432 30929704 ~ 30944491 (-)
XLOC_036538 RALGDS coding upstream 28696 30949968 ~ 30979494 (-)
XLOC_036539 BX640472.1 coding upstream 78642 30999914 ~ 31000028 (-)
XLOC_036540 snrnp200 coding upstream 109341 31030613 ~ 31053872 (-)
XLOC_036541 slc20a1a coding upstream 135843 31057115 ~ 31075015 (-)
XLOC_036530 dre-mir-27b non-coding downstream 752424 30167435 ~ 30167525 (-)
XLOC_036529 dre-mir-24-3 non-coding downstream 757316 30162492 ~ 30162633 (-)
XLOC_036526 NA non-coding downstream 1064932 29853229 ~ 29855017 (-)
XLOC_036521 NA non-coding downstream 1225999 29691710 ~ 29693950 (-)
XLOC_036547 NA non-coding upstream 506863 31428135 ~ 31432412 (-)
XLOC_036555 BX545917.5 non-coding upstream 1506307 32427579 ~ 32431477 (-)
XLOC_036556 BX545917.6 non-coding upstream 1514466 32435738 ~ 32446891 (-)
XLOC_036557 BX545917.2 non-coding upstream 1530684 32451956 ~ 32453546 (-)
XLOC_036528 aopep coding downstream 603513 30159329 ~ 30316436 (-)
XLOC_036520 AL928845.1 non-coding downstream 1221667 29688511 ~ 29698282 (-)

Expression


Co-expression Network